Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G1239 Fragaria x ananassa HOM05D001372 ORTHO05D007311 2.3e-50 201.8 93 100.0
FAN26G1996 Fragaria x ananassa HOM05D001372 ORTHO05D007311 3.3e-49 198.0 93 96.8
FAN28G0897 Fragaria x ananassa HOM05D001372 ORTHO05D007311 2.8e-48 194.9 93 94.6
RcHm_v2.0_Chr6g0260171 Rosa chinensis HOM05D001372 ORTHO05D007311 1.3e-42 176.0 82 95.1
RcHm_v2.0_Chr6g0260511 Rosa chinensis HOM05D001372 ORTHO05D007311 1.3e-42 176.0 82 95.1
FAN28G0653 Fragaria x ananassa HOM05D001372 ORTHO05D007311 8.6e-42 173.3 82 93.9
RcHm_v2.0_Chr6g0260501 Rosa chinensis HOM05D001372 ORTHO05D007311 8.6e-42 173.3 82 93.9
Prupe.8G112600 Prunus persica HOM05D001372 ORTHO05D007311 1.5e-38 162.5 82 86.6
RcHm_v2.0_Chr6g0260771 Rosa chinensis HOM05D001372 ORTHO05D007311 2.0e-38 162.2 82 90.2
MD10G1086600 Malus domestica HOM05D001372 ORTHO05D007311 2.6e-38 161.8 82 85.4
arahy.Tifrunner.gnm1.ann1.34YEZP Arachis hypogaea HOM05D001372 ORTHO05D007311 1.7e-34 149.1 83 79.5
Ciclev10030268m.g Citrus clementina HOM05D001372 ORTHO05D007311 1.7e-34 149.1 82 75.6
Atru.chr13.1402 Acer truncatum HOM05D001372 ORTHO05D007311 2.3e-34 148.7 82 76.8
Ca_20817_v3 Cicer arietinum L. HOM05D001372 ORTHO05D007311 2.3e-34 148.7 86 74.4
Glyma.11G123600 Glycine max HOM05D001372 ORTHO05D007311 2.3e-34 148.7 86 75.6
Lalb_Chr01g0002991 Lupinus albus HOM05D001372 ORTHO05D007311 2.3e-34 148.7 82 80.5
arahy.Tifrunner.gnm1.ann1.FTA1AJ Arachis hypogaea HOM05D001372 ORTHO05D007311 3.0e-34 148.3 81 80.2
TPR.G10235 Trifolium pratense HOM05D001372 ORTHO05D007311 3.9e-34 147.9 83 78.3
Ah.02g112890 Amaranthus hybridus HOM05D001372 ORTHO05D007311 5.0e-34 147.5 82 75.6
Ah.02g112920 Amaranthus hybridus HOM05D001372 ORTHO05D007311 5.0e-34 147.5 82 75.6
CsaV3_7G010120 Cucumis sativus L. HOM05D001372 ORTHO05D007311 6.6e-34 147.1 85 77.6
Solyc01g109070.2 Solanum lycopersicum HOM05D001372 ORTHO05D007311 8.6e-34 146.7 83 78.3
Sopen01g051270 Solanum pennellii HOM05D001372 ORTHO05D007311 8.6e-34 146.7 83 78.3
Nn2g15585 Nelumbo nucifera HOM05D001372 ORTHO05D007311 1.1e-33 146.4 85 75.3
EL10Ac5g10871 Beta vulgaris HOM05D001372 ORTHO05D007311 1.5e-33 146.0 80 76.2
Gorai.008G044200 Gossypium raimondii HOM05D001372 ORTHO05D007311 1.5e-33 146.0 82 74.4
Hma1.2p1_1353F.1_g277710 Hydrangea macrophylla HOM05D001372 ORTHO05D007311 1.5e-33 146.0 85 76.5
Eucgr.F03329 Eucalyptus grandis HOM05D001372 ORTHO05D007311 1.9e-33 145.6 82 75.6
HanXRQChr03g0074331 Helianthus annuus HOM05D001372 ORTHO05D007311 2.5e-33 145.2 82 73.2
Duzib052G0457 Durio zibethinus HOM05D001372 ORTHO05D007311 3.3e-33 144.8 82 74.4
Gohir.D12G042200 Gossypium hirsutum HOM05D001372 ORTHO05D007311 3.3e-33 144.8 82 73.2
Lj3g0024398 Lotus japonicus HOM05D001372 ORTHO05D007311 3.3e-33 144.8 86 74.4
Manes.15G145700 Manihot esculenta HOM05D001372 ORTHO05D007311 3.3e-33 144.8 86 76.7
Ah.11g045560 Amaranthus hybridus HOM05D001372 ORTHO05D007311 4.3e-33 144.4 82 74.4
MELO3C018416.2 Cucumis melo HOM05D001372 ORTHO05D007311 4.3e-33 144.4 85 75.3
Migut.N01213 Erythranthe guttata HOM05D001372 ORTHO05D007311 4.3e-33 144.4 82 75.6
COL.COLO4_17775 Corchorus olitorius HOM05D001372 ORTHO05D007311 5.6e-33 144.1 82 73.2
Thecc.02G028600 Theobroma cacao HOM05D001372 ORTHO05D007311 5.6e-33 144.1 82 74.4
Lsat_1_v5_gn_9_109081 Lactuca sativa HOM05D001372 ORTHO05D007311 7.3e-33 143.7 82 73.2
ClCG02G005510 Citrullus lanatus HOM05D001372 ORTHO05D007311 9.5e-33 143.3 86 74.4
Duzib132G0052 Durio zibethinus HOM05D001372 ORTHO05D007311 9.5e-33 143.3 82 74.4
Medtr4g068370 Medicago truncatula HOM05D001372 ORTHO05D007311 9.5e-33 143.3 82 76.8
Dinv28822 Davidia involucrata HOM05D001372 ORTHO05D007311 1.2e-32 142.9 85 75.3
Glyma.12G048200 Glycine max HOM05D001372 ORTHO05D007311 1.2e-32 142.9 86 73.3
Peaxi162Scf00016g00132 Petunia axillaris HOM05D001372 ORTHO05D007311 1.2e-32 142.9 82 76.8
Phvul.011G050400 Phaseolus vulgaris HOM05D001372 ORTHO05D007311 1.2e-32 142.9 86 73.3
CAN.G134.164 Capsicum annuum HOM05D001372 ORTHO05D007311 1.6e-32 142.5 82 74.4
AUR62021787 Chenopodium quinoa HOM05D001372 ORTHO05D007311 1.6e-32 142.5 82 73.2
Gohir.A09G221800 Gossypium hirsutum HOM05D001372 ORTHO05D007311 1.6e-32 142.5 82 73.2
Psat1g039160 Pisum sativum HOM05D001372 ORTHO05D007311 1.6e-32 142.5 86 72.1
ATR0807G173 Amborella trichopoda HOM05D001372 ORTHO05D007311 2.1e-32 142.1 82 72.0
Cpa.g.sc62.81 Carica papaya HOM05D001372 ORTHO05D007311 2.1e-32 142.1 82 79.3
AUR62008308 Chenopodium quinoa HOM05D001372 ORTHO05D007311 2.1e-32 142.1 82 72.0
AUR62008309 Chenopodium quinoa HOM05D001372 ORTHO05D007311 2.1e-32 142.1 82 72.0
Gohir.A12G030200 Gossypium hirsutum HOM05D001372 ORTHO05D007311 2.1e-32 142.1 82 72.0
TWI38G1937 Tripterygium wilfordii HOM05D001372 ORTHO05D007311 2.1e-32 142.1 82 72.0
vmacro02159 Vaccinium macrocarpon HOM05D001193 ORTHO05D007311 2.1e-32 142.1 87 71.3
CDE07G0396 Ceratophyllum demersum HOM05D001372 ORTHO05D007311 2.8e-32 141.7 84 72.6
COL.COLO4_17203 Corchorus olitorius HOM05D001372 ORTHO05D007311 2.8e-32 141.7 82 72.0
AUR62025645 Chenopodium quinoa HOM05D001372 ORTHO05D007311 3.6e-32 141.4 82 72.0
Sed0000118 Sechium edule HOM05D001372 ORTHO05D007311 3.6e-32 141.4 85 74.1
BcaC01g03046 Brassica carinata HOM05D001372 ORTHO05D007311 4.7e-32 141.0 83 71.1
Manes.17G096600 Manihot esculenta HOM05D001372 ORTHO05D007311 4.7e-32 141.0 86 74.4
Medtr0311s0010 Medicago truncatula HOM05D001372 ORTHO05D007311 4.7e-32 141.0 82 74.4
Oeu010568.1 Olea europaea HOM05D001372 ORTHO05D007311 4.7e-32 141.0 82 72.0
Rhsim11G0170800 Rhododendron simsii HOM05D001193 ORTHO05D007311 4.7e-32 141.0 80 77.5
TWI38G0580 Tripterygium wilfordii HOM05D001372 ORTHO05D007311 4.7e-32 141.0 82 72.0
CANSAT80G1477 Cannabis sativa HOM05D001372 ORTHO05D007311 6.2e-32 140.6 84 72.6
CAN.G322.87 Capsicum annuum HOM05D001372 ORTHO05D007311 6.2e-32 140.6 83 77.1
DCAR_022076 Daucus carota HOM05D001372 ORTHO05D007311 8.1e-32 140.2 83 74.7
Potri.009G109100 Populus trichocarpa HOM05D001372 ORTHO05D007311 8.1e-32 140.2 85 74.1
CDE09G1189 Ceratophyllum demersum HOM05D001455 ORTHO05D001587 1.1e-31 139.8 84 72.6
Hma1.2p1_0584F.1_g183260 Hydrangea macrophylla HOM05D001372 ORTHO05D007311 1.1e-31 139.8 82 74.4
SalBow3G1216 Salvia bowleyana HOM05D001372 ORTHO05D007311 1.1e-31 139.8 82 74.4
SalBow5G1173 Salvia bowleyana HOM05D001372 ORTHO05D007311 1.1e-31 139.8 82 74.4
CiPaw.05G058700 Carya illinoinensis HOM05D001372 ORTHO05D007311 1.8e-31 139.0 85 71.8
PGR042G3549 Punica granatum HOM05D001372 ORTHO05D007311 3.1e-31 138.3 83 72.3
Atru.chr5.2877 Acer truncatum HOM05D001372 ORTHO05D007311 4.0e-31 137.9 81 72.8
C03p56710 Brassica napus HOM05D001372 ORTHO05D002010 4.0e-31 137.9 79 73.4
BolC3t17955H Brassica oleracea HOM05D001372 ORTHO05D002010 4.0e-31 137.9 79 73.4
Cfa004947 Carpinus fangiana HOM05D001372 ORTHO05D007311 4.0e-31 137.9 85 70.6
CSS0001418 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 5.2e-31 137.5 76 80.3
CSS0020019 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 5.2e-31 137.5 76 80.3
Cc02_g18240 Coffea canephora HOM05D001372 ORTHO05D007311 5.2e-31 137.5 83 71.1
THA.LOC104807341 Tarenaya hassleriana HOM05D001372 ORTHO05D007311 5.2e-31 137.5 82 73.2
unitig_60.g25449 Utricularia gibba HOM05D001372 ORTHO05D007311 5.2e-31 137.5 76 77.6
BraA03t13697Z Brassica rapa HOM05D001372 ORTHO05D002010 6.8e-31 137.1 79 73.4
Nitab4.5_0008194g0080 Nicotiana tabacum HOM05D001372 ORTHO05D007311 6.8e-31 137.1 77 81.8
BcaB03g16342 Brassica carinata HOM05D001372 ORTHO05D007311 8.9e-31 136.7 82 72.0
Haze_02464 Corylus avellana HOM05D001372 ORTHO05D007311 8.9e-31 136.7 85 70.6
Sabra09G0083300 Salix brachista HOM05D001372 ORTHO05D007311 8.9e-31 136.7 85 71.8
Sp3g29230 Schrenkiella parvula HOM05D001372 ORTHO05D007311 8.9e-31 136.7 83 73.5
Eucgr.G00508 Eucalyptus grandis HOM05D001372 ORTHO05D007311 1.2e-30 136.3 82 69.5
BcaB08g34618 Brassica carinata HOM05D001372 ORTHO05D007311 1.5e-30 136.0 82 70.7
Eucgr.G01534 Eucalyptus grandis HOM05D001372 ORTHO05D007311 1.5e-30 136.0 82 69.5
Oeu003708.1 Olea europaea HOM05D001372 ORTHO05D007311 1.5e-30 136.0 79 72.2
A07p04870 Brassica napus HOM05D001372 ORTHO05D007311 2.0e-30 135.6 82 70.7
Haze_02462 Corylus avellana HOM05D001372 ORTHO05D007311 2.0e-30 135.6 82 72.0
Carub.0003s2981 Capsella rubella HOM05D001372 ORTHO05D007311 2.6e-30 135.2 83 71.1
CARHR106260 Cardamine hirsuta HOM05D001372 ORTHO05D007311 2.6e-30 135.2 82 72.0
A03p45650 Brassica napus HOM05D001372 ORTHO05D002010 3.4e-30 134.8 79 72.2
Nitab4.5_0004946g0010 Nicotiana tabacum HOM05D001372 ORTHO05D007311 3.4e-30 134.8 79 77.2
QL11p039238 Quercus lobata HOM05D001372 ORTHO05D007311 3.4e-30 134.8 82 70.7
Sc14g0001710 Simmondsia chinensis HOM05D001372 ORTHO05D007311 3.4e-30 134.8 83 69.9
THA.LOC104819597 Tarenaya hassleriana HOM05D001372 ORTHO05D007311 4.4e-30 134.4 83 74.7
Aqoxy6G00480 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 5.8e-30 134.0 82 69.5
BraA07t28279Z Brassica rapa HOM05D001372 ORTHO05D007311 5.8e-30 134.0 81 70.4
Thhalv10023083m.g Eutrema salsugineum HOM05D001372 ORTHO05D002010 5.8e-30 134.0 75 76.0
Nn7g36402 Nelumbo nucifera HOM05D001372 ORTHO05D007311 7.5e-30 133.7 85 71.8
BcaC06g36100 Brassica carinata HOM05D001372 ORTHO05D007311 9.8e-30 133.3 82 70.7
C07p07850 Brassica napus HOM05D001372 ORTHO05D007311 9.8e-30 133.3 82 70.7
BolC7t41203H Brassica oleracea HOM05D001372 ORTHO05D007311 9.8e-30 133.3 82 70.7
CSS0021822 Camellia sinensis var. sinensis HOM05D001372 ORTHO05D007311 9.8e-30 133.3 83 71.1
AL3G47750 Arabidopsis lyrata HOM05D001372 ORTHO05D002010 1.3e-29 132.9 79 73.4
Aqoxy230s002 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 1.7e-29 132.5 82 69.5
Aqoxy4G03213 Aquilegia oxysepala HOM05D001372 ORTHO05D007311 1.7e-29 132.5 82 69.5
AT2G15910 Arabidopsis thaliana HOM05D001372 ORTHO05D002010 1.7e-29 132.5 72 79.2
Gorai.006G245400 Gossypium raimondii HOM05D001372 ORTHO05D007311 1.7e-29 132.5 82 69.5
Pp3c17_11290 Physcomitrium patens HOM05D001372 ORTHO05D007311 1.7e-29 132.5 92 64.1
Psat2g085760 Pisum sativum HOM05D001372 ORTHO05D007311 1.7e-29 132.5 86 67.4
Aa31LG8G13440 Aethionema arabicum HOM05D001372 ORTHO05D007311 3.7e-29 131.3 83 71.1
Psat5g239440 Pisum sativum HOM05D001372 ORTHO05D007311 3.7e-29 131.3 63 87.3
Psat5g295360 Pisum sativum HOM05D001372 ORTHO05D007311 3.7e-29 131.3 63 87.3
RcHm_v2.0_Chr6g0259971 Rosa chinensis HOM05D001372 ORTHO05D007311 1.4e-28 129.4 60 93.3
HPP92_025391 Vanilla planifolia HOM05D001372 ORTHO05D007311 3.2e-28 128.3 70 75.7
Gohir.A04G115800 Gossypium hirsutum HOM05D001372 ORTHO05D007311 9.2e-28 126.7 72 70.8
Mapoly0002s0208 Marchantia polymorpha HOM05D001372 ORTHO05D007311 1.6e-27 125.9 88 65.9
Zm00001eb389160 Zea mays HOM05D001372 ORTHO05D007311 3.5e-27 124.8 74 74.3
Lsat_1_v5_gn_2_32760 Lactuca sativa HOM05D001372 ORTHO05D007311 3.0e-26 121.7 72 72.2
Os06g0661600 Oryza sativa ssp. japonica HOM05D001372 ORTHO05D007311 3.9e-26 121.3 71 77.5
Cre16.g653850 Chlamydomonas reinhardtii HOM05D001372 ORTHO05D007311 1.1e-25 119.8 67 73.1
AagrBONN_evm.TU.Sc2ySwM_344.4003 Anthoceros agrestis HOM05D001372 ORTHO05D007311 1.9e-25 119.0 73 69.9
arahy.Tifrunner.gnm1.ann1.YI8NBA Arachis hypogaea HOM05D018927 ORTHO05D003639 2.8e-24 115.2 54 90.7
SMO111G0193 Selaginella moellendorffii HOM05D001372 ORTHO05D007311 3.6e-24 114.8 58 81.0
Nitab4.5_0001401g0190 Nicotiana tabacum HOM05D001372 ORTHO05D007311 8.1e-24 113.6 51 96.1
SHI05448 Sapria himalayana HOM05D001372 ORTHO05D007311 2.0e-22 109.0 52 80.8
Zm00001eb274880 Zea mays HOM05D001372 ORTHO05D007311 1.3e-21 106.3 54 81.5
HanXRQChr07g0193971 Helianthus annuus HOM05D001372 ORTHO05D007311 3.2e-20 101.7 56 71.4
MCO08G009 Micromonas commoda HOM05D001372 ORTHO05D007311 6.0e-19 97.4 66 56.1
PRCOL_00006747 Prasinoderma coloniale HOM05D001372 ORTHO05D007311 8.1e-16 87.0 59 61.0
Cc02_g18230 Coffea canephora HOM05D001372 ORTHO05D007311 2.4e-15 85.5 45 77.8


User provided reference genes

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