Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G2236 Fragaria x ananassa HOM05D004654 ORTHO05D005414 2.8e-83 312.0 170 100.0
FAN28G0174 Fragaria x ananassa HOM05D004654 ORTHO05D005414 2.4e-82 308.9 170 98.8
FAN28G0874 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.6e-81 306.2 170 98.2
FAN26G0407 Fragaria x ananassa HOM05D004654 ORTHO05D005414 9.4e-79 297.0 170 96.5
FAN23G2643 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.7e-59 233.0 132 96.2
Prupe.3G011600 Prunus persica HOM05D004654 ORTHO05D005414 7.3e-47 191.0 195 64.1
MD17G1272400 Malus domestica HOM05D004654 ORTHO05D005414 4.4e-44 181.8 190 60.5
MD09G1282600 Malus domestica HOM05D004654 ORTHO05D005414 4.9e-43 178.3 200 61.5
Manes.01G125100 Manihot esculenta HOM05D004654 ORTHO05D005414 1.6e-33 146.7 187 54.0
Manes.02G082600 Manihot esculenta HOM05D004654 ORTHO05D005414 1.6e-33 146.7 180 56.7
Cpa.g.sc108.18 Carica papaya HOM05D004654 ORTHO05D005414 4.6e-33 145.2 191 50.8
Duzib138G0480 Durio zibethinus HOM05D004654 ORTHO05D005414 1.1e-31 140.6 161 53.4
Ciclev10012875m.g Citrus clementina HOM05D004654 ORTHO05D005414 1.9e-31 139.8 182 50.0
CANSAT78G0950 Cannabis sativa HOM05D004654 ORTHO05D005414 2.5e-31 139.4 176 51.7
QL02p054970 Quercus lobata HOM05D004654 ORTHO05D005414 1.2e-30 137.1 185 51.4
QL02p056026 Quercus lobata HOM05D004654 ORTHO05D005414 1.2e-30 137.1 190 50.5
COL.COLO4_00809 Corchorus olitorius HOM05D004654 ORTHO05D005414 1.6e-30 136.7 171 53.2
MD03G1273600 Malus domestica HOM05D004654 ORTHO05D005414 4.0e-29 132.1 147 58.5
CiPaw.07G102900 Carya illinoinensis HOM05D004654 ORTHO05D005414 5.2e-29 131.7 192 52.1
Thecc.04G056200 Theobroma cacao HOM05D004654 ORTHO05D005414 2.0e-28 129.8 155 54.2
Gohir.A08G038100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 2.6e-28 129.4 160 50.0
CiPaw.03G008900 Carya illinoinensis HOM05D004654 ORTHO05D005414 4.4e-28 128.6 178 53.4
arahy.Tifrunner.gnm1.ann1.C1RHT9 Arachis hypogaea HOM05D004654 ORTHO05D005414 5.8e-28 128.3 166 53.0
Carub.0002s1154 Capsella rubella HOM05D004654 ORTHO05D005414 7.6e-28 127.9 178 52.8
Gorai.008G054900 Gossypium raimondii HOM05D004654 ORTHO05D005414 7.6e-28 127.9 167 50.9
Cfa008008 Carpinus fangiana HOM05D004654 ORTHO05D005414 2.2e-27 126.3 183 50.8
Gohir.D12G051600 Gossypium hirsutum HOM05D004654 ORTHO05D005414 2.2e-27 126.3 167 50.3
CiPaw.13G067300 Carya illinoinensis HOM05D004654 ORTHO05D005414 2.9e-27 125.9 192 50.0
Gohir.D08G048300 Gossypium hirsutum HOM05D004654 ORTHO05D005414 2.9e-27 125.9 160 50.0
Gorai.004G047800 Gossypium raimondii HOM05D004654 ORTHO05D005414 2.9e-27 125.9 160 50.0
Atru.chr1.2194 Acer truncatum HOM05D004654 ORTHO05D005414 3.8e-27 125.6 183 50.8
Haze_14051 Corylus avellana HOM05D004654 ORTHO05D005414 3.8e-27 125.6 184 48.9
Thhalv10019176m.g Eutrema salsugineum HOM05D004654 ORTHO05D005414 6.4e-27 124.8 185 47.0
Aa31LG2G2610 Aethionema arabicum HOM05D004654 ORTHO05D005414 1.1e-26 124.0 191 47.1
Gohir.A12G053100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.1e-26 124.0 167 50.3
AT1G65720 Arabidopsis thaliana HOM05D004654 ORTHO05D005414 1.9e-26 123.2 174 52.9
Glyma.11G204100 Glycine max HOM05D004654 ORTHO05D005414 2.4e-26 122.9 182 47.3
Ca_15106_v3 Cicer arietinum L. HOM05D004654 ORTHO05D005414 3.2e-26 122.5 192 47.9
AL2G22850 Arabidopsis lyrata HOM05D004654 ORTHO05D005414 4.1e-26 122.1 182 50.0
THA.LOC104805666 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 4.1e-26 122.1 198 50.5
Phvul.006G084100 Phaseolus vulgaris HOM05D004654 ORTHO05D005414 5.4e-26 121.7 185 49.2
Glyma.18G046900 Glycine max HOM05D004654 ORTHO05D005414 9.2e-26 120.9 189 47.6
GSVIVG01005258001 Vitis vinifera HOM05D004654 ORTHO05D005414 9.2e-26 120.9 177 50.8
Sp5g20670 Schrenkiella parvula HOM05D004654 ORTHO05D005414 1.2e-25 120.6 184 47.3
VMungo0540G1596 Vigna mungo HOM05D004654 ORTHO05D005414 1.2e-25 120.6 186 48.9
Medtr3g064040 Medicago truncatula HOM05D004654 ORTHO05D005414 3.5e-25 119.0 181 45.3
BolC6t39010H Brassica oleracea HOM05D004654 ORTHO05D005414 6.0e-25 118.2 182 48.4
CARHR057580 Cardamine hirsuta HOM05D004654 ORTHO05D005414 1.0e-24 117.5 177 48.6
THA.LOC104823831 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 2.3e-24 116.3 195 46.7
TPR.G37307 Trifolium pratense HOM05D004654 ORTHO05D005414 2.3e-24 116.3 175 45.7
CiPaw.03G260700 Carya illinoinensis HOM05D004654 ORTHO05D005414 3.0e-24 115.9 168 51.2
Sabra17G0119000 Salix brachista HOM05D004654 ORTHO05D005414 5.1e-24 115.2 190 47.4
C06p39170 Brassica napus HOM05D004654 ORTHO05D005414 8.6e-24 114.4 182 47.8
Psat5g143960 Pisum sativum HOM05D004654 ORTHO05D005414 8.6e-24 114.4 182 46.7
Lj6g0008387 Lotus japonicus HOM05D004654 ORTHO05D005414 1.9e-23 113.2 181 48.1
BolC2t08298H Brassica oleracea HOM05D004654 ORTHO05D005414 3.3e-23 112.5 165 49.7
Potri.004G078500 Populus trichocarpa HOM05D004654 ORTHO05D005414 4.3e-23 112.1 177 47.5
BraA07t30922Z Brassica rapa HOM05D004654 ORTHO05D005414 5.6e-23 111.7 181 46.4
THA.LOC104822158 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 5.6e-23 111.7 199 46.2
arahy.Tifrunner.gnm1.ann1.RSI5EI Arachis hypogaea HOM05D004654 ORTHO05D005414 7.3e-23 111.3 187 44.4
A07p32950 Brassica napus HOM05D004654 ORTHO05D005414 9.6e-23 110.9 185 45.9
Potri.017G142100 Populus trichocarpa HOM05D004654 ORTHO05D005414 1.2e-22 110.5 179 47.5
Sabra04G0052000 Salix brachista HOM05D004654 ORTHO05D005414 1.6e-22 110.2 196 42.9
BcaC03g14719 Brassica carinata HOM05D004654 ORTHO05D005414 1.1e-21 107.5 184 46.2
C02p21610 Brassica napus HOM05D004654 ORTHO05D005414 1.1e-21 107.5 184 46.2
BraA02t06392Z Brassica rapa HOM05D004654 ORTHO05D005414 1.1e-21 107.5 162 48.8
A02p13350 Brassica napus HOM05D004654 ORTHO05D005414 1.4e-21 107.1 172 48.3
vmacro20421 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 2.4e-21 106.3 193 45.1
Eucgr.F02926 Eucalyptus grandis HOM05D004654 ORTHO05D005414 5.2e-21 105.1 118 55.9
PGR004G1881 Punica granatum HOM05D004654 ORTHO05D005414 6.9e-21 104.8 187 43.9
Peaxi162Scf00918g00026 Petunia axillaris HOM05D004654 ORTHO05D005414 1.2e-20 104.0 218 40.4
vmacro23510 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 7.6e-20 101.3 192 43.8
Nitab4.5_0008713g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 9.9e-20 100.9 210 41.0
Cc07_g12430 Coffea canephora HOM05D004654 ORTHO05D005414 6.4e-19 98.2 203 39.4
Actinidia17131 Actinidia chinensis HOM05D004654 ORTHO05D005414 1.1e-18 97.4 198 40.9
Aqoxy5G02573 Aquilegia oxysepala HOM05D004654 ORTHO05D005414 1.1e-18 97.4 221 38.5
Haze_14062 Corylus avellana HOM05D004654 ORTHO05D005414 1.4e-18 97.1 130 51.5
PGSC0003DMG400024083 Solanum tuberosum HOM05D004654 ORTHO05D005414 1.9e-18 96.7 217 38.7
HanXRQChr16g0532651 Helianthus annuus HOM05D004654 ORTHO05D005414 3.2e-18 95.9 173 42.2
ClCG05G011320 Citrullus lanatus HOM05D004654 ORTHO05D005414 4.2e-18 95.5 195 43.1
ECA246G3021 Erigeron canadensis HOM05D004654 ORTHO05D005414 4.2e-18 95.5 175 42.3
Sed0014762 Sechium edule HOM05D004654 ORTHO05D005414 4.2e-18 95.5 177 45.2
Solyc03g031950.3 Solanum lycopersicum HOM05D004654 ORTHO05D005414 7.1e-18 94.7 218 37.2
PSO782G3544 Papaver somniferum HOM05D004654 ORTHO05D005414 9.3e-18 94.4 192 41.1
Lalb_Chr17g0345801 Lupinus albus HOM05D004654 ORTHO05D005414 1.2e-17 94.0 171 42.1
PSO566G0049 Papaver somniferum HOM05D004654 ORTHO05D005414 1.2e-17 94.0 202 39.6
PSO566G0349 Papaver somniferum HOM05D004654 ORTHO05D005414 1.2e-17 94.0 202 39.6
Rhsim08G0023400 Rhododendron simsii HOM05D004654 ORTHO05D005414 1.2e-17 94.0 188 43.6
Sopen03g005810 Solanum pennellii HOM05D004654 ORTHO05D005414 1.2e-17 94.0 218 37.2
MELO3C020251.2 Cucumis melo HOM05D004654 ORTHO05D005414 1.6e-17 93.6 189 40.7
arahy.Tifrunner.gnm1.ann1.70EH4T Arachis hypogaea HOM05D004654 ORTHO05D005414 2.7e-17 92.8 185 44.3
Dinv28280 Davidia involucrata HOM05D004654 ORTHO05D005414 2.7e-17 92.8 193 45.1
TAR374G0741 Trochodendron aralioides HOM05D004654 ORTHO05D005414 2.7e-17 92.8 214 40.7
HPP92_022519 Vanilla planifolia HOM05D004654 ORTHO05D005414 2.7e-17 92.8 186 42.5
arahy.Tifrunner.gnm1.ann1.6F687N Arachis hypogaea HOM05D004654 ORTHO05D005414 3.5e-17 92.4 185 44.3
AUR62004739 Chenopodium quinoa HOM05D004654 ORTHO05D005414 3.5e-17 92.4 193 40.9
PGSC0003DMG400037923 Solanum tuberosum HOM05D004654 ORTHO05D005414 3.5e-17 92.4 197 39.1
TAR622G1006 Trochodendron aralioides HOM05D004654 ORTHO05D005414 3.5e-17 92.4 176 43.2
CsaV3_3G021140 Cucumis sativus L. HOM05D004654 ORTHO05D005414 4.6e-17 92.0 189 40.2
Oeu024775.2 Olea europaea HOM05D004654 ORTHO05D005414 6.0e-17 91.7 210 39.0
Lalb_Chr20g0117181 Lupinus albus HOM05D004654 ORTHO05D005414 1.7e-16 90.1 205 37.1
Oeu034013.1 Olea europaea HOM05D004654 ORTHO05D005414 1.7e-16 90.1 182 39.6
AUR62037512 Chenopodium quinoa HOM05D004654 ORTHO05D005414 5.1e-16 88.6 195 39.0
DCAR_002994 Daucus carota HOM05D004654 ORTHO05D005414 5.1e-16 88.6 180 43.9
MBI03_g34062_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 5.1e-16 88.6 199 39.2
CDE04G3704 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 8.7e-16 87.8 156 42.3
Hma1.2p1_0034F.1_g021540 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 1.1e-15 87.4 204 41.7
Hma1.2p1_0085F.1_g044140 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 1.1e-15 87.4 195 39.5
SalBow6G0287 Salvia bowleyana HOM05D004654 ORTHO05D005414 1.1e-15 87.4 189 40.2
HPP92_007306 Vanilla planifolia HOM05D004654 ORTHO05D005414 1.1e-15 87.4 139 46.0
Sc09g0004620 Simmondsia chinensis HOM05D004654 ORTHO05D005414 1.5e-15 87.0 206 38.8
Hma1.2p1_2924F.1_g330430 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 1.9e-15 86.7 197 39.1
HanXRQChr15g0485191 Helianthus annuus HOM05D004654 ORTHO05D005414 2.5e-15 86.3 174 37.4
Lsat_1_v5_gn_3_68821 Lactuca sativa HOM05D004654 ORTHO05D005414 2.5e-15 86.3 196 41.3
Lsat_1_v5_gn_8_113741 Lactuca sativa HOM05D004654 ORTHO05D005414 3.3e-15 85.9 191 36.1
MBI03_g05124_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 5.6e-15 85.1 197 38.6
Nn4g24900 Nelumbo nucifera HOM05D004654 ORTHO05D005414 1.3e-14 84.0 131 46.6
Lsat_1_v5_gn_2_72380 Lactuca sativa HOM05D004654 ORTHO05D005414 2.1e-14 83.2 187 39.0
Ah.04g162850 Amaranthus hybridus HOM05D004654 ORTHO05D005414 2.8e-14 82.8 194 38.7
EL10Ac4g08895 Beta vulgaris HOM05D004654 ORTHO05D005414 3.6e-14 82.4 117 47.9
CDE07G1822 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 3.6e-14 82.4 183 40.4
MBI06_g28670_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 4.8e-14 82.0 183 37.7
Nitab4.5_0000235g0010 Nicotiana tabacum HOM05D004654 ORTHO05D005414 6.2e-14 81.6 208 34.6
ATR0618G257 Amborella trichopoda HOM05D004654 ORTHO05D005414 8.1e-14 81.3 72 55.6
Os03g0110300 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 1.4e-13 80.5 156 41.7
Actinidia35698 Actinidia chinensis HOM05D004654 ORTHO05D005414 2.4e-13 79.7 174 38.5
Migut.D00607 Erythranthe guttata HOM05D004654 ORTHO05D005414 2.4e-13 79.7 193 37.3
Gohir.A04G103050 Gossypium hirsutum HOM05D004654 ORTHO05D005414 3.1e-13 79.3 60 65.0
Nitab4.5_0003016g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 5.3e-13 78.6 204 34.3
TAR374G0450 Trochodendron aralioides HOM05D004654 ORTHO05D005414 6.9e-13 78.2 85 52.9
Lalb_Chr10g0103991 Lupinus albus HOM05D004654 ORTHO05D005414 1.5e-12 77.0 149 44.3
DCAR_014130 Daucus carota HOM05D004654 ORTHO05D005414 4.5e-12 75.5 159 39.0
Zm00001eb000770 Zea mays HOM05D004654 ORTHO05D005414 4.5e-12 75.5 169 40.8
SGA_v2.0_scaffold8G04582 Striga asiatica HOM05D004654 ORTHO05D005414 1.3e-11 73.9 196 36.7
DCAR_000947 Daucus carota HOM05D004654 ORTHO05D005414 2.2e-11 73.2 117 42.7
Dinv03197 Davidia involucrata HOM05D004654 ORTHO05D005414 2.9e-11 72.8 186 36.0
Os10g0483900 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 2.9e-11 72.8 192 33.9
HanXRQChr15g0486441 Helianthus annuus HOM05D004654 ORTHO05D005414 3.8e-11 72.4 160 38.1
TWI77G0610 Tripterygium wilfordii HOM05D004654 ORTHO05D005414 3.8e-11 72.4 183 35.5
Ah.06g191460 Amaranthus hybridus HOM05D004654 ORTHO05D005414 8.4e-11 71.2 212 34.0
SGA_v2.0_scaffold247G44889 Striga asiatica HOM05D004654 ORTHO05D005414 8.4e-11 71.2 113 41.6
unitig_578.g16656 Utricularia gibba HOM05D004654 ORTHO05D005414 2.4e-10 69.7 87 50.6
unitig_90.g27472 Utricularia gibba HOM05D004654 ORTHO05D005414 2.4e-10 69.7 103 48.5
BcaB03g15322 Brassica carinata HOM05D004654 ORTHO05D005414 4.2e-10 68.9 68 55.9
unitig_85.g27201 Utricularia gibba HOM05D004654 ORTHO05D005414 7.1e-10 68.2 84 54.8
Zm00001eb221440 Zea mays HOM05D004654 ORTHO05D005414 1.0e-08 64.3 175 32.6
Zm00001eb045470 Zea mays HOM05D004654 ORTHO05D005414 1.8e-08 63.5 173 32.9
Peaxi162Scf00784g00044 Petunia axillaris HOM05D004654 ORTHO05D005414 5.1e-08 62.0 62 54.8
Dinv19105 Davidia involucrata HOM05D004654 ORTHO05D005414 2.5e-07 59.7 169 36.1
Lj5C23T4 Lonicera japonica HOM05D004654 ORTHO05D005414 3.3e-07 59.3 98 42.9
SGA_v2.0_scaffold42G16062 Striga asiatica HOM05D004654 ORTHO05D005414 6.2e-06 55.1 191 31.4


User provided reference genes

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