Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G1924 Fragaria x ananassa HOM05D006417 ORTHO05D008113 5.2e-51 204.1 106 100.0
FvH4_1g16510 Fragaria vesca HOM05D006417 ORTHO05D008113 1.5e-50 202.6 106 99.1
RcHm_v2.0_Chr2g0106421 Rosa chinensis HOM05D006417 ORTHO05D008113 2.0e-18 95.9 54 98.1
FAN26G3442 Fragaria x ananassa HOM05D006417 ORTHO05D008113 3.7e-17 91.7 54 98.1
FAN02G0035 Fragaria x ananassa HOM05D006417 ORTHO05D008113 6.4e-17 90.9 54 92.6
Lj5A59T64 Lonicera japonica HOM05D006417 ORTHO05D008113 6.4e-17 90.9 54 92.6
RcHm_v2.0_Chr2g0138111 Rosa chinensis HOM05D006417 ORTHO05D008113 6.4e-17 90.9 54 92.6
FAN14G4157 Fragaria x ananassa HOM05D006417 ORTHO05D008113 8.3e-17 90.5 54 92.6
FAN05G1876 Fragaria x ananassa HOM05D006417 ORTHO05D008113 1.4e-16 89.7 54 90.7
FAN09G4522 Fragaria x ananassa HOM05D006417 ORTHO05D008113 1.9e-16 89.4 54 90.7
HPP92_003724 Vanilla planifolia HOM05D002497 ORTHO05D002697 4.1e-16 88.2 54 90.7
DCAR_023056 Daucus carota HOM05D006417 ORTHO05D008113 1.2e-15 86.7 51 94.1
Prupe.3G069900 Prunus persica HOM05D006417 ORTHO05D008113 1.2e-15 86.7 54 87.0
TAR626G0232 Trochodendron aralioides HOM05D006417 ORTHO05D008113 1.2e-15 86.7 54 88.9
Hma1.2p1_2039F.1_g312170 Hydrangea macrophylla HOM05D006417 ORTHO05D008113 1.6e-15 86.3 54 87.0
Ciclev10026914m.g Citrus clementina HOM05D006417 ORTHO05D008113 2.1e-15 85.9 54 87.0
Sed0026778 Sechium edule HOM05D006417 ORTHO05D008113 2.1e-15 85.9 54 87.0
Aqoxy7G03790 Aquilegia oxysepala HOM05D006417 ORTHO05D008113 2.7e-15 85.5 54 87.0
Migut.D01026 Erythranthe guttata HOM05D006417 ORTHO05D008113 2.7e-15 85.5 54 87.0
ATR0724G030 Amborella trichopoda HOM05D006417 ORTHO05D008113 3.5e-15 85.1 54 85.2
AL1G27360 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 3.5e-15 85.1 54 87.0
AT1G15270 Arabidopsis thaliana HOM05D006417 ORTHO05D008113 3.5e-15 85.1 54 87.0
BcaC07g38776 Brassica carinata HOM05D006417 ORTHO05D008113 3.5e-15 85.1 54 87.0
BcaC07g41515 Brassica carinata HOM05D006417 ORTHO05D008113 3.5e-15 85.1 54 87.0
A08p31670 Brassica napus HOM05D006417 ORTHO05D008113 3.5e-15 85.1 54 87.0
A09p61510 Brassica napus HOM05D006417 ORTHO05D008113 3.5e-15 85.1 54 87.0
C08p17070 Brassica napus HOM05D006417 ORTHO05D008113 3.5e-15 85.1 54 87.0
BolC8t49333H Brassica oleracea HOM05D006417 ORTHO05D008113 3.5e-15 85.1 54 87.0
Carub.0001s1503 Capsella rubella HOM05D006417 ORTHO05D008113 3.5e-15 85.1 54 87.0
CARHR015790 Cardamine hirsuta HOM05D006417 ORTHO05D008113 3.5e-15 85.1 54 87.0
Sp1g13580 Schrenkiella parvula HOM05D006417 ORTHO05D008113 3.5e-15 85.1 54 87.0
MBI06_g06678_MAGBIO Magnolia biondii HOM05D006417 ORTHO05D008113 4.6e-15 84.7 54 85.2
BcaB03g13069 Brassica carinata HOM05D006417 ORTHO05D008113 6.0e-15 84.3 54 85.2
CsaV3_3G010850 Cucumis sativus L. HOM05D006417 ORTHO05D008113 6.0e-15 84.3 54 85.2
MD17G1194100 Malus domestica HOM05D006417 ORTHO05D008113 6.0e-15 84.3 54 87.0
SalBow2G2995 Salvia bowleyana HOM05D006417 ORTHO05D008113 6.0e-15 84.3 54 85.2
Aa31LG4G200 Aethionema arabicum HOM05D006417 ORTHO05D008113 7.8e-15 84.0 54 85.2
Aqoxy7G01686 Aquilegia oxysepala HOM05D006417 ORTHO05D008113 7.8e-15 84.0 54 85.2
SalBow2G0478 Salvia bowleyana HOM05D008308 ORTHO05D008113 1.3e-14 83.2 54 85.2
Aa31LG8G3190 Aethionema arabicum HOM05D006417 ORTHO05D008113 1.7e-14 82.8 54 83.3
BcaC05g25455 Brassica carinata HOM05D006417 ORTHO05D008113 1.7e-14 82.8 54 83.3
BcaC05g25459 Brassica carinata HOM05D006417 ORTHO05D008113 1.7e-14 82.8 54 83.3
BcaNung06587 Brassica carinata HOM05D006417 ORTHO05D008113 1.7e-14 82.8 53 86.8
ClCG05G003220 Citrullus lanatus HOM05D006417 ORTHO05D008113 1.7e-14 82.8 54 83.3
Gohir.A09G082600 Gossypium hirsutum HOM05D006417 ORTHO05D008113 1.7e-14 82.8 54 83.3
Sed0004760 Sechium edule HOM05D006417 ORTHO05D008113 1.7e-14 82.8 54 83.3
unitig_27.g25076 Utricularia gibba HOM05D006417 ORTHO05D008113 2.3e-14 82.4 54 85.2
Gohir.D09G082500 Gossypium hirsutum HOM05D006417 ORTHO05D008113 3.9e-14 81.6 54 81.5
Thecc.06G089800 Theobroma cacao HOM05D006417 ORTHO05D008113 3.9e-14 81.6 54 81.5
ClCG02G009660 Citrullus lanatus HOM05D006417 ORTHO05D008113 5.1e-14 81.3 54 81.5
Nn2g11755 Nelumbo nucifera HOM05D006417 ORTHO05D008113 6.6e-14 80.9 61 75.4
CANSAT56G0242 Cannabis sativa HOM05D006417 ORTHO05D008113 8.6e-14 80.5 54 81.5
Glyma.08G206000 Glycine max HOM05D006417 ORTHO05D008113 1.1e-13 80.1 54 79.6
Potri.001G181800 Populus trichocarpa HOM05D006417 ORTHO05D008113 1.1e-13 80.1 54 81.5
SGA_v2.0_scaffold37G14829 Striga asiatica HOM05D006417 ORTHO05D008113 1.1e-13 80.1 52 86.5
Glyma.07G005600 Glycine max HOM05D006417 ORTHO05D008113 1.5e-13 79.7 54 79.6
Medtr4g012800 Medicago truncatula HOM05D006417 ORTHO05D008113 1.5e-13 79.7 54 79.6
Phvul.010G150000 Phaseolus vulgaris HOM05D006417 ORTHO05D008113 1.5e-13 79.7 54 79.6
Psat7g250440 Pisum sativum HOM05D006417 ORTHO05D008113 1.5e-13 79.7 54 79.6
AL3G28690 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 1.9e-13 79.3 54 79.6
AL810U10020 Arabidopsis lyrata HOM05D006417 ORTHO05D008113 1.9e-13 79.3 54 79.6
AT3G16040 Arabidopsis thaliana HOM05D006417 ORTHO05D008113 1.9e-13 79.3 54 79.6
COL.COLO4_30395 Corchorus olitorius HOM05D006417 ORTHO05D008113 1.9e-13 79.3 54 83.3
Lj3g0004039 Lotus japonicus HOM05D006417 ORTHO05D008113 1.9e-13 79.3 54 79.6
Lalb_Chr01g0012721 Lupinus albus HOM05D006417 ORTHO05D008113 1.9e-13 79.3 54 79.6
A06p11260 Brassica napus HOM05D006417 ORTHO05D008113 5.6e-13 77.8 51 84.3
C08p45090 Brassica napus HOM05D006417 ORTHO05D008113 5.6e-13 77.8 51 84.3
BolC8t52055H Brassica oleracea HOM05D006417 ORTHO05D008113 5.6e-13 77.8 51 84.3
BraA06t24306Z Brassica rapa HOM05D006417 ORTHO05D008113 5.6e-13 77.8 51 84.3
BraA09t41524Z Brassica rapa HOM05D006417 ORTHO05D008113 5.6e-13 77.8 51 84.3
Carub.0003s1577 Capsella rubella HOM05D006417 ORTHO05D008113 5.6e-13 77.8 54 77.8
Hund06616 Selenicereus undatus HOM05D006417 ORTHO05D008113 7.3e-13 77.4 54 81.5
Sc12g0009320 Simmondsia chinensis HOM05D006417 ORTHO05D008113 7.3e-13 77.4 54 81.5
Atru.chr1.3302 Acer truncatum HOM05D006417 ORTHO05D008113 9.5e-13 77.0 54 75.9
Thhalv10022282m.g Eutrema salsugineum HOM05D006417 ORTHO05D008113 9.5e-13 77.0 54 77.8
C05p50430 Brassica napus HOM05D006417 ORTHO05D008113 1.2e-12 76.6 54 77.8
Cpa.g.sc41.8 Carica papaya HOM05D006417 ORTHO05D008113 1.2e-12 76.6 60 76.7
Cc04_g03270 Coffea canephora HOM05D006417 ORTHO05D008113 1.2e-12 76.6 54 85.2
Migut.I00879 Erythranthe guttata HOM05D006417 ORTHO05D008113 1.2e-12 76.6 50 84.0
Oeu063955.1 Olea europaea HOM05D006417 ORTHO05D008113 1.2e-12 76.6 54 85.2
Glyma.20G047300 Glycine max HOM05D006417 ORTHO05D008113 1.6e-12 76.3 54 75.9
Gorai.006G098200 Gossypium raimondii HOM05D006417 ORTHO05D008113 1.6e-12 76.3 64 70.3
Manes.04G124600 Manihot esculenta HOM05D006417 ORTHO05D008113 1.6e-12 76.3 63 73.0
CSS0028003 Camellia sinensis var. sinensis HOM05D006417 ORTHO05D008113 2.1e-12 75.9 48 85.4
CARHR091200 Cardamine hirsuta HOM05D006417 ORTHO05D008113 2.1e-12 75.9 54 77.8
Dinv38039 Davidia involucrata HOM05D006417 ORTHO05D008113 2.1e-12 75.9 54 83.3
Pp3c23_11500 Physcomitrium patens HOM05D006417 ORTHO05D008113 2.1e-12 75.9 54 77.8
BolC5t30076H Brassica oleracea HOM05D006417 ORTHO05D008113 2.8e-12 75.5 51 80.4
Glyma.14G136351 Glycine max HOM05D006417 ORTHO05D008113 2.8e-12 75.5 53 77.4
HanXRQChr04g0096081 Helianthus annuus HOM05D006417 ORTHO05D008113 3.6e-12 75.1 54 83.3
Eucgr.J02983 Eucalyptus grandis HOM05D006417 ORTHO05D008113 4.7e-12 74.7 49 85.7
GSVIVG01017091001 Vitis vinifera HOM05D006417 ORTHO05D008113 4.7e-12 74.7 54 81.5
CiPaw.01G238100 Carya illinoinensis HOM05D006417 ORTHO05D008113 6.2e-12 74.3 54 83.3
Haze_16401 Corylus avellana HOM05D006417 ORTHO05D008113 6.2e-12 74.3 54 81.5
Lsat_1_v5_gn_5_130340 Lactuca sativa HOM05D006417 ORTHO05D008113 8.1e-12 73.9 54 81.5
Pp3c24_10010 Physcomitrium patens HOM05D006417 ORTHO05D008113 8.1e-12 73.9 54 77.8
HanXRQChr12g0376701 Helianthus annuus HOM05D006417 ORTHO05D008113 1.1e-11 73.6 54 81.5
Zm00001eb225700 Zea mays HOM05D006417 ORTHO05D008113 1.4e-11 73.2 52 86.5
ECA247G1523 Erigeron canadensis HOM05D001142 ORTHO05D004628 1.8e-11 72.8 54 81.5
Sp3g14390 Schrenkiella parvula HOM05D006417 ORTHO05D008113 1.8e-11 72.8 54 75.9
DCAR_007563 Daucus carota HOM05D006417 ORTHO05D008113 2.3e-11 72.4 54 79.6
DCAR_026325 Daucus carota HOM05D006417 ORTHO05D008113 2.3e-11 72.4 54 79.6
AagrBONN_evm.TU.Sc2ySwM_117.2290 Anthoceros agrestis HOM05D006417 ORTHO05D008113 3.1e-11 72.0 54 75.9
EL10Ac9g22008 Beta vulgaris HOM05D006417 ORTHO05D008113 3.1e-11 72.0 54 74.1
CiPaw.02G150500 Carya illinoinensis HOM05D006417 ORTHO05D008113 4.0e-11 71.6 54 79.6
Mapoly0091s0070 Marchantia polymorpha HOM05D006417 ORTHO05D008113 5.2e-11 71.2 54 74.1
Peaxi162Scf00034g00611 Petunia axillaris HOM05D006417 ORTHO05D008113 5.2e-11 71.2 54 79.6
Lj3g0012949 Lotus japonicus HOM05D006417 ORTHO05D008113 8.9e-11 70.5 55 76.4
PGSC0003DMG400007579 Solanum tuberosum HOM05D006417 ORTHO05D008113 8.9e-11 70.5 54 79.6
Solyc12g043160.3 Solanum lycopersicum HOM05D006417 ORTHO05D008113 1.2e-10 70.1 54 79.6
A05p33430 Brassica napus HOM05D006417 ORTHO05D008113 2.6e-10 68.9 52 73.1
Thhalv10009202m.g Eutrema salsugineum HOM05D006417 ORTHO05D008113 5.8e-10 67.8 82 54.9
BcaC05g28917 Brassica carinata HOM05D006417 ORTHO05D008113 1.3e-09 66.6 63 65.1
DCAR_002649 Daucus carota HOM05D006417 ORTHO05D008113 1.3e-09 66.6 49 79.6
arahy.Tifrunner.gnm1.ann1.6441EL Arachis hypogaea HOM05D006417 ORTHO05D008113 1.7e-09 66.2 79 54.4
Lsat_1_v5_gn_1_35180 Lactuca sativa HOM05D006417 ORTHO05D008113 6.4e-09 64.3 51 74.5
CAN.G144.3 Capsicum annuum HOM05D006417 ORTHO05D008113 3.5e-07 58.5 49 75.5
ClCG11G012700 Citrullus lanatus HOM05D006417 ORTHO05D008113 1.0e-06 57.0 51 66.7


User provided reference genes

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