Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g03790 Fragaria vesca HOM05D007077 ORTHO05D008853 2.8e-57 224.9 106 100.0
FAN19G1922 Fragaria x ananassa HOM05D007077 ORTHO05D008853 2.8e-57 224.9 106 100.0
FAN23G2971 Fragaria x ananassa HOM05D007077 ORTHO05D008853 8.2e-57 223.4 106 99.1
FAN26G2340 Fragaria x ananassa HOM05D007077 ORTHO05D008853 8.2e-57 223.4 106 99.1
RcHm_v2.0_Chr2g0089201 Rosa chinensis HOM05D007077 ORTHO05D008853 1.9e-53 212.2 106 92.5
MD02G1036500 Malus domestica HOM05D007077 ORTHO05D008853 2.0e-47 192.2 106 81.1
CiPaw.03G240800 Carya illinoinensis HOM05D007077 ORTHO05D008853 1.7e-46 189.1 106 80.2
Prupe.7G238900 Prunus persica HOM05D007077 ORTHO05D008853 5.0e-46 187.6 106 77.4
Duzib150G1251 Durio zibethinus HOM05D007077 ORTHO05D008853 1.1e-45 186.4 106 77.4
Duzib168G0686 Durio zibethinus HOM05D007077 ORTHO05D008853 9.5e-45 183.3 106 75.5
Thecc.09G122000 Theobroma cacao HOM05D007077 ORTHO05D008853 1.2e-44 183.0 106 73.6
Gohir.A05G018500 Gossypium hirsutum HOM05D007077 ORTHO05D008853 1.0e-43 179.9 106 72.6
Gohir.D05G019400 Gossypium hirsutum HOM05D007077 ORTHO05D008853 3.0e-43 178.3 106 71.7
Gorai.009G019800 Gossypium raimondii HOM05D007077 ORTHO05D008853 4.0e-43 177.9 106 71.7
COL.COLO4_35188 Corchorus olitorius HOM05D007077 ORTHO05D008853 5.2e-43 177.6 106 71.7
QL02p087620 Quercus lobata HOM05D007077 ORTHO05D008853 5.2e-43 177.6 105 73.3
Eucgr.C04175 Eucalyptus grandis HOM05D007077 ORTHO05D008853 6.8e-43 177.2 106 71.7
GSVIVG01035379001 Vitis vinifera HOM05D007077 ORTHO05D008853 2.6e-42 175.3 105 70.5
Actinidia07437 Actinidia chinensis HOM05D007077 ORTHO05D008853 4.4e-42 174.5 103 72.8
COL.COLO4_05999 Corchorus olitorius HOM05D007077 ORTHO05D008853 4.4e-42 174.5 104 71.2
Atru.chr7.1226 Acer truncatum HOM05D007077 ORTHO05D008853 2.2e-41 172.2 106 70.8
MBI04_g10421_MAGBIO Magnolia biondii HOM05D007077 ORTHO05D008853 2.8e-41 171.8 103 70.9
Potri.003G137900 Populus trichocarpa HOM05D007077 ORTHO05D008853 6.3e-41 170.6 106 69.8
TWI63G0911 Tripterygium wilfordii HOM05D007077 ORTHO05D008853 1.4e-40 169.5 106 68.9
VMungo1215G0506 Vigna mungo HOM05D007077 ORTHO05D008853 1.8e-40 169.1 106 70.8
Psat4g041880 Pisum sativum HOM05D007077 ORTHO05D008853 2.4e-40 168.7 105 70.5
Sabra03G0099300 Salix brachista HOM05D007077 ORTHO05D008853 3.1e-40 168.3 106 68.9
TPR.G10683 Trifolium pratense HOM05D007077 ORTHO05D008853 7.0e-40 167.2 105 70.5
Manes.06G053400 Manihot esculenta HOM05D007077 ORTHO05D008853 1.2e-39 166.4 106 67.9
BolC6t38404H Brassica oleracea HOM05D007077 ORTHO05D008853 2.0e-39 165.6 101 68.3
TAR636G1135 Trochodendron aralioides HOM05D007077 ORTHO05D008853 2.0e-39 165.6 103 64.1
Lalb_Chr07g0178761 Lupinus albus HOM05D007077 ORTHO05D008853 2.7e-39 165.2 104 69.2
Cpa.g.sc75.76 Carica papaya HOM05D007077 ORTHO05D008853 3.5e-39 164.9 96 74.0
Glyma.17G117400 Glycine max HOM05D007077 ORTHO05D008853 3.5e-39 164.9 103 69.9
arahy.Tifrunner.gnm1.ann1.7ZPA8Y Arachis hypogaea HOM05D007077 ORTHO05D008853 4.5e-39 164.5 102 71.6
arahy.Tifrunner.gnm1.ann1.BTXG8Q Arachis hypogaea HOM05D007077 ORTHO05D008853 4.5e-39 164.5 102 71.6
Lj4g0023379 Lotus japonicus HOM05D007077 ORTHO05D008853 5.9e-39 164.1 101 73.3
Phvul.003G162000 Phaseolus vulgaris HOM05D007077 ORTHO05D008853 5.9e-39 164.1 106 67.9
A07p29070 Brassica napus HOM05D007077 ORTHO05D008853 7.8e-39 163.7 102 66.7
BcaB02g06994 Brassica carinata HOM05D007077 ORTHO05D008853 1.7e-38 162.5 101 67.3
C06p32830 Brassica napus HOM05D007077 ORTHO05D008853 1.7e-38 162.5 101 67.3
Glyma.05G009400 Glycine max HOM05D007077 ORTHO05D008853 1.7e-38 162.5 103 68.9
CSS0046716 Camellia sinensis var. sinensis HOM05D007077 ORTHO05D008853 2.3e-38 162.2 103 68.0
Rhsim03G0246400 Rhododendron simsii HOM05D007077 ORTHO05D008853 2.3e-38 162.2 103 68.0
THA.LOC104826537 Tarenaya hassleriana HOM05D007077 ORTHO05D008853 5.0e-38 161.0 104 65.4
vmacro06174 Vaccinium macrocarpon HOM05D007077 ORTHO05D008853 6.6e-38 160.6 103 67.0
Sed0015086 Sechium edule HOM05D007077 ORTHO05D008853 8.6e-38 160.2 104 66.3
BcaB05g24885 Brassica carinata HOM05D007077 ORTHO05D008853 1.5e-37 159.5 100 67.0
Phvul.003G161700 Phaseolus vulgaris HOM05D007077 ORTHO05D008853 1.5e-37 159.5 101 68.3
Thhalv10019349m.g Eutrema salsugineum HOM05D007077 ORTHO05D008853 1.9e-37 159.1 101 67.3
Dinv36561 Davidia involucrata HOM05D007077 ORTHO05D008853 2.5e-37 158.7 103 66.0
Medtr4g113750 Medicago truncatula HOM05D007077 ORTHO05D008853 4.3e-37 157.9 94 73.4
Sp5g30250 Schrenkiella parvula HOM05D007077 ORTHO05D008853 7.3e-37 157.1 101 64.4
CARHR068440 Cardamine hirsuta HOM05D007077 ORTHO05D008853 3.6e-36 154.8 104 64.4
CSS0033721 Camellia sinensis var. sinensis HOM05D007077 ORTHO05D008853 5.2e-35 151.0 90 71.1
AL2G35020 Arabidopsis lyrata HOM05D007077 ORTHO05D008853 6.8e-35 150.6 103 62.1
Ciclev10010021m.g Citrus clementina HOM05D007077 ORTHO05D008853 6.8e-35 150.6 91 73.6
AT1G75125 Arabidopsis thaliana HOM05D007077 ORTHO05D008853 8.9e-35 150.2 101 62.4
Aa31LG4G5320 Aethionema arabicum HOM05D007077 ORTHO05D008853 1.2e-34 149.8 100 63.0
BcaB02g07008 Brassica carinata HOM05D007077 ORTHO05D008853 1.5e-34 149.4 102 60.8
Actinidia26405 Actinidia chinensis HOM05D007077 ORTHO05D008853 2.0e-34 149.1 84 76.2
Carub.0002s2191 Capsella rubella HOM05D007077 ORTHO05D008853 2.6e-34 148.7 101 62.4
PGR102G1835 Punica granatum HOM05D007077 ORTHO05D008853 3.4e-34 148.3 106 62.3
CsaV3_2G002680 Cucumis sativus L. HOM05D007077 ORTHO05D008853 1.3e-33 146.4 104 62.5
BraA07t30546Z Brassica rapa HOM05D007077 ORTHO05D008853 2.2e-33 145.6 102 60.8
QL02p031889 Quercus lobata HOM05D007077 ORTHO05D008853 2.2e-33 145.6 101 68.3
QL93p2004_0148 Quercus lobata HOM05D007077 ORTHO05D008853 2.2e-33 145.6 101 68.3
CDE06G0710 Ceratophyllum demersum HOM05D007077 ORTHO05D008853 3.7e-33 144.8 103 60.2
Haze_25634 Corylus avellana HOM05D007077 ORTHO05D008853 3.7e-33 144.8 92 70.7
CARHR068450 Cardamine hirsuta HOM05D007077 ORTHO05D008853 4.9e-33 144.4 104 60.6
Pp3c10_2110 Physcomitrium patens HOM05D007077 ORTHO05D008853 6.4e-33 144.1 100 60.0
Os01g0612800 Oryza sativa ssp. japonica HOM05D007077 ORTHO05D008853 1.1e-32 143.3 101 59.4
BcaC03g15541 Brassica carinata HOM05D007077 ORTHO05D008853 5.4e-32 141.0 101 60.4
BolC2t09261H Brassica oleracea HOM05D007077 ORTHO05D008853 5.4e-32 141.0 101 60.4
A02p19700 Brassica napus HOM05D007077 ORTHO05D008853 1.6e-31 139.4 106 57.5
BraA02t07006Z Brassica rapa HOM05D007077 ORTHO05D008853 1.6e-31 139.4 106 57.5
QL05p072824 Quercus lobata HOM05D003311 ORTHO05D008853 1.6e-31 139.4 91 67.0
Hma1.2p1_0665F.1_g199210 Hydrangea macrophylla HOM05D007077 ORTHO05D008853 3.0e-30 135.2 63 85.7
ClCG11G002840 Citrullus lanatus HOM05D007077 ORTHO05D008853 3.9e-30 134.8 123 53.7
Mapoly0015s0040 Marchantia polymorpha HOM05D007077 ORTHO05D008853 3.9e-30 134.8 99 57.6
Ah.05g167190 Amaranthus hybridus HOM05D007077 ORTHO05D008853 3.3e-29 131.7 102 56.9
Nitab4.5_0000167g0170 Nicotiana tabacum HOM05D007077 ORTHO05D008853 7.3e-29 130.6 103 57.3
CDE07G1647 Ceratophyllum demersum HOM05D007077 ORTHO05D008853 1.6e-28 129.4 84 66.7
Hund09149 Selenicereus undatus HOM05D007077 ORTHO05D008853 4.7e-28 127.9 98 55.1
Sed0025696 Sechium edule HOM05D007077 ORTHO05D008853 1.4e-27 126.3 93 59.1
Peaxi162Scf01013g00228 Petunia axillaris HOM05D007077 ORTHO05D008853 2.0e-26 122.5 103 54.4
CAN.G307.7 Capsicum annuum HOM05D007077 ORTHO05D008853 3.4e-26 121.7 103 52.4
Manes.14G129700 Manihot esculenta HOM05D007077 ORTHO05D008853 7.5e-26 120.6 91 57.1
EL10Ac8g18603 Beta vulgaris HOM05D007077 ORTHO05D008853 1.3e-25 119.8 88 58.0
CDE07G0486 Ceratophyllum demersum HOM05D007077 ORTHO05D008853 1.3e-25 119.8 75 66.7
AagrBONN_evm.TU.Sc2ySwM_368.923 Anthoceros agrestis HOM05D007077 ORTHO05D008853 6.4e-25 117.5 100 48.0
Oeu055966.1 Olea europaea HOM05D007077 ORTHO05D008853 1.1e-24 116.7 103 51.5
Sopen03g004510 Solanum pennellii HOM05D007077 ORTHO05D008853 1.1e-24 116.7 103 51.5
SalBow6G6978 Salvia bowleyana HOM05D007077 ORTHO05D008853 1.4e-24 116.3 102 51.0
SMO137G0334 Selaginella moellendorffii HOM05D007077 ORTHO05D008853 2.4e-24 115.5 97 52.6
MSTRG.10653 Avicennia marina HOM05D007077 ORTHO05D008853 3.5e-23 111.7 100 50.0
Solyc03g025690.4 Solanum lycopersicum HOM05D007077 ORTHO05D008853 4.6e-23 111.3 103 48.5
SGA_v2.0_scaffold51G18726 Striga asiatica HOM05D007077 ORTHO05D008853 7.8e-23 110.5 101 48.5
Migut.K00414 Erythranthe guttata HOM05D007077 ORTHO05D008853 1.0e-22 110.2 100 50.0
Cc09_g03400 Coffea canephora HOM05D007077 ORTHO05D008853 1.7e-22 109.4 63 66.7
Lsat_1_v5_gn_5_98981 Lactuca sativa HOM05D007077 ORTHO05D008853 3.0e-22 108.6 100 49.0
GSVIVG01015495001 Vitis vinifera HOM05D007077 ORTHO05D008853 2.5e-21 105.5 64 68.8
HanXRQChr01g0017151 Helianthus annuus HOM05D007077 ORTHO05D008853 5.6e-21 104.4 107 45.8
MELO3C031577.2 Cucumis melo HOM05D007077 ORTHO05D008853 1.4e-19 99.8 92 51.1
HanXRQChr12g0356451 Helianthus annuus HOM05D007077 ORTHO05D008853 1.2e-18 96.7 111 42.3
Nitab4.5_0001579g0110 Nicotiana tabacum HOM05D007077 ORTHO05D008853 3.4e-18 95.1 110 40.9
PGSC0003DMG400014298 Solanum tuberosum HOM05D007077 ORTHO05D008853 1.7e-17 92.8 91 47.3
C02p32320 Brassica napus HOM05D007077 ORTHO05D008853 1.4e-16 89.7 49 75.5
CBR_g10839 Chara braunii HOM05D001161 ORTHO05D000497 5.2e-11 71.2 93 37.6
MCO14G029 Micromonas commoda HOM05D007077 ORTHO05D008853 6.8e-11 70.9 100 34.0
QL03p062338 Quercus lobata HOM05D007077 ORTHO05D008853 6.4e-09 64.3 59 59.3


User provided reference genes

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