Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 4.8e-94 347.8 174 100.0
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 4.8e-94 347.8 174 100.0
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.6e-92 342.0 174 98.3
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 5.8e-92 340.9 174 97.7
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.8e-88 329.3 188 89.9
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 9.3e-74 280.4 173 84.4
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 1.8e-72 276.2 172 83.7
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 1.8e-72 276.2 165 83.6
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 8.7e-64 247.3 171 73.1
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 8.7e-64 247.3 171 73.1
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 1.1e-63 246.9 172 73.8
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 1.3e-62 243.4 171 72.5
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 1.1e-61 240.4 171 73.1
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 1.8e-61 239.6 170 70.6
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 5.3e-61 238.0 169 71.6
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 3.4e-60 235.3 170 70.6
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 1.0e-59 233.8 170 68.8
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 1.3e-59 233.4 167 72.5
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 1.7e-59 233.0 167 71.9
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 2.2e-59 232.6 171 70.2
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 2.9e-59 232.3 168 70.2
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 6.5e-59 231.1 166 71.7
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.1e-58 230.3 168 70.2
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.4e-58 229.9 168 69.6
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 1.4e-58 229.9 167 71.3
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 1.9e-58 229.6 168 70.8
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 2.5e-58 229.2 166 71.1
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 2.5e-58 229.2 167 71.3
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 3.2e-58 228.8 161 71.4
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 4.2e-58 228.4 169 69.2
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 5.5e-58 228.0 161 70.8
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 5.5e-58 228.0 172 66.9
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 7.2e-58 227.6 168 68.5
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 7.2e-58 227.6 168 70.2
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 9.4e-58 227.3 173 67.6
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 1.2e-57 226.9 161 70.8
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 1.2e-57 226.9 165 67.3
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 1.2e-57 226.9 162 71.0
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 1.2e-57 226.9 168 67.9
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 1.6e-57 226.5 168 69.6
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 1.6e-57 226.5 168 67.9
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.6e-57 226.5 164 70.1
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 2.1e-57 226.1 161 70.8
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 2.7e-57 225.7 168 67.9
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 2.7e-57 225.7 168 67.9
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 2.7e-57 225.7 172 68.0
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 2.7e-57 225.7 161 70.2
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 3.6e-57 225.3 161 70.2
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 3.6e-57 225.3 161 70.2
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 4.7e-57 224.9 172 67.4
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 4.7e-57 224.9 168 68.5
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 4.7e-57 224.9 172 65.1
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 6.1e-57 224.6 163 70.6
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 7.9e-57 224.2 168 66.1
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 7.9e-57 224.2 167 67.7
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 1.0e-56 223.8 161 69.6
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 1.0e-56 223.8 161 69.6
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 1.0e-56 223.8 161 69.6
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.0e-56 223.8 168 66.1
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.4e-56 223.4 168 68.5
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.4e-56 223.4 168 68.5
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 2.3e-56 222.6 168 66.7
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 3.0e-56 222.2 160 70.6
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 3.0e-56 222.2 168 64.9
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 3.0e-56 222.2 165 67.9
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 5.1e-56 221.5 166 67.5
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 5.1e-56 221.5 165 67.9
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 5.1e-56 221.5 165 67.9
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 6.7e-56 221.1 168 67.3
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 6.7e-56 221.1 171 67.3
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 6.7e-56 221.1 167 67.7
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 6.7e-56 221.1 168 66.1
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 8.8e-56 220.7 171 65.5
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 1.1e-55 220.3 168 66.7
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 1.1e-55 220.3 168 67.3
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 1.1e-55 220.3 161 67.7
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 1.1e-55 220.3 168 66.1
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 1.5e-55 219.9 169 66.9
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 1.5e-55 219.9 172 66.3
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 1.5e-55 219.9 161 68.3
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.0e-55 219.5 165 66.7
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 2.6e-55 219.2 151 72.2
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 2.6e-55 219.2 167 67.1
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.6e-55 219.2 168 65.5
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 3.3e-55 218.8 168 64.9
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 4.4e-55 218.4 167 68.3
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 4.4e-55 218.4 168 64.9
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 4.4e-55 218.4 168 65.5
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 4.4e-55 218.4 165 67.3
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 5.7e-55 218.0 166 67.5
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 7.4e-55 217.6 167 67.7
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 7.4e-55 217.6 160 66.9
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 7.4e-55 217.6 160 66.9
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 7.4e-55 217.6 172 65.1
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 1.3e-54 216.9 172 66.9
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 1.3e-54 216.9 168 66.1
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 1.7e-54 216.5 166 65.7
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 1.7e-54 216.5 163 65.6
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 1.7e-54 216.5 172 64.0
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 2.8e-54 215.7 160 67.5
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 2.8e-54 215.7 170 64.7
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 3.7e-54 215.3 166 65.1
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 6.3e-54 214.5 160 69.4
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 6.3e-54 214.5 166 68.7
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 8.2e-54 214.2 165 65.5
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 8.2e-54 214.2 168 64.3
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 2.4e-53 212.6 166 67.5
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 4.1e-53 211.8 168 63.7
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 6.9e-53 211.1 160 66.2
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 9.1e-53 210.7 167 64.7
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 9.1e-53 210.7 165 66.1
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 1.5e-52 209.9 168 62.5
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 3.4e-52 208.8 168 61.9
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 4.5e-52 208.4 170 63.5
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 5.9e-52 208.0 160 64.4
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 7.7e-52 207.6 161 68.3
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 7.7e-52 207.6 171 61.4
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 1.0e-51 207.2 168 62.5
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 1.3e-51 206.8 172 62.2
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 6.5e-51 204.5 168 60.7
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 8.5e-51 204.1 167 62.9
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 5.5e-50 201.4 164 61.6
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 1.2e-49 200.3 161 62.7
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 1.4e-48 196.8 160 62.5
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 1.4e-48 196.8 167 58.7
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 3.0e-48 195.7 166 57.8
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 5.2e-48 194.9 168 55.4
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 6.7e-48 194.5 169 60.4
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 8.8e-48 194.1 166 57.8
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 1.1e-47 193.7 163 60.7
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 2.6e-47 192.6 169 59.2
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 4.4e-47 191.8 160 57.5
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 4.4e-47 191.8 159 61.0
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.3e-46 190.3 157 61.8
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 1.7e-46 189.9 160 57.5
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 2.8e-46 189.1 168 58.9
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 6.3e-46 188.0 168 58.3
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 6.3e-46 188.0 168 57.1
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 1.8e-45 186.4 168 57.1
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 3.1e-45 185.7 171 57.9
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 9.1e-45 184.1 169 59.2
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 4.5e-44 181.8 125 70.4
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 5.0e-43 178.3 165 58.8
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 8.5e-43 177.6 162 55.6
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 1.5e-42 176.8 125 70.4
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 1.9e-42 176.4 133 65.4
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 3.2e-42 175.6 163 55.8
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 7.2e-42 174.5 160 55.0
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 2.7e-41 172.6 127 68.5
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 6.1e-41 171.4 165 57.0
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 6.1e-41 171.4 133 63.9
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 6.1e-41 171.4 123 71.5
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 2.6e-39 166.0 124 66.9
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 1.1e-37 160.6 124 65.3
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 1.4e-37 160.2 154 50.0
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 4.1e-37 158.7 136 60.3
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 3.2e-34 149.1 105 70.5
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 8.0e-33 144.4 151 53.6
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 1.2e-31 140.6 162 52.5
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 2.2e-30 136.3 168 48.2
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 9.1e-29 131.0 144 47.2
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 6.5e-27 124.8 168 45.2
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 8.6e-27 124.4 168 45.2
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 1.1e-26 124.0 90 70.0
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.1e-26 124.0 116 57.8
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.9e-26 123.2 168 45.2
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 5.2e-24 115.2 71 74.6
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 8.9e-24 114.4 95 66.3
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 2.8e-22 109.4 171 42.1
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 2.3e-19 99.8 92 55.4
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 1.2e-17 94.0 93 50.5
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 9.8e-15 84.3 84 50.0
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 3.5e-12 75.9 49 75.5
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 3.0e-11 72.8 122 38.5
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 2.3e-08 63.2 178 28.1
CANSAT01G2972 Cannabis sativa HOM05D000003 ORTHO05D000004 5.2e-08 62.0 46 65.2
Gorai.002G159200 Gossypium raimondii HOM05D028424 ORTHO05D219023 9.8e-07 57.8 57 54.4
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 2.2e-06 56.6 69 43.5


User provided reference genes

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