Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G2114 Fragaria x ananassa HOM05D015887 ORTHO05D045986 0.0e+00 1131.7 564 100.0
FvH4_1g06481 Fragaria vesca HOM05D015887 ORTHO05D045986 1.3e-225 786.6 393 99.7
FAN14G1196 Fragaria x ananassa HOM05D015887 ORTHO05D035644 2.2e-55 221.1 158 77.2
FvH4_5g14740 Fragaria vesca HOM05D015887 ORTHO05D035644 1.2e-53 215.3 154 75.3
FAN05G3437 Fragaria x ananassa HOM05D015887 ORTHO05D209240 2.2e-47 194.5 153 69.9
FvH4_6g03810 Fragaria vesca HOM05D015887 ORTHO05D035644 8.6e-28 129.4 134 61.2
Cfa000125 Carpinus fangiana HOM05D002400 ORTHO05D002568 1.1e-19 102.4 331 29.3
Prupe.1G551800 Prunus persica HOM05D002400 ORTHO05D002568 2.1e-18 98.2 395 27.1
Cfa012832 Carpinus fangiana HOM05D002400 ORTHO05D002568 2.8e-18 97.8 328 29.3
Cfa017093 Carpinus fangiana HOM05D002400 ORTHO05D002568 1.4e-17 95.5 290 27.6
FAN21G0786 Fragaria x ananassa HOM05D015887 ORTHO05D209382 2.4e-17 94.7 80 66.2
Haze_21068 Corylus avellana HOM05D002400 ORTHO05D002568 6.8e-17 93.2 324 28.7
Haze_21106 Corylus avellana HOM05D002400 ORTHO05D002568 6.8e-17 93.2 332 27.1
RcHm_v2.0_Chr5g0068981 Rosa chinensis HOM05D002400 ORTHO05D002568 1.2e-16 92.4 301 26.9
Cfa005421 Carpinus fangiana HOM05D002400 ORTHO05D002568 2.0e-16 91.7 362 26.2
Haze_06898 Corylus avellana HOM05D002400 ORTHO05D002568 2.6e-16 91.3 326 28.5
Manes.09G032300 Manihot esculenta HOM05D002400 ORTHO05D002568 2.2e-15 88.2 380 25.5
FAN14G4887 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.8e-15 87.4 391 27.1
Prupe.7G108600 Prunus persica HOM05D002400 ORTHO05D002568 3.8e-15 87.4 375 24.8
RcHm_v2.0_Chr3g0474041 Rosa chinensis HOM05D002400 ORTHO05D002568 8.4e-15 86.3 339 25.7
Cfa000126 Carpinus fangiana HOM05D002400 ORTHO05D002568 1.9e-14 85.1 211 31.3
Haze_01604 Corylus avellana HOM05D002400 ORTHO05D002568 1.9e-14 85.1 345 26.4
RcHm_v2.0_Chr2g0157031 Rosa chinensis HOM05D002400 ORTHO05D002568 1.9e-14 85.1 301 25.9
MD14G1024100 Malus domestica HOM05D002400 ORTHO05D002568 4.2e-14 84.0 378 23.8
MD04G1145500 Malus domestica HOM05D002400 ORTHO05D002568 5.4e-14 83.6 406 24.1
Cfa005420 Carpinus fangiana HOM05D002400 ORTHO05D002568 9.3e-14 82.8 357 25.2
MD14G1026300 Malus domestica HOM05D002400 ORTHO05D002568 1.2e-13 82.4 330 27.6
Thecc.04G074200 Theobroma cacao HOM05D020315 ORTHO05D019057 1.2e-13 82.4 240 27.9
RcHm_v2.0_Chr7g0205961 Rosa chinensis HOM05D002400 ORTHO05D002568 2.7e-13 81.3 382 25.1
RcHm_v2.0_Chr3g0475391 Rosa chinensis HOM05D002400 ORTHO05D002568 3.5e-13 80.9 378 26.7
Cfa005419 Carpinus fangiana HOM05D002400 ORTHO05D002568 4.6e-13 80.5 394 24.1
MD12G1025400 Malus domestica HOM05D002400 ORTHO05D002568 4.6e-13 80.5 304 27.0
Cfa017157 Carpinus fangiana HOM05D002400 ORTHO05D002568 7.8e-13 79.7 247 32.0
CiPaw.12G069200 Carya illinoinensis HOM05D002400 ORTHO05D002568 7.8e-13 79.7 388 24.7
FAN05G2917 Fragaria x ananassa HOM05D002400 ORTHO05D002568 7.8e-13 79.7 380 25.5
Prupe.7G104900 Prunus persica HOM05D002400 ORTHO05D002568 7.8e-13 79.7 346 24.3
FAN09G1480 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.7e-12 78.6 338 26.0
FAN18G0337 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.7e-12 78.6 390 24.6
Haze_04784 Corylus avellana HOM05D002400 ORTHO05D002568 2.3e-12 78.2 339 24.8
FAN05G1596 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.0e-12 77.8 343 25.7
RcHm_v2.0_Chr5g0069001 Rosa chinensis HOM05D002400 ORTHO05D002568 3.0e-12 77.8 364 22.3
vmacro05682 Vaccinium macrocarpon HOM05D002400 ORTHO05D002568 3.0e-12 77.8 390 24.9
Prupe.2G052100 Prunus persica HOM05D002400 ORTHO05D002568 3.9e-12 77.4 382 24.1
RcHm_v2.0_Chr7g0193261 Rosa chinensis HOM05D002400 ORTHO05D002568 3.9e-12 77.4 312 26.9
FAN06G1151 Fragaria x ananassa HOM05D002400 ORTHO05D002568 6.6e-12 76.6 344 26.2
FAN09G2919 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.1e-11 75.9 302 24.8
FAN09G4576 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.1e-11 75.9 408 22.1
MD14G1026400 Malus domestica HOM05D002400 ORTHO05D002568 1.1e-11 75.9 330 27.6
MD14G1026700 Malus domestica HOM05D002400 ORTHO05D002568 1.1e-11 75.9 373 24.7
FvH4_5g32301 Fragaria vesca HOM05D002400 ORTHO05D002568 1.5e-11 75.5 349 24.9
Haze_01882 Corylus avellana HOM05D002400 ORTHO05D002568 1.9e-11 75.1 275 28.4
FvH4_6g08300 Fragaria vesca HOM05D002400 ORTHO05D002568 1.9e-11 75.1 343 25.1
FAN14G3017 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.9e-11 75.1 343 25.1
Prupe.7G108700 Prunus persica HOM05D002400 ORTHO05D002568 1.9e-11 75.1 340 24.1
Cfa005425 Carpinus fangiana HOM05D002400 ORTHO05D002568 2.5e-11 74.7 345 24.9
FAN05G4425 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.3e-11 74.3 408 24.8
FvH4_6g19040 Fragaria vesca HOM05D002400 ORTHO05D002568 4.3e-11 73.9 398 24.4
PSO782G4805 Papaver somniferum HOM05D000051 ORTHO05D000015 5.6e-11 73.6 352 23.6
RcHm_v2.0_Chr3g0473961 Rosa chinensis HOM05D002400 ORTHO05D002568 5.6e-11 73.6 351 25.1
RcHm_v2.0_Chr3g0474031 Rosa chinensis HOM05D002400 ORTHO05D002568 5.6e-11 73.6 340 24.1
Gorai.012G055900 Gossypium raimondii HOM05D020315 ORTHO05D019057 9.6e-11 72.8 267 25.8
FAN09G2665 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.3e-10 72.4 396 23.7
MD14G1026600 Malus domestica HOM05D002400 ORTHO05D002568 1.3e-10 72.4 293 27.0
FvH4_5g29160 Fragaria vesca HOM05D002400 ORTHO05D002568 1.6e-10 72.0 390 23.8
PSO573G0022 Papaver somniferum HOM05D000051 ORTHO05D000015 1.6e-10 72.0 380 23.4
vmacro12123 Vaccinium macrocarpon HOM05D002400 ORTHO05D002568 1.6e-10 72.0 385 24.9
FAN02G4410 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.1e-10 71.6 396 22.5
FAN14G2096 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.1e-10 71.6 396 22.5
FAN06G1414 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.6e-10 70.9 340 25.3
Haze_04775 Corylus avellana HOM05D002400 ORTHO05D002568 4.8e-10 70.5 280 26.1
FAN05G4159 Fragaria x ananassa HOM05D002400 ORTHO05D002568 4.8e-10 70.5 351 24.2
Gohir.D04G050450 Gossypium hirsutum HOM05D020315 ORTHO05D019057 6.2e-10 70.1 267 25.8
FvH4_7g04740 Fragaria vesca HOM05D002400 ORTHO05D002568 8.1e-10 69.7 340 25.0
MD14G1025300 Malus domestica HOM05D002400 ORTHO05D002568 1.1e-09 69.3 351 23.4
RcHm_v2.0_Chr3g0474001 Rosa chinensis HOM05D002400 ORTHO05D002568 1.1e-09 69.3 402 22.4
FAN06G4070 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.8e-09 68.6 340 25.0
Prupe.7G105600 Prunus persica HOM05D002400 ORTHO05D002568 1.8e-09 68.6 331 26.3
TPR.G14580 Trifolium pratense HOM05D000312 ORTHO05D000221 2.4e-09 68.2 283 24.0
FvH4_6g19010 Fragaria vesca HOM05D002400 ORTHO05D002568 3.1e-09 67.8 395 23.0
Gohir.A05G364300 Gossypium hirsutum HOM05D020315 ORTHO05D019057 3.1e-09 67.8 263 25.5
Prupe.7G104800 Prunus persica HOM05D002400 ORTHO05D002568 4.0e-09 67.4 289 27.7
vmacro11751 Vaccinium macrocarpon HOM05D000051 ORTHO05D000015 4.0e-09 67.4 328 23.8
FvH4_6g19030 Fragaria vesca HOM05D002400 ORTHO05D002568 5.3e-09 67.0 397 22.4
FvH4_6g33960 Fragaria vesca HOM05D002400 ORTHO05D002568 5.3e-09 67.0 380 25.8
FAN05G1326 Fragaria x ananassa HOM05D002400 ORTHO05D002568 5.3e-09 67.0 363 25.6
QL02p059625 Quercus lobata HOM05D002400 ORTHO05D002568 5.3e-09 67.0 346 24.9
Prupe.6G269600 Prunus persica HOM05D002400 ORTHO05D002568 6.9e-09 66.6 291 25.1
Haze_24470 Corylus avellana HOM05D002400 ORTHO05D002568 1.2e-08 65.9 422 23.2
RcHm_v2.0_Chr3g0458171 Rosa chinensis HOM05D002400 ORTHO05D002568 1.2e-08 65.9 345 24.1
Aqoxy1G01746 Aquilegia oxysepala HOM05D000051 ORTHO05D000015 1.5e-08 65.5 262 27.1
Carub.0005s1520 Capsella rubella HOM05D000051 ORTHO05D000015 2.0e-08 65.1 271 26.9
FAN19G0785 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.0e-08 65.1 304 23.7
MD14G1025400 Malus domestica HOM05D002400 ORTHO05D002568 2.0e-08 65.1 306 23.2
Oeu034299.1 Olea europaea HOM05D000051 ORTHO05D000015 2.0e-08 65.1 326 24.2
RcHm_v2.0_Chr3g0475381 Rosa chinensis HOM05D002400 ORTHO05D002568 2.6e-08 64.7 214 25.7
FAN05G2337 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.4e-08 64.3 298 25.2
PSO063G5693 Papaver somniferum HOM05D005029 ORTHO05D006052 3.4e-08 64.3 376 23.9
TWI60G1609 Tripterygium wilfordii HOM05D002400 ORTHO05D002568 3.4e-08 64.3 395 23.3
FvH4_6g18920 Fragaria vesca HOM05D002400 ORTHO05D002568 4.4e-08 63.9 329 23.7
FAN26G2620 Fragaria x ananassa HOM05D002400 ORTHO05D002568 4.4e-08 63.9 304 23.7
QL08p019859 Quercus lobata HOM05D000051 ORTHO05D000015 4.4e-08 63.9 341 25.2
FvH4_6g05280 Fragaria vesca HOM05D002400 ORTHO05D002568 5.8e-08 63.5 298 25.2
FAN14G2111 Fragaria x ananassa HOM05D002400 ORTHO05D002568 5.8e-08 63.5 365 23.3
FAN02G1484 Fragaria x ananassa HOM05D002400 ORTHO05D002568 7.6e-08 63.2 246 24.4
FAN09G4054 Fragaria x ananassa HOM05D002400 ORTHO05D002568 7.6e-08 63.2 298 25.2
MD12G1026400 Malus domestica HOM05D002400 ORTHO05D002568 7.6e-08 63.2 322 23.9
Haze_24215 Corylus avellana HOM05D002400 ORTHO05D002568 9.9e-08 62.8 376 20.7
FAN05G0221 Fragaria x ananassa HOM05D002400 ORTHO05D002568 9.9e-08 62.8 417 23.7
FAN14G3479 Fragaria x ananassa HOM05D002959 ORTHO05D003237 9.9e-08 62.8 119 40.3
PSO063G0158 Papaver somniferum HOM05D000051 ORTHO05D000015 9.9e-08 62.8 312 23.7
RcHm_v2.0_Chr5g0049261 Rosa chinensis HOM05D000312 ORTHO05D000221 9.9e-08 62.8 397 24.9
FvH4_1g23521 Fragaria vesca HOM05D002400 ORTHO05D002568 1.3e-07 62.4 301 24.9
COL.COLO4_25202 Corchorus olitorius HOM05D020315 ORTHO05D019057 1.7e-07 62.0 218 25.2
FAN14G5637 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.7e-07 62.0 302 25.8
MD14G1157200 Malus domestica HOM05D002400 ORTHO05D002568 1.7e-07 62.0 295 25.4
Medtr2g047872 Medicago truncatula HOM05D000312 ORTHO05D000221 1.7e-07 62.0 241 29.0
BcaNung02445 Brassica carinata HOM05D000051 ORTHO05D000015 2.2e-07 61.6 345 25.5
FvH4_6g22710 Fragaria vesca HOM05D002400 ORTHO05D002568 2.2e-07 61.6 409 23.2
FAN08G1320 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.2e-07 61.6 217 26.7
FAN10G1459 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.2e-07 61.6 284 24.6
Medtr1g016310 Medicago truncatula HOM05D000312 ORTHO05D000221 2.2e-07 61.6 252 27.4
AT2G04230 Arabidopsis thaliana HOM05D000051 ORTHO05D000015 2.9e-07 61.2 285 26.3
FAN03G0307 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.9e-07 61.2 368 23.6
MD14G1025600 Malus domestica HOM05D002400 ORTHO05D002568 2.9e-07 61.2 353 24.6
RcHm_v2.0_Chr3g0474171 Rosa chinensis HOM05D002400 ORTHO05D002568 2.9e-07 61.2 362 24.0
Actinidia01937 Actinidia chinensis HOM05D001396 ORTHO05D000493 3.8e-07 60.8 291 24.4
FAN05G0305 Fragaria x ananassa HOM05D002400 ORTHO05D002568 4.9e-07 60.5 298 24.8
PSO339G2142 Papaver somniferum HOM05D000051 ORTHO05D000015 4.9e-07 60.5 372 22.3
RcHm_v2.0_Chr3g0474111 Rosa chinensis HOM05D002400 ORTHO05D002568 4.9e-07 60.5 311 23.5
vmacro12215 Vaccinium macrocarpon HOM05D002400 ORTHO05D002568 4.9e-07 60.5 210 27.1
FAN02G2106 Fragaria x ananassa HOM05D002400 ORTHO05D002568 8.4e-07 59.7 155 27.7
FAN09G3427 Fragaria x ananassa HOM05D002400 ORTHO05D002568 8.4e-07 59.7 410 22.9
FAN14G5260 Fragaria x ananassa HOM05D002400 ORTHO05D002568 8.4e-07 59.7 411 23.1
Glyma.08G196750 Glycine max HOM05D001477 ORTHO05D001182 8.4e-07 59.7 246 25.6
Prupe.6G311700 Prunus persica HOM05D002400 ORTHO05D002568 8.4e-07 59.7 286 24.5
RhsimUnG0031600 Rhododendron simsii HOM05D000051 ORTHO05D000015 8.4e-07 59.7 329 25.2
Carub.0005s1915 Capsella rubella HOM05D000051 ORTHO05D000015 1.1e-06 59.3 221 27.1
RcHm_v2.0_Chr5g0028431 Rosa chinensis HOM05D000051 ORTHO05D000015 1.1e-06 59.3 327 25.1
vmacro11750 Vaccinium macrocarpon HOM05D000051 ORTHO05D000015 1.1e-06 59.3 285 25.3
Hma1.2p1_2867F.1_g329630 Hydrangea macrophylla HOM05D001396 ORTHO05D000493 1.4e-06 58.9 358 24.0
A07p24400 Brassica napus HOM05D000689 ORTHO05D000015 1.9e-06 58.5 291 25.1
Nn1g07075 Nelumbo nucifera HOM05D000051 ORTHO05D000015 1.9e-06 58.5 381 23.6
RcHm_v2.0_Chr1g0330111 Rosa chinensis HOM05D002400 ORTHO05D002568 1.9e-06 58.5 226 25.2
Carub.0005s1522 Capsella rubella HOM05D000051 ORTHO05D000015 2.4e-06 58.2 224 27.7
Dinv02729 Davidia involucrata HOM05D002400 ORTHO05D002568 2.4e-06 58.2 331 23.9
FAN14G3389 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.4e-06 58.2 302 25.5
PSO170G6786 Papaver somniferum HOM05D000051 ORTHO05D000015 2.4e-06 58.2 291 24.4
RcHm_v2.0_Chr3g0473911 Rosa chinensis HOM05D002400 ORTHO05D002568 2.4e-06 58.2 379 21.6
FAN04G1411 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.2e-06 57.8 153 32.0
RcHm_v2.0_Chr3g0481121 Rosa chinensis HOM05D002400 ORTHO05D002568 3.2e-06 57.8 250 26.0
Dinv18997 Davidia involucrata HOM05D001396 ORTHO05D000493 4.2e-06 57.4 378 25.1
QL08p020709 Quercus lobata HOM05D000051 ORTHO05D000015 4.2e-06 57.4 199 28.1
Rhsim04G0020200 Rhododendron simsii HOM05D000051 ORTHO05D000015 4.2e-06 57.4 319 25.4
Carub.0005s0502 Capsella rubella HOM05D000051 ORTHO05D000015 5.4e-06 57.0 268 28.0
COL.COLO4_31775 Corchorus olitorius HOM05D002890 ORTHO05D005855 5.4e-06 57.0 277 24.5
Thhalv10013489m.g Eutrema salsugineum HOM05D000051 ORTHO05D000015 5.4e-06 57.0 331 21.1
PSO541G0345 Papaver somniferum HOM05D000051 ORTHO05D000015 5.4e-06 57.0 392 24.5
RcHm_v2.0_Chr3g0474141 Rosa chinensis HOM05D002400 ORTHO05D002568 5.4e-06 57.0 324 24.1
BcaB02g07493 Brassica carinata HOM05D000689 ORTHO05D000015 7.1e-06 56.6 326 23.3
Aa31LG3G12300 Aethionema arabicum HOM05D000051 ORTHO05D000015 9.3e-06 56.2 282 25.9
CARHR157840 Cardamine hirsuta HOM05D000051 ORTHO05D000015 9.3e-06 56.2 208 27.9


User provided reference genes

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