Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G1549 Fragaria x ananassa HOM05D005262 ORTHO05D006590 2.9e-122 442.2 268 100.0
FvH4_1g30250 Fragaria vesca HOM05D005262 ORTHO05D006590 4.3e-102 375.2 238 98.3
FAN26G2856 Fragaria x ananassa HOM05D005262 ORTHO05D006590 1.3e-98 363.6 188 97.9
FAN23G1362 Fragaria x ananassa HOM05D005262 ORTHO05D006590 1.6e-96 356.7 187 96.8
Prupe.2G171300 Prunus persica HOM05D005262 ORTHO05D006590 1.3e-77 293.9 187 80.2
ClCG00G005120 Citrullus lanatus HOM05D005262 ORTHO05D006590 1.4e-76 290.4 193 76.2
ClCG05G024080 Citrullus lanatus HOM05D005262 ORTHO05D006590 1.4e-76 290.4 193 76.2
MD07G1136300 Malus domestica HOM05D005262 ORTHO05D006590 1.2e-75 287.3 187 77.0
MD01G1063000 Malus domestica HOM05D005262 ORTHO05D006590 1.1e-73 280.8 187 75.4
CiPaw.05G130500 Carya illinoinensis HOM05D005262 ORTHO05D006590 1.4e-73 280.4 187 74.3
QL03p069106 Quercus lobata HOM05D005262 ORTHO05D006590 5.5e-73 278.5 186 74.2
QL93p1999_0168 Quercus lobata HOM05D005262 ORTHO05D006590 5.5e-73 278.5 186 74.2
Dinv34128 Davidia involucrata HOM05D005262 ORTHO05D006590 9.3e-73 277.7 191 75.4
Sed0024226 Sechium edule HOM05D005262 ORTHO05D006590 4.6e-72 275.4 185 75.1
MELO3C012117.2 Cucumis melo HOM05D005262 ORTHO05D006590 7.9e-72 274.6 187 74.3
GSVIVG01005152001 Vitis vinifera HOM05D005262 ORTHO05D006590 1.8e-71 273.5 186 74.2
CSS0022308 Camellia sinensis var. sinensis HOM05D005262 ORTHO05D006590 3.0e-71 272.7 186 74.7
Hma1.2p1_1954F.1_g308920 Hydrangea macrophylla HOM05D005262 ORTHO05D006590 3.7e-69 265.8 205 69.3
TWI23G0893 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 4.8e-69 265.4 186 70.4
Nitab4.5_0001147g0090 Nicotiana tabacum HOM05D005262 ORTHO05D006590 1.1e-68 264.2 186 72.6
Nitab4.5_0005903g0020 Nicotiana tabacum HOM05D005262 ORTHO05D006590 1.1e-68 264.2 186 73.7
Cpa.g.sc57.36 Carica papaya HOM05D005262 ORTHO05D006590 1.8e-68 263.5 188 69.1
GSVIVG01012217001 Vitis vinifera HOM05D005262 ORTHO05D006590 4.0e-68 262.3 186 70.4
PGR102G3250 Punica granatum HOM05D005262 ORTHO05D006590 5.3e-68 261.9 184 70.7
CsaV3_5G032960 Cucumis sativus L. HOM05D005262 ORTHO05D006590 6.9e-68 261.5 186 72.6
Lj8C474T0 Lonicera japonica HOM05D005262 ORTHO05D006590 6.9e-68 261.5 184 72.3
Solyc07g017410.3 Solanum lycopersicum HOM05D005262 ORTHO05D006590 1.2e-67 260.8 186 72.6
Sopen07g006120 Solanum pennellii HOM05D005262 ORTHO05D006590 1.2e-67 260.8 186 72.6
PGSC0003DMG400009555 Solanum tuberosum HOM05D005262 ORTHO05D006590 1.2e-67 260.8 186 72.6
CAN.G293.9 Capsicum annuum HOM05D005262 ORTHO05D006590 1.5e-67 260.4 186 72.6
Oeu054855.1 Olea europaea HOM05D005262 ORTHO05D006590 1.5e-67 260.4 186 71.0
Lj7A251G27 Lonicera japonica HOM05D005262 ORTHO05D006590 3.4e-67 259.2 191 69.6
Sc04g0007950 Simmondsia chinensis HOM05D005262 ORTHO05D006590 3.4e-67 259.2 186 70.4
TWI59G0657 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 4.5e-67 258.8 186 68.8
Atru.chr11.1609 Acer truncatum HOM05D005262 ORTHO05D006590 7.6e-67 258.1 185 70.8
Aqoxy2G00811 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 1.0e-66 257.7 186 68.8
Thecc.10G075900 Theobroma cacao HOM05D005262 ORTHO05D006590 6.5e-66 255.0 185 71.9
Aqoxy1G02417 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 8.4e-66 254.6 189 69.3
Peaxi162Scf00320g00123 Petunia axillaris HOM05D005262 ORTHO05D006590 8.4e-66 254.6 201 68.2
CANSAT80G0446 Cannabis sativa HOM05D005262 ORTHO05D006590 1.4e-65 253.8 176 71.0
Cc00_g16620 Coffea canephora HOM05D005262 ORTHO05D006590 1.9e-65 253.4 186 68.8
TAR496G0001 Trochodendron aralioides HOM05D005262 ORTHO05D006590 1.9e-65 253.4 185 66.5
TAR629G1254 Trochodendron aralioides HOM05D005262 ORTHO05D006590 1.9e-65 253.4 185 66.5
Lj7C254T2 Lonicera japonica HOM05D005262 ORTHO05D006590 2.5e-65 253.1 185 70.3
Duzib114G0995 Durio zibethinus HOM05D005262 ORTHO05D006590 3.2e-65 252.7 175 73.7
Rhsim09G0138500 Rhododendron simsii HOM05D005262 ORTHO05D006590 4.2e-65 252.3 191 69.1
Manes.01G033800 Manihot esculenta HOM05D005262 ORTHO05D006590 7.1e-65 251.5 189 67.7
TAR365G0711 Trochodendron aralioides HOM05D005262 ORTHO05D006590 9.3e-65 251.1 190 65.3
DCAR_013139 Daucus carota HOM05D005262 ORTHO05D006590 1.2e-64 250.8 188 68.6
Lj2g0009005 Lotus japonicus HOM05D005262 ORTHO05D006590 1.2e-64 250.8 186 70.4
Cfa008943 Carpinus fangiana HOM05D005262 ORTHO05D006590 2.1e-64 250.0 186 67.7
arahy.Tifrunner.gnm1.ann1.XG4VM3 Arachis hypogaea HOM05D005262 ORTHO05D006590 2.7e-64 249.6 202 66.3
Lj6g0009238 Lotus japonicus HOM05D005262 ORTHO05D006590 3.5e-64 249.2 186 69.4
arahy.Tifrunner.gnm1.ann1.EK09V6 Arachis hypogaea HOM05D005262 ORTHO05D006590 4.6e-64 248.8 202 66.3
Ciclev10032849m.g Citrus clementina HOM05D005262 ORTHO05D006590 4.6e-64 248.8 186 67.7
Lj8C444T0 Lonicera japonica HOM05D005262 ORTHO05D006590 1.3e-63 247.3 206 64.1
SGA_v2.0_scaffold25G10746 Striga asiatica HOM05D005262 ORTHO05D006590 1.8e-63 246.9 189 67.2
MSTRG.11557 Avicennia marina HOM05D005262 ORTHO05D006590 2.3e-63 246.5 189 68.8
Os12g0209100 Oryza sativa ssp. japonica HOM05D005262 ORTHO05D006590 2.3e-63 246.5 182 67.6
VMungo1215G2947 Vigna mungo HOM05D005262 ORTHO05D006590 3.0e-63 246.1 187 68.4
HanXRQChr15g0476911 Helianthus annuus HOM05D005262 ORTHO05D006590 3.9e-63 245.7 184 68.5
Gohir.A05G412300 Gossypium hirsutum HOM05D005262 ORTHO05D006590 6.7e-63 245.0 189 68.3
Migut.O00263 Erythranthe guttata HOM05D005262 ORTHO05D006590 8.7e-63 244.6 182 68.7
Gohir.D04G003700 Gossypium hirsutum HOM05D005262 ORTHO05D006590 8.7e-63 244.6 189 68.8
Gorai.012G004900 Gossypium raimondii HOM05D005262 ORTHO05D006590 8.7e-63 244.6 189 68.8
Ca_02973_v3 Cicer arietinum L. HOM05D005262 ORTHO05D006590 1.9e-62 243.4 189 68.3
HPP92_008614 Vanilla planifolia HOM05D005262 ORTHO05D006590 1.9e-62 243.4 189 66.7
Psat1g094200 Pisum sativum HOM05D005262 ORTHO05D006590 4.3e-62 242.3 187 68.4
TPR.G4647 Trifolium pratense HOM05D005262 ORTHO05D006590 4.3e-62 242.3 186 68.3
AUR62032822 Chenopodium quinoa HOM05D005262 ORTHO05D006590 5.7e-62 241.9 185 66.5
Glyma.01G052200 Glycine max HOM05D005262 ORTHO05D006590 7.4e-62 241.5 187 68.4
SGA_v2.0_scaffold90G27753 Striga asiatica HOM05D005262 ORTHO05D006590 1.3e-61 240.7 189 66.7
Gohir.A10G054500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 1.6e-61 240.4 178 69.7
PSO063G7616 Papaver somniferum HOM05D005262 ORTHO05D006590 2.2e-61 240.0 188 66.0
Glyma.02G110400 Glycine max HOM05D005262 ORTHO05D006590 4.8e-61 238.8 187 67.4
PSO832G0345 Papaver somniferum HOM05D005262 ORTHO05D006590 4.8e-61 238.8 188 65.4
Phvul.003G046600 Phaseolus vulgaris HOM05D005262 ORTHO05D006590 6.3e-61 238.4 187 66.8
ECA246G3166 Erigeron canadensis HOM05D006399 ORTHO05D007988 1.4e-60 237.3 189 65.1
Lalb_Chr12g0202851 Lupinus albus HOM05D005262 ORTHO05D006590 3.1e-60 236.1 174 70.1
Gorai.011G060300 Gossypium raimondii HOM05D005262 ORTHO05D006590 5.3e-60 235.3 178 68.0
HanXRQChr17g0545311 Helianthus annuus HOM05D005262 ORTHO05D006590 1.2e-59 234.2 184 65.8
Potri.010G165500 Populus trichocarpa HOM05D005262 ORTHO05D006590 1.2e-59 234.2 184 64.7
Medtr2g087760 Medicago truncatula HOM05D005262 ORTHO05D006590 3.4e-59 232.6 174 69.5
Medtr8g006800 Medicago truncatula HOM05D005262 ORTHO05D006590 1.7e-58 230.3 174 68.4
QL07p005102 Quercus lobata HOM05D005262 ORTHO05D006590 2.5e-57 226.5 157 72.6
Zm00001eb163570 Zea mays HOM05D005262 ORTHO05D006590 2.5e-57 226.5 185 63.2
Lsat_1_v5_gn_3_51960 Lactuca sativa HOM05D005262 ORTHO05D006590 3.2e-57 226.1 185 63.2
EL10Ac8g18975 Beta vulgaris HOM05D005262 ORTHO05D006590 7.2e-57 224.9 182 63.2
COL.COLO4_28415 Corchorus olitorius HOM05D005262 ORTHO05D006590 7.2e-57 224.9 175 65.7
ATR0810G029 Amborella trichopoda HOM05D005262 ORTHO05D006590 1.6e-56 223.8 189 62.4
Nn4g23238 Nelumbo nucifera HOM05D005262 ORTHO05D006590 3.6e-56 222.6 152 73.0
Sabra10G0125800 Salix brachista HOM05D005262 ORTHO05D006590 3.6e-56 222.6 211 57.3
RcHm_v2.0_Chr6g0271051 Rosa chinensis HOM05D005262 ORTHO05D006590 7.9e-56 221.5 174 71.8
unitig_749.g14151 Utricularia gibba HOM05D005262 ORTHO05D006590 1.8e-55 220.3 185 61.6
Eucgr.I00218 Eucalyptus grandis HOM05D005262 ORTHO05D006590 8.8e-55 218.0 157 68.8
CDE02G1435 Ceratophyllum demersum HOM05D005262 ORTHO05D006590 2.2e-53 213.4 187 61.0
Hund04408 Selenicereus undatus HOM05D005262 ORTHO05D006590 2.2e-53 213.4 281 44.8
THA.LOC104818198 Tarenaya hassleriana HOM05D005262 ORTHO05D006590 8.2e-53 211.5 186 57.0
SalBow6G1526 Salvia bowleyana HOM05D005262 ORTHO05D006590 1.4e-52 210.7 176 61.9
AUR62005827 Chenopodium quinoa HOM05D006399 ORTHO05D007988 4.1e-52 209.1 191 57.1
Aa31LG7G8380 Aethionema arabicum HOM05D005262 ORTHO05D006590 4.2e-49 199.1 185 55.1
Haze_11969 Corylus avellana HOM05D001063 ORTHO05D000986 4.2e-49 199.1 154 65.6
CARHR025210 Cardamine hirsuta HOM05D005262 ORTHO05D006590 2.7e-48 196.4 185 55.7
AL1G38960 Arabidopsis lyrata HOM05D005262 ORTHO05D006590 1.4e-47 194.1 185 56.2
SEGI_18406 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 2.3e-47 193.4 182 53.3
Carub.0001s2427 Capsella rubella HOM05D005262 ORTHO05D006590 5.1e-47 192.2 185 54.6
Thhalv10008835m.g Eutrema salsugineum HOM05D005262 ORTHO05D006590 4.4e-46 189.1 185 54.6
AT1G26750 Arabidopsis thaliana HOM05D005262 ORTHO05D006590 5.7e-46 188.7 185 55.1
Sp1g22060 Schrenkiella parvula HOM05D005262 ORTHO05D006590 2.2e-45 186.8 185 54.6
vmacro10351 Vaccinium macrocarpon HOM05D005262 ORTHO05D006590 2.2e-45 186.8 184 58.7
CAN.G228.3 Capsicum annuum HOM05D005262 ORTHO05D006590 3.7e-45 186.0 207 52.7
A07p13080 Brassica napus HOM05D005262 ORTHO05D006590 2.6e-43 179.9 185 53.5
BraA07t29079Z Brassica rapa HOM05D005262 ORTHO05D006590 1.0e-42 177.9 185 53.5
BcaC06g35126 Brassica carinata HOM05D005262 ORTHO05D006590 1.4e-41 174.1 185 51.9
BcaB03g14087 Brassica carinata HOM05D005262 ORTHO05D006590 4.2e-41 172.6 185 51.4
C07p19560 Brassica napus HOM05D005262 ORTHO05D006590 4.2e-41 172.6 185 51.4
BolC7t42473H Brassica oleracea HOM05D005262 ORTHO05D006590 4.2e-41 172.6 185 51.4
C05p24220 Brassica napus HOM05D005262 ORTHO05D006590 1.0e-39 167.9 185 50.3
A09p40160 Brassica napus HOM05D005262 ORTHO05D006590 3.9e-39 166.0 185 49.7
BraA09t39514Z Brassica rapa HOM05D005262 ORTHO05D006590 3.9e-39 166.0 185 49.7
Gohir.D10G056500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 7.0e-36 155.2 154 59.1
BolC5t31158H Brassica oleracea HOM05D005262 ORTHO05D006590 3.5e-35 152.9 148 56.1
RcHm_v2.0_Chr7g0220341 Rosa chinensis HOM05D005262 ORTHO05D006590 1.7e-34 150.6 86 87.2
Eucgr.L00661 Eucalyptus grandis HOM05D005262 ORTHO05D006590 5.0e-34 149.1 106 71.7
ClCG08G001930 Citrullus lanatus HOM05D005262 ORTHO05D006590 4.2e-33 146.0 114 66.7
BcaC05g26391 Brassica carinata HOM05D005262 ORTHO05D006590 9.4e-33 144.8 176 47.7
RcHm_v2.0_Chr7g0220351 Rosa chinensis HOM05D005262 ORTHO05D006590 8.8e-23 111.7 72 77.8
Oeu021067.1 Olea europaea HOM05D005262 ORTHO05D006590 1.4e-20 104.4 78 64.1
Haze_01349 Corylus avellana HOM05D005262 ORTHO05D006590 5.4e-20 102.4 83 65.1
Glyma.11G251200 Glycine max HOM05D005262 ORTHO05D006590 7.0e-20 102.1 79 65.8
Lj3C1034G10 Lonicera japonica HOM05D006399 ORTHO05D007988 1.6e-19 100.9 82 64.6
FAN15G0396 Fragaria x ananassa HOM05D005262 ORTHO05D006590 3.8e-18 96.3 66 77.3
SEGI_29332 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 8.6e-18 95.1 91 52.7
Pp3c14_7320 Physcomitrium patens HOM05D005262 ORTHO05D006590 1.1e-17 94.7 155 39.4
AagrBONN_evm.TU.Sc2ySwM_228.1458 Anthoceros agrestis HOM05D005262 ORTHO05D006590 4.0e-15 86.3 163 37.4
SEGI_36558 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 6.8e-15 85.5 80 53.8
CBR_g30169 Chara braunii HOM05D005262 ORTHO05D006590 1.2e-14 84.7 159 32.1
SEGI_23137 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.2e-14 84.7 85 52.9
SEGI_39727 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 3.4e-14 83.2 80 52.5
Mapoly0001s0053 Marchantia polymorpha HOM05D005262 ORTHO05D006590 1.4e-12 77.8 119 36.1
SHI20784 Sapria himalayana HOM05D005262 ORTHO05D006590 2.4e-12 77.0 76 56.6
Eucgr.L00657 Eucalyptus grandis HOM05D005262 ORTHO05D006590 5.4e-12 75.9 90 53.3


User provided reference genes

Program Settings