Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G1263 Fragaria x ananassa HOM05D004861 ORTHO05D001964 6.2e-159 564.3 335 100.0
FvH4_1g11320 Fragaria vesca HOM05D004861 ORTHO05D001964 1.4e-121 440.3 335 86.0
FAN28G0434 Fragaria x ananassa HOM05D004861 ORTHO05D001964 6.5e-116 421.4 335 82.4
FAN26G1727 Fragaria x ananassa HOM05D004861 ORTHO05D001964 8.5e-116 421.0 337 83.4
RcHm_v2.0_Chr2g0098831 Rosa chinensis HOM05D004861 ORTHO05D001964 5.2e-105 385.2 335 76.7
Prupe.7G172500 Prunus persica HOM05D004861 ORTHO05D001964 7.0e-94 348.2 335 61.8
CiPaw.07G061400 Carya illinoinensis HOM05D004861 ORTHO05D001964 2.1e-90 336.7 334 58.1
QL06p051243 Quercus lobata HOM05D004861 ORTHO05D001964 8.0e-90 334.7 341 69.8
MD15G1241500 Malus domestica HOM05D004861 ORTHO05D001964 1.0e-89 334.3 335 59.1
Haze_03721 Corylus avellana HOM05D004861 ORTHO05D001964 4.0e-89 332.4 333 56.5
Cfa007008 Carpinus fangiana HOM05D004861 ORTHO05D001964 1.8e-86 323.6 333 55.9
MD02G1127300 Malus domestica HOM05D004861 ORTHO05D001964 1.8e-86 323.6 335 57.3
Thecc.01G013900 Theobroma cacao HOM05D004861 ORTHO05D001964 8.6e-84 314.7 333 54.7
Eucgr.J02473 Eucalyptus grandis HOM05D004861 ORTHO05D001964 1.5e-83 313.9 333 54.4
Atru.chr3.873 Acer truncatum HOM05D004861 ORTHO05D001964 6.2e-82 308.5 333 54.1
CANSAT01G1088 Cannabis sativa HOM05D004861 ORTHO05D001964 2.3e-81 306.6 333 55.6
Ciclev10026280m.g Citrus clementina HOM05D004861 ORTHO05D001964 6.8e-81 305.1 334 51.8
ClCG10G000560 Citrullus lanatus HOM05D004861 ORTHO05D001964 3.4e-80 302.8 333 55.0
Potri.005G110200 Populus trichocarpa HOM05D004861 ORTHO05D001964 1.7e-79 300.4 334 57.8
Manes.01G149100 Manihot esculenta HOM05D004861 ORTHO05D001964 4.9e-79 298.9 333 51.1
PGR102G1053 Punica granatum HOM05D004861 ORTHO05D001964 1.4e-78 297.4 334 62.3
COL.COLO4_22468 Corchorus olitorius HOM05D004861 ORTHO05D001964 2.4e-78 296.6 340 52.4
Duzib147G1106 Durio zibethinus HOM05D004861 ORTHO05D001964 2.4e-78 296.6 333 52.0
Gorai.007G192100 Gossypium raimondii HOM05D004861 ORTHO05D001964 4.1e-78 295.8 333 52.3
Duzib264G0687 Durio zibethinus HOM05D004861 ORTHO05D001964 5.4e-78 295.4 333 52.6
Cc07_g11120 Coffea canephora HOM05D004861 ORTHO05D001964 9.2e-78 294.7 333 55.9
MELO3C013752.2 Cucumis melo HOM05D004861 ORTHO05D001964 9.2e-78 294.7 333 53.8
Gohir.A02G172700 Gossypium hirsutum HOM05D004861 ORTHO05D001964 2.0e-77 293.5 333 52.0
CsaV3_3G000640 Cucumis sativus L. HOM05D004861 ORTHO05D001964 2.7e-77 293.1 333 53.8
Dinv40122 Davidia involucrata HOM05D004861 ORTHO05D001964 2.7e-77 293.1 344 50.9
Gohir.A11G173200 Gossypium hirsutum HOM05D004861 ORTHO05D001964 2.7e-77 293.1 333 52.3
Gohir.D03G007200 Gossypium hirsutum HOM05D004861 ORTHO05D001964 2.7e-77 293.1 333 51.7
Sabra05G0090400 Salix brachista HOM05D004861 ORTHO05D001964 1.3e-76 290.8 334 56.0
Cpa.g.sc6.293 Carica papaya HOM05D004861 ORTHO05D001964 3.0e-76 289.7 333 49.8
CSS0021454 Camellia sinensis var. sinensis HOM05D004861 ORTHO05D001964 1.5e-75 287.3 345 52.2
Gorai.003G007500 Gossypium raimondii HOM05D004861 ORTHO05D001964 1.9e-75 287.0 333 51.1
Lj4g0003896 Lotus japonicus HOM05D004861 ORTHO05D001964 5.6e-75 285.4 336 50.9
Hund14064 Selenicereus undatus HOM05D004861 ORTHO05D001964 5.6e-75 285.4 349 51.0
TWI09G1074 Tripterygium wilfordii HOM05D004861 ORTHO05D001964 1.2e-74 284.3 335 50.1
Lj4A223T35 Lonicera japonica HOM05D004861 ORTHO05D001964 1.6e-74 283.9 345 50.4
EL10Ac6g15516 Beta vulgaris HOM05D004861 ORTHO05D001964 6.8e-73 278.5 345 49.9
AUR62003332 Chenopodium quinoa HOM05D004861 ORTHO05D001964 1.5e-72 277.3 346 51.2
Actinidia28721 Actinidia chinensis HOM05D004861 ORTHO05D001964 7.5e-72 275.0 342 48.2
TWI53G0158 Tripterygium wilfordii HOM05D004861 ORTHO05D001964 9.9e-72 274.6 333 48.9
Phvul.003G265700 Phaseolus vulgaris HOM05D004861 ORTHO05D001964 1.7e-71 273.9 345 51.3
AUR62029512 Chenopodium quinoa HOM05D004861 ORTHO05D001964 2.2e-71 273.5 346 51.2
Hma1.2p1_0315F.1_g122370 Hydrangea macrophylla HOM05D004861 ORTHO05D001964 2.2e-71 273.5 347 48.4
CAN.G354.49 Capsicum annuum HOM05D004861 ORTHO05D001964 2.9e-71 273.1 344 48.3
arahy.Tifrunner.gnm1.ann1.HCQ68S Arachis hypogaea HOM05D004861 ORTHO05D001964 4.9e-71 272.3 352 49.1
arahy.Tifrunner.gnm1.ann1.67ZU0R Arachis hypogaea HOM05D004861 ORTHO05D001964 6.4e-71 271.9 353 49.3
VMungo0251G3709 Vigna mungo HOM05D004861 ORTHO05D001964 8.3e-71 271.6 343 51.0
THA.LOC104819741 Tarenaya hassleriana HOM05D004861 ORTHO05D001964 1.1e-70 271.2 333 54.1
Ca_03631_v3 Cicer arietinum L. HOM05D004861 ORTHO05D001964 3.2e-70 269.6 340 48.8
Lalb_Chr09g0334231 Lupinus albus HOM05D004861 ORTHO05D001964 5.4e-70 268.9 351 47.6
Nitab4.5_0001685g0060 Nicotiana tabacum HOM05D004861 ORTHO05D001964 8.6e-68 261.5 344 47.4
Nitab4.5_0007831g0010 Nicotiana tabacum HOM05D004861 ORTHO05D001964 2.5e-67 260.0 344 46.2
Peaxi162Scf00635g00084 Petunia axillaris HOM05D004861 ORTHO05D001964 2.5e-67 260.0 343 45.2
PGSC0003DMG400022527 Solanum tuberosum HOM05D004861 ORTHO05D001964 3.3e-67 259.6 344 47.1
Solyc03g033390.3 Solanum lycopersicum HOM05D004861 ORTHO05D001964 4.7e-66 255.8 344 46.2
MSTRG.2733 Avicennia marina HOM05D004861 ORTHO05D001964 1.1e-65 254.6 344 45.1
Medtr8g075190 Medicago truncatula HOM05D004861 ORTHO05D001964 1.1e-65 254.6 343 47.8
Hma1.2p1_0869F.1_g230670 Hydrangea macrophylla HOM05D004861 ORTHO05D001964 2.4e-65 253.4 351 46.4
Rhsim08G0031700 Rhododendron simsii HOM05D004861 ORTHO05D001964 2.4e-65 253.4 347 46.4
Sopen03g006160 Solanum pennellii HOM05D004861 ORTHO05D001964 3.1e-65 253.1 344 45.9
Sc03g0003720 Simmondsia chinensis HOM05D004861 ORTHO05D001964 4.0e-65 252.7 345 47.2
vmacro18429 Vaccinium macrocarpon HOM05D004861 ORTHO05D001964 4.0e-65 252.7 346 46.8
SGA_v2.0_scaffold2G00975 Striga asiatica HOM05D004861 ORTHO05D001964 1.5e-64 250.8 345 45.8
SalBow3G1445 Salvia bowleyana HOM05D004861 ORTHO05D001964 2.0e-64 250.4 333 47.4
SalBow3G4058 Salvia bowleyana HOM05D004861 ORTHO05D001964 2.0e-64 250.4 333 47.4
Dinv33667 Davidia involucrata HOM05D004861 ORTHO05D001964 3.4e-64 249.6 340 46.2
MBI05_g33209_MAGBIO Magnolia biondii HOM05D004861 ORTHO05D001964 5.8e-64 248.8 345 45.5
TAR376G0516 Trochodendron aralioides HOM05D004861 ORTHO05D001964 5.8e-64 248.8 342 46.8
TPR.G19498 Trifolium pratense HOM05D004861 ORTHO05D001964 1.3e-63 247.7 343 46.4
Nitab4.5_0004653g0010 Nicotiana tabacum HOM05D004861 ORTHO05D001964 3.8e-63 246.1 345 44.1
PGSC0003DMG400003650 Solanum tuberosum HOM05D004861 ORTHO05D001964 3.8e-63 246.1 344 44.8
Nitab4.5_0001789g0090 Nicotiana tabacum HOM05D004861 ORTHO05D001964 8.4e-63 245.0 344 43.9
unitig_736.g22723 Utricularia gibba HOM05D004861 ORTHO05D001964 1.6e-61 240.7 347 45.8
Migut.H02183 Erythranthe guttata HOM05D004861 ORTHO05D001964 2.1e-61 240.4 344 46.2
Glyma.16G123900 Glycine max HOM05D004861 ORTHO05D001964 2.1e-61 240.4 350 46.6
Actinidia27235 Actinidia chinensis HOM05D004861 ORTHO05D001964 3.5e-61 239.6 342 43.9
Glyma.02G045900 Glycine max HOM05D004861 ORTHO05D001964 4.6e-61 239.2 356 47.2
CAN.G2331.2 Capsicum annuum HOM05D004861 ORTHO05D001964 7.8e-61 238.4 345 44.6
TAR628G0932 Trochodendron aralioides HOM05D004861 ORTHO05D001964 7.8e-61 238.4 331 46.2
Ah.03g149180 Amaranthus hybridus HOM05D004861 ORTHO05D001964 2.3e-60 236.9 345 45.8
Sed0009244 Sechium edule HOM05D004861 ORTHO05D001964 2.3e-60 236.9 325 46.8
GSVIVG01006513001 Vitis vinifera HOM05D004861 ORTHO05D001964 2.3e-60 236.9 192 65.6
Sed0012496 Sechium edule HOM05D004861 ORTHO05D001964 3.0e-60 236.5 337 47.8
Lsat_1_v5_gn_2_75700 Lactuca sativa HOM05D004861 ORTHO05D001964 3.3e-59 233.0 346 45.4
Carub.0007s0429 Capsella rubella HOM05D004861 ORTHO05D001964 1.1e-57 228.0 337 48.4
AL7G15110 Arabidopsis lyrata HOM05D004861 ORTHO05D001964 1.8e-57 227.3 337 51.3
AT4G35930 Arabidopsis thaliana HOM05D004861 ORTHO05D001964 1.5e-56 224.2 353 48.4
Sc16g0001960 Simmondsia chinensis HOM05D004861 ORTHO05D001964 1.5e-56 224.2 344 43.9
BcaNung05052 Brassica carinata HOM05D004861 ORTHO05D001964 3.4e-56 223.0 374 42.5
Peaxi162Scf00328g00051 Petunia axillaris HOM05D004861 ORTHO05D001964 3.4e-56 223.0 347 42.7
Aa31LG6G12880 Aethionema arabicum HOM05D004861 ORTHO05D001964 5.8e-56 222.2 337 47.2
PSO170G2109 Papaver somniferum HOM05D004861 ORTHO05D001964 5.8e-56 222.2 340 43.8
DCAR_010139 Daucus carota HOM05D004861 ORTHO05D001964 9.9e-56 221.5 347 42.9
C07p61440 Brassica napus HOM05D004861 ORTHO05D001964 1.3e-55 221.1 343 49.9
Sp7g33710 Schrenkiella parvula HOM05D004861 ORTHO05D001964 2.2e-55 220.3 337 43.6
HanXRQChr14g0441771 Helianthus annuus HOM05D004861 ORTHO05D001964 2.9e-55 219.9 342 43.0
Nn5g30794 Nelumbo nucifera HOM05D004861 ORTHO05D001964 2.9e-55 219.9 344 43.3
BraA03t15465Z Brassica rapa HOM05D004861 ORTHO05D001964 3.8e-55 219.5 343 49.6
DCAR_014039 Daucus carota HOM05D004861 ORTHO05D001964 1.1e-54 218.0 347 43.5
Thhalv10025800m.g Eutrema salsugineum HOM05D004861 ORTHO05D001964 1.4e-54 217.6 340 49.1
BolC7t46569H Brassica oleracea HOM05D004861 ORTHO05D001964 3.2e-54 216.5 343 43.7
CARHR244330 Cardamine hirsuta HOM05D004861 ORTHO05D001964 3.2e-54 216.5 344 46.8
HanXRQChr13g0414571 Helianthus annuus HOM05D004861 ORTHO05D001964 2.1e-53 213.8 348 42.8
Aqoxy5G01828 Aquilegia oxysepala HOM05D004861 ORTHO05D001964 7.8e-53 211.8 343 43.7
Atru.chr3.870 Acer truncatum HOM05D004861 ORTHO05D001964 1.1e-49 201.4 122 78.7
HanXRQChr15g0487221 Helianthus annuus HOM05D004861 ORTHO05D001964 3.1e-49 199.9 347 42.1
Hma1.2p1_2620F.1_g325560 Hydrangea macrophylla HOM05D004861 ORTHO05D001964 4.5e-48 196.1 188 57.4
Psat4g101760 Pisum sativum HOM05D004861 ORTHO05D001964 4.9e-47 192.6 343 42.0
Cc00_g15560 Coffea canephora HOM05D004861 ORTHO05D001964 6.4e-47 192.2 108 82.4
A03p63980 Brassica napus HOM05D004861 ORTHO05D001964 1.2e-45 188.0 338 47.0
ECA232G4489 Erigeron canadensis HOM05D004861 ORTHO05D001964 3.0e-44 183.3 186 57.5
ECA238G3415 Erigeron canadensis HOM05D004861 ORTHO05D001964 2.6e-40 170.2 187 53.5
Prupe.6G141800 Prunus persica HOM05D004861 ORTHO05D001964 5.8e-40 169.1 90 91.1
HPP92_020724 Vanilla planifolia HOM05D004861 ORTHO05D001964 1.4e-38 164.5 320 37.5
Oeu041083.1 Olea europaea HOM05D004861 ORTHO05D001964 1.8e-36 157.5 104 71.2
Os10g0438500 Oryza sativa ssp. japonica HOM05D004861 ORTHO05D001964 1.1e-35 154.8 330 36.7
Gohir.D11G180200 Gossypium hirsutum HOM05D004861 ORTHO05D001964 3.7e-34 149.8 273 40.3
Zm00001eb222730 Zea mays HOM05D004861 ORTHO05D001964 6.2e-34 149.1 333 36.6
CDE02G1334 Ceratophyllum demersum HOM05D004861 ORTHO05D001964 1.8e-33 147.5 332 36.1
SEGI_23955 Sequoiadendron giganteum HOM05D004861 ORTHO05D001964 9.0e-33 145.2 335 34.3
CDE05G1953 Ceratophyllum demersum HOM05D004861 ORTHO05D001964 2.0e-32 144.1 344 32.3
Zm00001eb047460 Zea mays HOM05D004861 ORTHO05D001964 9.3e-30 135.2 340 35.3
HanXRQChr04g0112761 Helianthus annuus HOM05D004861 ORTHO05D001964 5.1e-28 129.4 101 62.4
ECA234G4600 Erigeron canadensis HOM05D004861 ORTHO05D001964 8.7e-28 128.6 86 72.1
AagrBONN_evm.TU.Sc2ySwM_368.3169 Anthoceros agrestis HOM05D004861 ORTHO05D001964 1.9e-22 110.9 186 40.3
SMO339G0067 Selaginella moellendorffii HOM05D004861 ORTHO05D001964 5.1e-20 102.8 125 46.4
Pp3c9_8080 Physcomitrium patens HOM05D004861 ORTHO05D001964 3.4e-16 90.1 127 42.5
Pp3c24_3500 Physcomitrium patens HOM05D004861 ORTHO05D001964 6.5e-15 85.9 182 36.3
CBR_g66688 Chara braunii HOM05D004861 ORTHO05D001964 8.5e-15 85.5 135 42.2
Pp3c20_19230 Physcomitrium patens HOM05D004861 ORTHO05D001964 6.1e-13 79.3 182 34.6
MBI08_g29203_MAGBIO Magnolia biondii HOM05D000900 ORTHO05D001964 1.0e-12 78.6 58 63.8
Pp3c23_12690 Physcomitrium patens HOM05D004861 ORTHO05D001964 1.8e-12 77.8 179 35.8
CAN.G126.19 Capsicum annuum HOM05D004861 ORTHO05D001964 1.5e-11 74.7 214 31.3
Dinv08570 Davidia involucrata HOM05D004861 ORTHO05D001964 1.3e-10 71.6 169 33.1
SMO367G0386 Selaginella moellendorffii HOM05D004861 ORTHO05D001964 1.3e-10 71.6 125 36.0
AL1G51100 Arabidopsis lyrata HOM05D004861 ORTHO05D001964 2.8e-10 70.5 66 51.5
VMungo1215G1794 Vigna mungo HOM05D004861 ORTHO05D001964 3.1e-09 67.0 299 27.8
MBI08_g41172_MAGBIO Magnolia biondii HOM05D004861 ORTHO05D001964 1.2e-08 65.1 232 29.3


User provided reference genes

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