Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G1372 Fragaria x ananassa HOM05D003943 ORTHO05D004753 2.4e-142 508.8 254 100.0
FAN28G2380 Fragaria x ananassa HOM05D003943 ORTHO05D004753 9.9e-141 503.4 254 99.2
FvH4_1g24730 Fragaria vesca HOM05D003943 ORTHO05D004753 1.2e-133 479.9 241 99.2
FvH4_1g24810 Fragaria vesca HOM05D003943 ORTHO05D004753 1.2e-133 479.9 241 99.2
FAN19G3070 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.2e-133 479.9 241 99.2
RcHm_v2.0_Chr2g0122251 Rosa chinensis HOM05D003943 ORTHO05D004753 7.6e-133 477.2 241 98.3
RcHm_v2.0_Chr4g0409741 Rosa chinensis HOM05D003943 ORTHO05D004753 7.6e-133 477.2 241 98.3
FAN23G0735 Fragaria x ananassa HOM05D003943 ORTHO05D004753 3.9e-129 464.9 235 99.1
FAN26G0481 Fragaria x ananassa HOM05D003943 ORTHO05D004753 3.9e-129 464.9 350 72.0
Prupe.4G241300 Prunus persica HOM05D003943 ORTHO05D004753 2.1e-127 459.1 241 94.2
GSVIVG01011153001 Vitis vinifera HOM05D003943 ORTHO05D004753 5.3e-126 454.5 240 93.8
Cfa010504 Carpinus fangiana HOM05D003943 ORTHO05D004753 2.6e-125 452.2 241 93.4
Haze_03432 Corylus avellana HOM05D003943 ORTHO05D004753 3.4e-125 451.8 241 93.4
Haze_20185 Corylus avellana HOM05D003943 ORTHO05D004753 3.4e-125 451.8 241 93.4
CANSAT64G2459 Cannabis sativa HOM05D003943 ORTHO05D004753 5.8e-125 451.1 241 92.1
CiPaw.10G017400 Carya illinoinensis HOM05D003943 ORTHO05D004753 5.8e-125 451.1 241 92.1
MD05G1235300 Malus domestica HOM05D003943 ORTHO05D004753 9.9e-125 450.3 241 92.1
QL07p036748 Quercus lobata HOM05D003943 ORTHO05D004753 9.9e-125 450.3 241 92.9
CiPaw.09G020900 Carya illinoinensis HOM05D003943 ORTHO05D004753 2.9e-124 448.7 240 92.1
Nn2g14305 Nelumbo nucifera HOM05D003943 ORTHO05D004753 6.4e-124 447.6 241 91.3
MD10G1211300 Malus domestica HOM05D003943 ORTHO05D004753 8.4e-124 447.2 241 91.7
MSTRG.10894 Avicennia marina HOM05D003943 ORTHO05D004753 1.9e-123 446.0 241 91.3
Dinv20358 Davidia involucrata HOM05D003943 ORTHO05D004753 3.2e-123 445.3 241 90.5
Oeu049654.1 Olea europaea HOM05D003943 ORTHO05D004753 3.2e-123 445.3 241 91.3
Ciclev10012509m.g Citrus clementina HOM05D003943 ORTHO05D004753 4.2e-123 444.9 241 91.3
Atru.chr8.1362 Acer truncatum HOM05D003943 ORTHO05D004753 5.5e-123 444.5 241 91.3
ClCG01G015010 Citrullus lanatus HOM05D003943 ORTHO05D004753 1.2e-122 443.4 241 90.5
unitig_32.g11085 Utricularia gibba HOM05D003943 ORTHO05D004753 1.2e-122 443.4 240 91.2
TWI77G0554 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 1.6e-122 443.0 241 90.0
Actinidia38793 Actinidia chinensis HOM05D003943 ORTHO05D004753 2.1e-122 442.6 241 90.9
MELO3C024586.2 Cucumis melo HOM05D003943 ORTHO05D004753 2.1e-122 442.6 241 90.5
Atru.chr12.911 Acer truncatum HOM05D003943 ORTHO05D004753 3.5e-122 441.8 241 90.9
Actinidia21868 Actinidia chinensis HOM05D003943 ORTHO05D004753 3.5e-122 441.8 241 90.9
Eucgr.K02620 Eucalyptus grandis HOM05D003943 ORTHO05D004753 3.5e-122 441.8 241 90.9
Manes.01G025400 Manihot esculenta HOM05D003943 ORTHO05D004753 3.5e-122 441.8 241 90.0
Oeu039454.1 Olea europaea HOM05D003943 ORTHO05D004753 3.5e-122 441.8 240 90.8
Sopen09g036280 Solanum pennellii HOM05D003943 ORTHO05D004753 3.5e-122 441.8 241 90.0
PGSC0003DMG400021625 Solanum tuberosum HOM05D003943 ORTHO05D004753 3.5e-122 441.8 241 90.0
TWI74G1172 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 4.6e-122 441.4 241 89.6
HanXRQChr17g0533251 Helianthus annuus HOM05D003943 ORTHO05D004753 6.0e-122 441.0 241 90.5
Manes.08G033500 Manihot esculenta HOM05D003943 ORTHO05D004753 7.9e-122 440.7 241 89.6
Sabra16G0070600 Salix brachista HOM05D003943 ORTHO05D004753 7.9e-122 440.7 241 90.5
Sabra16G0072800 Salix brachista HOM05D003943 ORTHO05D004753 7.9e-122 440.7 241 90.5
Sed0023950 Sechium edule HOM05D003943 ORTHO05D004753 7.9e-122 440.7 241 90.5
CDE10G1025 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 1.3e-121 439.9 241 89.6
HanXRQChr09g0277391 Helianthus annuus HOM05D003943 ORTHO05D004753 1.3e-121 439.9 241 90.0
Sed0024685 Sechium edule HOM05D003943 ORTHO05D004753 1.8e-121 439.5 241 90.0
CsaV3_6G041100 Cucumis sativus L. HOM05D003943 ORTHO05D004753 2.3e-121 439.1 241 90.0
Potri.016G070400 Populus trichocarpa HOM05D003943 ORTHO05D004753 2.3e-121 439.1 241 89.6
THA.LOC104809953 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 2.3e-121 439.1 241 90.0
TAR623G0676 Trochodendron aralioides HOM05D003943 ORTHO05D004753 2.3e-121 439.1 241 88.8
Lj6A21G25 Lonicera japonica HOM05D003943 ORTHO05D004753 3.0e-121 438.7 241 90.0
TAR633G0404 Trochodendron aralioides HOM05D003943 ORTHO05D004753 3.9e-121 438.3 241 89.2
THA.LOC104826802 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 5.1e-121 438.0 241 89.6
Lj6A3G40 Lonicera japonica HOM05D003943 ORTHO05D004753 1.1e-120 436.8 240 90.0
Migut.I01176 Erythranthe guttata HOM05D003943 ORTHO05D004753 1.5e-120 436.4 241 88.8
Potri.006G203400 Populus trichocarpa HOM05D003943 ORTHO05D004753 1.5e-120 436.4 241 89.6
PGR004G2105 Punica granatum HOM05D003943 ORTHO05D004753 1.9e-120 436.0 241 89.2
PGR142G4032 Punica granatum HOM05D003943 ORTHO05D004753 1.9e-120 436.0 241 89.2
Rhsim08G0248000 Rhododendron simsii HOM05D003943 ORTHO05D004753 1.9e-120 436.0 241 88.0
vmacro18760 Vaccinium macrocarpon HOM05D003943 ORTHO05D004753 1.9e-120 436.0 245 87.8
CSS0000599 Camellia sinensis var. sinensis HOM05D003943 ORTHO05D004753 3.3e-120 435.3 238 89.9
Hund10875 Selenicereus undatus HOM05D003943 ORTHO05D004753 5.6e-120 434.5 241 89.6
Lsat_1_v5_gn_4_88760 Lactuca sativa HOM05D003943 ORTHO05D004753 7.4e-120 434.1 241 89.2
Hma1.2p1_1104F.1_g257380 Hydrangea macrophylla HOM05D003943 ORTHO05D004753 1.3e-119 433.3 234 91.9
HPP92_002146 Vanilla planifolia HOM05D003943 ORTHO05D004753 1.3e-119 433.3 241 88.4
Lsat_1_v5_gn_6_32361 Lactuca sativa HOM05D003943 ORTHO05D004753 2.8e-119 432.2 240 89.2
Cpa.g.sc104.32 Carica papaya HOM05D003943 ORTHO05D004753 4.8e-119 431.4 241 88.0
SalBow6G5742 Salvia bowleyana HOM05D003943 ORTHO05D004753 4.8e-119 431.4 241 88.0
Duzib093G1950 Durio zibethinus HOM05D003943 ORTHO05D004753 6.2e-119 431.0 241 87.1
Glyma.02G196900 Glycine max HOM05D003943 ORTHO05D004753 6.2e-119 431.0 241 88.0
ATR0772G207 Amborella trichopoda HOM05D003943 ORTHO05D004753 8.1e-119 430.6 241 87.1
Gohir.D01G191300 Gossypium hirsutum HOM05D003943 ORTHO05D004753 8.1e-119 430.6 241 87.6
Gorai.002G235200 Gossypium raimondii HOM05D003943 ORTHO05D004753 8.1e-119 430.6 241 87.6
arahy.Tifrunner.gnm1.ann1.07MWYB Arachis hypogaea HOM05D003943 ORTHO05D004753 2.4e-118 429.1 241 86.7
arahy.Tifrunner.gnm1.ann1.T05T6P Arachis hypogaea HOM05D003943 ORTHO05D004753 2.4e-118 429.1 241 86.7
Glyma.10G081400 Glycine max HOM05D003943 ORTHO05D004753 2.4e-118 429.1 241 87.1
Glyma.10G002300 Glycine max HOM05D003943 ORTHO05D004753 3.1e-118 428.7 241 87.1
Phvul.010G103000 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 3.1e-118 428.7 241 87.6
Gohir.A09G134200 Gossypium hirsutum HOM05D003943 ORTHO05D004753 4.0e-118 428.3 241 86.7
Gorai.006G149400 Gossypium raimondii HOM05D003943 ORTHO05D004753 4.0e-118 428.3 241 86.7
VMungo0331G0074 Vigna mungo HOM05D003943 ORTHO05D004753 5.3e-118 427.9 241 87.1
VMungo0720G1310 Vigna mungo HOM05D003943 ORTHO05D004753 5.3e-118 427.9 241 87.1
Cc04_g00390 Coffea canephora HOM05D003943 ORTHO05D004753 6.9e-118 427.6 249 85.9
Lalb_Chr02g0144091 Lupinus albus HOM05D003943 ORTHO05D004753 6.9e-118 427.6 241 87.1
Gohir.A01G201400 Gossypium hirsutum HOM05D003943 ORTHO05D004753 9.0e-118 427.2 241 87.1
Thecc.05G104300 Theobroma cacao HOM05D003943 ORTHO05D004753 9.0e-118 427.2 241 87.1
COL.COLO4_29575 Corchorus olitorius HOM05D003943 ORTHO05D004753 1.5e-117 426.4 241 87.6
Phvul.007G268100 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 1.5e-117 426.4 241 87.1
Lalb_Chr11g0067891 Lupinus albus HOM05D003943 ORTHO05D004753 3.4e-117 425.2 241 86.7
Aa31sc52G210 Aethionema arabicum HOM05D003943 ORTHO05D004753 4.5e-117 424.9 241 86.7
AT5G06360 Arabidopsis thaliana HOM05D003943 ORTHO05D004753 4.5e-117 424.9 241 87.1
ECA233G4676 Erigeron canadensis HOM05D003943 ORTHO05D004753 5.8e-117 424.5 241 87.6
Aqoxy1G00659 Aquilegia oxysepala HOM05D003943 ORTHO05D004753 1.0e-116 423.7 241 85.9
Pp3c7_2280 Physcomitrium patens HOM05D003943 ORTHO05D004753 1.3e-116 423.3 241 84.6
Sabra06G0156600 Salix brachista HOM05D003943 ORTHO05D004753 1.3e-116 423.3 265 81.5
Lj1g0010263 Lotus japonicus HOM05D003943 ORTHO05D004753 2.9e-116 422.2 241 84.2
Peaxi162Scf00286g00330 Petunia axillaris HOM05D003943 ORTHO05D004753 2.9e-116 422.2 244 86.1
SMO367G0573 Selaginella moellendorffii HOM05D003943 ORTHO05D004753 2.9e-116 422.2 241 84.2
Sp6g36490 Schrenkiella parvula HOM05D003943 ORTHO05D004753 4.9e-116 421.4 241 85.9
SGA_v2.0_scaffold71G24009 Striga asiatica HOM05D003943 ORTHO05D004753 1.1e-115 420.2 241 87.1
CARHR207110 Cardamine hirsuta HOM05D003943 ORTHO05D004753 1.9e-115 419.5 241 84.6
Mapoly0020s0123 Marchantia polymorpha HOM05D003943 ORTHO05D004753 7.1e-115 417.5 241 83.0
PSO384G4082 Papaver somniferum HOM05D003943 ORTHO05D004753 7.1e-115 417.5 241 85.1
Thhalv10014439m.g Eutrema salsugineum HOM05D003943 ORTHO05D004753 9.3e-115 417.2 241 85.1
Ca_16636_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 1.2e-114 416.8 241 85.1
PSO339G3654 Papaver somniferum HOM05D003943 ORTHO05D004753 1.6e-114 416.4 241 84.6
AL6G16440 Arabidopsis lyrata HOM05D003943 ORTHO05D004753 2.1e-114 416.0 241 85.9
Psat6g114680 Pisum sativum HOM05D003943 ORTHO05D004753 2.7e-114 415.6 241 84.6
Carub.0006s0525 Capsella rubella HOM05D003943 ORTHO05D004753 3.5e-114 415.2 241 85.5
EL10Ac5g12966 Beta vulgaris HOM05D003943 ORTHO05D004753 4.6e-114 414.8 240 86.7
BcaB05g21673 Brassica carinata HOM05D003943 ORTHO05D004753 7.9e-114 414.1 241 84.6
C09p70420 Brassica napus HOM05D003943 ORTHO05D004753 2.3e-113 412.5 240 84.6
BolC9t59788H Brassica oleracea HOM05D003943 ORTHO05D004753 2.3e-113 412.5 240 84.6
Nitab4.5_0008073g0030 Nicotiana tabacum HOM05D003943 ORTHO05D004753 2.3e-113 412.5 241 85.1
C02p02670 Brassica napus HOM05D003943 ORTHO05D004753 3.9e-113 411.8 241 84.2
BolC2t06233H Brassica oleracea HOM05D003943 ORTHO05D004753 3.9e-113 411.8 241 84.2
Ca_11700_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 5.1e-113 411.4 241 84.6
AagrBONN_evm.TU.Sc2ySwM_369.90 Anthoceros agrestis HOM05D003943 ORTHO05D004753 6.7e-113 411.0 241 80.9
BcaC03g13169 Brassica carinata HOM05D003943 ORTHO05D004753 6.7e-113 411.0 241 83.8
BraA02t04878Z Brassica rapa HOM05D003943 ORTHO05D004753 1.9e-112 409.5 240 84.2
A10p30010 Brassica napus HOM05D003943 ORTHO05D004753 2.5e-112 409.1 239 84.5
BraA10t45041Z Brassica rapa HOM05D003943 ORTHO05D004753 2.5e-112 409.1 239 84.5
CBR_g12036 Chara braunii HOM05D003943 ORTHO05D004753 2.5e-112 409.1 241 81.3
AUR62030745 Chenopodium quinoa HOM05D003943 ORTHO05D004753 2.1e-111 406.0 241 83.8
AUR62036383 Chenopodium quinoa HOM05D003943 ORTHO05D004753 2.1e-111 406.0 241 83.8
Ah.12g059190 Amaranthus hybridus HOM05D003943 ORTHO05D004753 4.1e-110 401.7 241 82.6
TPR.G5876 Trifolium pratense HOM05D003943 ORTHO05D004753 4.1e-110 401.7 241 83.4
Medtr3g088865 Medicago truncatula HOM05D003943 ORTHO05D004753 4.5e-109 398.3 241 80.9
Lj2g0010046 Lotus japonicus HOM05D003943 ORTHO05D004753 7.6e-109 397.5 241 81.3
Medtr0508s0010 Medicago truncatula HOM05D003943 ORTHO05D004753 1.7e-108 396.4 241 81.7
Os07g0673100 Oryza sativa ssp. japonica HOM05D003943 ORTHO05D004753 2.9e-108 395.6 241 82.2
Sc14g0006610 Simmondsia chinensis HOM05D003943 ORTHO05D004753 5.0e-108 394.8 222 87.8
FAN23G1436 Fragaria x ananassa HOM05D003943 ORTHO05D004753 2.3e-105 386.0 190 99.5
TPR.G2813 Trifolium pratense HOM05D003943 ORTHO05D004753 3.3e-104 382.1 256 76.6
MCO03G138 Micromonas commoda HOM05D003943 ORTHO05D004753 7.4e-104 380.9 241 74.7
DCAR_017903 Daucus carota HOM05D003943 ORTHO05D004753 1.3e-103 380.2 249 77.5
DCAR_016668 Daucus carota HOM05D003943 ORTHO05D004753 2.2e-103 379.4 248 77.8
Cre12.g507300 Chlamydomonas reinhardtii HOM05D003943 ORTHO05D004753 9.0e-102 374.0 241 75.9
PGSC0003DMG400029099 Solanum tuberosum HOM05D003943 ORTHO05D004753 2.6e-101 372.5 241 78.8
PRCOL_00000915 Prasinoderma coloniale HOM05D003943 ORTHO05D004753 5.9e-101 371.3 241 76.8
Zm00001eb111290 Zea mays HOM05D003943 ORTHO05D004753 2.2e-100 369.4 241 76.8
Zm00001eb330440 Zea mays HOM05D003943 ORTHO05D004753 2.2e-100 369.4 241 76.8
Gohir.D09G130700 Gossypium hirsutum HOM05D003943 ORTHO05D004753 7.2e-99 364.4 241 77.6
Aa31LG3G5080 Aethionema arabicum HOM05D003943 ORTHO05D004753 2.1e-98 362.8 200 89.0
AagrBONN_evm.TU.Sc2ySwM_340.394 Anthoceros agrestis HOM05D003943 ORTHO05D004753 4.6e-98 361.7 246 73.6
Dinv37798 Davidia involucrata HOM05D003943 ORTHO05D004753 2.5e-96 355.9 193 89.1
Rhsim05G0206200 Rhododendron simsii HOM05D003943 ORTHO05D004753 9.7e-96 354.0 241 75.9
Nitab4.5_0003291g0080 Nicotiana tabacum HOM05D003943 ORTHO05D004753 8.2e-95 350.9 257 73.9
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 1.5e-93 346.7 291 67.0
unitig_748.g7832 Utricularia gibba HOM05D003943 ORTHO05D004753 2.9e-92 342.4 181 91.2
SEGI_04875 Sequoiadendron giganteum HOM05D003943 ORTHO05D004753 7.7e-85 317.8 175 85.7
Haze_27191 Corylus avellana HOM05D003943 ORTHO05D004753 4.1e-78 295.4 241 60.6
Peaxi162Scf01149g00220 Petunia axillaris HOM05D003943 ORTHO05D004753 4.5e-69 265.4 140 89.3
Cfa024104 Carpinus fangiana HOM05D003943 ORTHO05D123184 7.5e-64 248.1 214 60.3
CDE10G0110 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 1.6e-58 230.3 135 86.7
BcaNung06320 Brassica carinata HOM05D003943 ORTHO05D004753 6.8e-57 224.9 143 81.1
BcaC06g32370 Brassica carinata HOM05D003943 ORTHO05D004753 3.4e-56 222.6 142 80.3
TPR.G6300 Trifolium pratense HOM05D003943 ORTHO05D004753 5.4e-54 215.3 220 55.9
SHI12410 Sapria himalayana HOM05D003943 ORTHO05D004753 1.7e-47 193.7 98 90.8
CDE10G0220 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 3.5e-45 186.0 93 92.5
Lsat_1_v5_gn_8_162181 Lactuca sativa HOM05D003943 ORTHO05D004753 3.6e-42 176.0 140 67.1
RcHm_v2.0_Chr7g0216591 Rosa chinensis HOM05D003943 ORTHO05D004753 1.1e-41 174.5 108 80.6
RcHm_v2.0_Chr7g0216551 Rosa chinensis HOM05D003943 ORTHO05D004753 1.7e-39 167.2 251 47.8
Duzib106G1686 Durio zibethinus HOM05D003943 ORTHO05D004753 4.9e-39 165.6 103 78.6
EL10Ac3g06422 Beta vulgaris HOM05D003943 ORTHO05D004753 3.2e-38 162.9 135 64.4
HanXRQChr03g0072971 Helianthus annuus HOM05D003943 ORTHO05D004753 2.7e-37 159.8 92 84.8
BcaC01g01015 Brassica carinata HOM05D003943 ORTHO05D004753 9.5e-35 151.4 100 80.0
SHI12413 Sapria himalayana HOM05D003943 ORTHO05D004753 1.7e-28 130.6 81 80.2
Lsat_1_v5_gn_6_65181 Lactuca sativa HOM05D003943 ORTHO05D000236 1.1e-27 127.9 92 70.7
Actinidia21636 Actinidia chinensis HOM05D003943 ORTHO05D004753 1.3e-23 114.4 111 58.6
Lj9C540G13 Lonicera japonica HOM05D003943 ORTHO05D004753 3.2e-22 109.8 175 41.1
SHI12416 Sapria himalayana HOM05D001600 ORTHO05D001502 2.3e-20 103.6 64 81.2
RcHm_v2.0_Chr7g0216581 Rosa chinensis HOM05D003943 ORTHO05D004753 4.0e-17 92.8 81 64.2
SHI17182 Sapria himalayana HOM05D000004 ORTHO05D367797 2.1e-10 70.5 56 67.9
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 6.2e-10 68.9 59 61.0
SHI30650 Sapria himalayana HOM05D004596 ORTHO05D005853 6.9e-09 65.5 62 61.3
C03p87270 Brassica napus HOM05D000836 ORTHO05D000709 3.4e-08 63.2 44 75.0
SHI32256 Sapria himalayana HOM05D003943 ORTHO05D001502 9.9e-08 61.6 35 80.0
BcaC05g26689 Brassica carinata HOM05D003943 ORTHO05D004753 4.9e-07 59.3 38 71.1
C04p30500 Brassica napus HOM05D002284 ORTHO05D033292 1.1e-06 58.2 34 79.4
BolC4t24585H Brassica oleracea HOM05D002284 ORTHO05D033292 2.4e-06 57.0 34 79.4


User provided reference genes

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