Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G2204 Fragaria x ananassa HOM05D005434 ORTHO05D006412 0.0e+00 1586.6 845 100.0
FvH4_1g26160 Fragaria vesca HOM05D005434 ORTHO05D006412 0.0e+00 1576.2 849 99.3
FAN23G2884 Fragaria x ananassa HOM05D005434 ORTHO05D006412 0.0e+00 1431.4 843 92.4
FAN26G2209 Fragaria x ananassa HOM05D005434 ORTHO05D006412 0.0e+00 1396.7 822 93.1
FAN28G1136 Fragaria x ananassa HOM05D005434 ORTHO05D006412 0.0e+00 1350.5 892 84.6
RcHm_v2.0_Chr3g0485651 Rosa chinensis HOM05D005434 ORTHO05D006412 0.0e+00 1175.6 859 76.6
MD09G1291300 Malus domestica HOM05D005434 ORTHO05D006412 1.2e-203 714.1 875 52.8
Prupe.3G001600 Prunus persica HOM05D005434 ORTHO05D006412 2.1e-203 713.4 813 55.1
MD17G1286100 Malus domestica HOM05D005434 ORTHO05D006412 5.3e-199 698.7 868 51.4
QL12p035062 Quercus lobata HOM05D005434 ORTHO05D006412 3.6e-131 473.4 882 39.1
Haze_05156 Corylus avellana HOM05D005434 ORTHO05D006412 4.6e-126 456.4 839 39.5
Manes.05G008100 Manihot esculenta HOM05D005434 ORTHO05D006412 1.8e-122 444.5 897 36.7
Atru.chr5.851 Acer truncatum HOM05D005434 ORTHO05D006412 3.1e-122 443.7 916 36.2
CiPaw.08G081800 Carya illinoinensis HOM05D005434 ORTHO05D006412 1.1e-119 435.3 907 36.7
Potri.002G186200 Populus trichocarpa HOM05D005434 ORTHO05D006412 1.4e-119 434.9 918 38.1
Actinidia20964 Actinidia chinensis HOM05D005434 ORTHO05D006412 1.9e-111 407.9 897 36.7
Thecc.01G326300 Theobroma cacao HOM05D005434 ORTHO05D006412 1.2e-110 405.2 902 35.6
Potri.014G111500 Populus trichocarpa HOM05D005434 ORTHO05D006412 1.1e-108 398.7 912 35.9
Duzib138G0614 Durio zibethinus HOM05D005434 ORTHO05D006412 4.8e-107 393.3 871 34.8
COL.COLO4_23119 Corchorus olitorius HOM05D005434 ORTHO05D006412 4.5e-105 386.7 869 35.3
Dinv12078 Davidia involucrata HOM05D005434 ORTHO05D006412 7.7e-105 386.0 744 39.7
Sabra14G0081900 Salix brachista HOM05D005434 ORTHO05D006412 1.1e-103 382.1 860 37.0
Duzib133G0025 Durio zibethinus HOM05D005434 ORTHO05D006412 2.0e-100 371.3 873 33.3
Glyma.02G007100 Glycine max HOM05D005434 ORTHO05D006412 3.7e-99 367.1 895 34.0
TWI14G0253 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 8.2e-99 365.9 871 37.3
Lj5g0001301 Lotus japonicus HOM05D005434 ORTHO05D006412 6.9e-98 362.8 897 34.0
Phvul.007G208600 Phaseolus vulgaris HOM05D005434 ORTHO05D006412 2.6e-97 360.9 896 34.8
Gohir.D11G110300 Gossypium hirsutum HOM05D005434 ORTHO05D006412 1.0e-93 349.0 913 32.9
Gohir.A11G105400 Gossypium hirsutum HOM05D005434 ORTHO05D006412 1.4e-93 348.6 916 32.6
Gorai.007G117900 Gossypium raimondii HOM05D005434 ORTHO05D006412 1.4e-93 348.6 915 32.7
Rhsim02G0256300 Rhododendron simsii HOM05D005434 ORTHO05D006412 1.8e-90 338.2 873 34.9
Psat6g158560 Pisum sativum HOM05D005434 ORTHO05D006412 3.1e-90 337.4 898 33.0
TPR.G3083 Trifolium pratense HOM05D005434 ORTHO05D006412 1.5e-89 335.1 881 33.4
ClCG02G017720 Citrullus lanatus HOM05D005434 ORTHO05D006412 1.3e-88 332.0 869 33.8
Gorai.001G148200 Gossypium raimondii HOM05D005434 ORTHO05D006412 2.2e-88 331.3 890 32.6
CANSAT25G2989 Cannabis sativa HOM05D005434 ORTHO05D006412 1.2e-86 325.5 954 32.5
Glyma.10G138700 Glycine max HOM05D005434 ORTHO05D006412 2.1e-86 324.7 879 33.1
Gohir.A07G131800 Gossypium hirsutum HOM05D005434 ORTHO05D006412 2.7e-86 324.3 886 32.6
TAR365G0925 Trochodendron aralioides HOM05D005434 ORTHO05D006412 3.6e-86 323.9 891 32.4
Medtr1g085710 Medicago truncatula HOM05D005434 ORTHO05D006412 9.7e-84 315.8 878 33.6
Ca_10237_v3 Cicer arietinum L. HOM05D005434 ORTHO05D006412 2.4e-82 311.2 867 33.7
TAR636G0087 Trochodendron aralioides HOM05D005434 ORTHO05D006412 4.1e-82 310.5 883 32.7
Sed0005889 Sechium edule HOM05D005434 ORTHO05D006412 5.0e-80 303.5 901 31.7
PGR142G2929 Punica granatum HOM05D005434 ORTHO05D006412 2.1e-78 298.1 984 31.3
arahy.Tifrunner.gnm1.ann1.G6BN46 Arachis hypogaea HOM05D005434 ORTHO05D006412 6.1e-78 296.6 903 30.6
VMungo0720G1215 Vigna mungo HOM05D005434 ORTHO05D006412 2.3e-77 294.7 831 33.2
Sed0026347 Sechium edule HOM05D005434 ORTHO05D006412 8.8e-77 292.7 909 30.7
CsaV3_6G012840 Cucumis sativus L. HOM05D005434 ORTHO05D006412 4.4e-76 290.4 891 31.9
MELO3C013628.2 Cucumis melo HOM05D005434 ORTHO05D006412 2.8e-75 287.7 890 31.7
Gohir.D07G136100 Gossypium hirsutum HOM05D005434 ORTHO05D006412 6.3e-75 286.6 844 31.0
SHI34042 Sapria himalayana HOM05D005434 ORTHO05D006412 8.5e-72 276.2 848 31.2
DCAR_002941 Daucus carota HOM05D005434 ORTHO05D006412 2.7e-70 271.2 855 30.6
Nn3g21972 Nelumbo nucifera HOM05D005434 ORTHO05D006412 3.6e-70 270.8 945 30.8
CiPaw.07G126300 Carya illinoinensis HOM05D005434 ORTHO05D006412 3.0e-69 267.7 702 32.9
DCAR_005712 Daucus carota HOM05D005434 ORTHO05D006412 1.2e-68 265.8 917 30.1
Ciclev10019510m.g Citrus clementina HOM05D005434 ORTHO05D006412 4.4e-68 263.8 650 34.9
Cc01_g21750 Coffea canephora HOM05D005434 ORTHO05D006412 5.7e-68 263.5 876 32.1
MBI18_g03842_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 5.7e-68 263.5 874 33.4
Cpa.g.sc57.27 Carica papaya HOM05D005434 ORTHO05D006412 1.2e-65 255.8 810 31.7
Aqoxy2G02439 Aquilegia oxysepala HOM05D005434 ORTHO05D006412 2.0e-65 255.0 878 30.6
CSS0010810 Camellia sinensis var. sinensis HOM05D005434 ORTHO05D006412 4.2e-63 247.3 684 33.3
Eucgr.K00557 Eucalyptus grandis HOM05D005434 ORTHO05D006412 4.2e-63 247.3 863 29.4
PSO210G4596 Papaver somniferum HOM05D005434 ORTHO05D006412 4.2e-63 247.3 930 29.4
AT2G46980 Arabidopsis thaliana HOM05D005434 ORTHO05D006412 3.0e-61 241.1 892 29.7
Sp4g28980 Schrenkiella parvula HOM05D005434 ORTHO05D006412 4.0e-61 240.7 899 30.1
FAN12G4172 Fragaria x ananassa HOM05D005434 ORTHO05D006412 1.5e-60 238.8 144 87.5
Peaxi162Scf00309g00625 Petunia axillaris HOM05D005434 ORTHO05D006412 2.0e-60 238.4 888 30.2
CARHR142350 Cardamine hirsuta HOM05D005434 ORTHO05D006412 3.4e-60 237.7 897 29.7
TWI23G0760 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 1.7e-59 235.3 687 32.5
PGSC0003DMG400001122 Solanum tuberosum HOM05D005434 ORTHO05D006412 6.3e-59 233.4 884 30.0
AL4G46460 Arabidopsis lyrata HOM05D005434 ORTHO05D006412 2.4e-58 231.5 891 29.0
Solyc01g079080.3 Solanum lycopersicum HOM05D005434 ORTHO05D006412 1.6e-57 228.8 880 28.8
Nitab4.5_0000222g0380 Nicotiana tabacum HOM05D005434 ORTHO05D006412 2.0e-57 228.4 858 31.7
Thhalv10001318m.g Eutrema salsugineum HOM05D005434 ORTHO05D006412 4.6e-57 227.3 851 30.4
Sopen01g030590 Solanum pennellii HOM05D005434 ORTHO05D006412 1.3e-56 225.7 884 29.2
ECA247G2130 Erigeron canadensis HOM05D005434 ORTHO05D008082 3.9e-56 224.2 859 28.5
C04p00990 Brassica napus HOM05D005434 ORTHO05D006412 1.1e-55 222.6 884 28.6
Lsat_1_v5_gn_9_7120 Lactuca sativa HOM05D005434 ORTHO05D006412 1.1e-55 222.6 856 28.4
BraA05t19085Z Brassica rapa HOM05D005434 ORTHO05D006412 1.5e-55 222.2 884 29.0
Carub.0004s2971 Capsella rubella HOM05D005434 ORTHO05D006412 1.9e-55 221.9 901 29.1
GSVIVG01028240001 Vitis vinifera HOM05D005434 ORTHO05D006412 1.9e-55 221.9 655 32.2
Aa31LG1G28350 Aethionema arabicum HOM05D005434 ORTHO05D006412 2.1e-54 218.4 895 28.3
FAN18G2209 Fragaria x ananassa HOM05D005434 ORTHO05D006412 2.8e-54 218.0 135 84.4
AUR62011691 Chenopodium quinoa HOM05D005434 ORTHO05D006412 1.5e-52 212.2 846 29.6
CAN.G179.30 Capsicum annuum HOM05D005434 ORTHO05D006412 5.8e-52 210.3 885 27.7
Oeu052591.1 Olea europaea HOM05D005434 ORTHO05D006412 9.8e-52 209.5 795 29.1
Lalb_Chr02g0147201 Lupinus albus HOM05D005434 ORTHO05D006412 6.0e-49 200.3 184 61.4
MBI19_g04828_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 2.3e-48 198.4 870 28.3
Dinv33176 Davidia involucrata HOM05D005434 ORTHO05D006412 3.0e-48 198.0 464 33.0
EL10Ac4g10377 Beta vulgaris HOM05D005434 ORTHO05D006412 7.3e-47 193.4 834 28.7
Sc17g0000070 Simmondsia chinensis HOM05D005434 ORTHO05D006412 1.6e-46 192.2 828 28.6
A05p00820 Brassica napus HOM05D005434 ORTHO05D006412 8.1e-46 189.9 830 28.3
Lj1A7G43 Lonicera japonica HOM05D005434 ORTHO05D006412 6.8e-45 186.8 169 60.9
BcaC02g12826 Brassica carinata HOM05D005434 ORTHO05D006412 1.2e-44 186.0 844 27.6
BolC4t21751H Brassica oleracea HOM05D005434 ORTHO05D006412 1.2e-44 186.0 866 28.8
Migut.D00008 Erythranthe guttata HOM05D005434 ORTHO05D006412 1.5e-44 185.7 899 25.3
BcaC02g12619 Brassica carinata HOM05D005434 ORTHO05D006412 6.4e-43 180.3 686 29.7
Nitab4.5_0003092g0060 Nicotiana tabacum HOM05D005434 ORTHO05D006412 6.4e-43 180.3 896 28.5
arahy.Tifrunner.gnm1.ann1.9BA1LG Arachis hypogaea HOM05D005434 ORTHO05D006412 1.1e-42 179.5 665 28.0
FvH4_4g08230 Fragaria vesca HOM05D005434 ORTHO05D006412 9.2e-42 176.4 95 96.8
AUR62024551 Chenopodium quinoa HOM05D005434 ORTHO05D006412 4.6e-41 174.1 844 28.6
Lj1A7T44 Lonicera japonica HOM05D005434 ORTHO05D006412 3.9e-40 171.0 381 34.6
GSVIVG01028239001 Vitis vinifera HOM05D005434 ORTHO05D006412 5.6e-39 167.2 129 68.2
SGA_v2.0_scaffold310G48189 Striga asiatica HOM05D005434 ORTHO05D006412 7.3e-39 166.8 880 27.8
Lalb_Chr02g0147191 Lupinus albus HOM05D005434 ORTHO05D006412 6.2e-38 163.7 663 28.5
Actinidia25873 Actinidia chinensis HOM05D005434 ORTHO05D006412 1.1e-34 152.9 527 30.7
CiPaw.07G126400 Carya illinoinensis HOM05D005434 ORTHO05D006412 1.9e-31 142.1 140 56.4
Sc17g0000050 Simmondsia chinensis HOM05D005434 ORTHO05D006412 3.3e-31 141.4 172 51.2
SGA_v2.0_scaffold417G51248 Striga asiatica HOM05D005434 ORTHO05D006412 4.3e-31 141.0 950 24.2
Dinv33178 Davidia involucrata HOM05D005434 ORTHO05D006412 8.1e-30 136.7 107 70.1
HPP92_011320 Vanilla planifolia HOM05D005434 ORTHO05D006412 3.4e-28 131.3 920 24.3
Zm00001eb233800 Zea mays HOM05D005434 ORTHO05D006412 1.9e-26 125.6 710 26.6
Ciclev10023478m.g Citrus clementina HOM05D005434 ORTHO05D006412 1.2e-25 122.9 99 68.7
CDE02G0039 Ceratophyllum demersum HOM05D005434 ORTHO05D006412 1.6e-25 122.5 161 45.3
BcaB07g33880 Brassica carinata HOM05D005434 ORTHO05D006412 1.6e-22 112.5 296 33.8
Os10g0405500 Oryza sativa ssp. japonica HOM05D005434 ORTHO05D006412 2.8e-22 111.7 915 23.7
unitig_62.g23901 Utricularia gibba HOM05D005434 ORTHO05D006412 5.4e-18 97.4 214 33.6
PGSC0003DMG400023095 Solanum tuberosum HOM05D005434 ORTHO05D007977 7.6e-12 77.0 129 41.1
Sc17g0000060 Simmondsia chinensis HOM05D005434 ORTHO05D006412 9.9e-12 76.6 439 24.1
Dinv12077 Davidia involucrata HOM05D005434 ORTHO05D006412 1.2e-09 69.7 87 44.8
Dinv33187 Davidia involucrata HOM05D005434 ORTHO05D006412 1.6e-09 69.3 311 27.7
CDE08G1326 Ceratophyllum demersum HOM05D005434 ORTHO05D006412 2.7e-09 68.6 70 47.1
HanXRQChr10g0286491 Helianthus annuus HOM05D005434 ORTHO05D006412 1.0e-08 66.6 243 26.3
Actinidia21335 Actinidia chinensis HOM05D005434 ORTHO05D006412 1.3e-08 66.2 117 37.6
BcaC01g05050 Brassica carinata HOM05D005434 ORTHO05D006412 2.5e-07 62.0 76 46.1
SEGI_30180 Sequoiadendron giganteum HOM05D005434 ORTHO05D006412 3.3e-07 61.6 180 31.1
AagrBONN_evm.TU.Sc2ySwM_344.3613 Anthoceros agrestis HOM05D022252 ORTHO05D006412 2.1e-06 58.9 172 27.3


User provided reference genes

Program Settings