Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g24360 Fragaria vesca HOM05D005188 ORTHO05D006153 3.2e-84 315.1 162 100.0
FAN19G1208 Fragaria x ananassa HOM05D005188 ORTHO05D006153 3.2e-84 315.1 162 100.0
FAN28G1395 Fragaria x ananassa HOM05D002517 ORTHO05D003040 4.6e-83 311.2 160 99.4
FAN26G2437 Fragaria x ananassa HOM05D002517 ORTHO05D006153 2.5e-81 305.4 162 98.8
RcHm_v2.0_Chr2g0120891 Rosa chinensis HOM05D005188 ORTHO05D006153 2.4e-79 298.9 162 93.8
MD15G1441800 Malus domestica HOM05D005188 ORTHO05D006153 2.1e-59 232.6 171 76.0
Prupe.4G271200 Prunus persica HOM05D005188 ORTHO05D006153 7.9e-59 230.7 175 75.4
CiPaw.03G121400 Carya illinoinensis HOM05D005188 ORTHO05D006153 1.0e-58 230.3 178 73.0
Lalb_Chr13g0296451 Lupinus albus HOM05D005188 ORTHO05D006153 1.0e-58 230.3 178 71.3
TWI75G0084 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 1.0e-58 230.3 171 73.7
Haze_25240 Corylus avellana HOM05D005188 ORTHO05D006153 2.3e-58 229.2 178 71.3
VMungo0251G2948 Vigna mungo HOM05D005188 ORTHO05D006153 2.3e-58 229.2 177 71.8
Cfa002897 Carpinus fangiana HOM05D005188 ORTHO05D006153 3.0e-58 228.8 178 71.3
Cpa.g.sc3.345 Carica papaya HOM05D005188 ORTHO05D006153 3.9e-58 228.4 173 69.9
Sabra05G0052500 Salix brachista HOM05D005188 ORTHO05D006153 6.7e-58 227.6 175 71.4
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 1.5e-57 226.5 177 70.1
ClCG01G015380 Citrullus lanatus HOM05D005188 ORTHO05D006153 3.3e-57 225.3 174 71.3
Phvul.002G269400 Phaseolus vulgaris HOM05D005188 ORTHO05D006153 3.3e-57 225.3 176 71.0
Thecc.01G132900 Theobroma cacao HOM05D005188 ORTHO05D006153 3.3e-57 225.3 175 69.1
CANSAT01G0911 Cannabis sativa HOM05D005188 ORTHO05D006153 7.4e-57 224.2 172 72.1
MELO3C008060.2 Cucumis melo HOM05D005188 ORTHO05D006153 7.4e-57 224.2 174 70.7
Potri.007G105900 Populus trichocarpa HOM05D005188 ORTHO05D006153 7.4e-57 224.2 175 70.3
QL02p001672 Quercus lobata HOM05D005188 ORTHO05D006153 7.4e-57 224.2 175 71.4
CAN.G792.16 Capsicum annuum HOM05D005188 ORTHO05D006153 1.3e-56 223.4 169 72.8
COL.COLO4_35748 Corchorus olitorius HOM05D005188 ORTHO05D006153 1.3e-56 223.4 174 69.5
Manes.12G156000 Manihot esculenta HOM05D005188 ORTHO05D006153 1.6e-56 223.0 174 71.3
CsaV3_6G041600 Cucumis sativus L. HOM05D005188 ORTHO05D006153 2.1e-56 222.6 174 70.1
Potri.005G063300 Populus trichocarpa HOM05D005188 ORTHO05D006153 2.1e-56 222.6 178 70.2
Aa31LG1G17870 Aethionema arabicum HOM05D005188 ORTHO05D006153 2.8e-56 222.2 173 69.4
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 2.8e-56 222.2 177 68.9
MD01G1004300 Malus domestica HOM05D005188 ORTHO05D006153 2.8e-56 222.2 171 72.5
TWI79G1553 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 2.8e-56 222.2 171 71.9
CiPaw.04G081900 Carya illinoinensis HOM05D005188 ORTHO05D006153 6.3e-56 221.1 179 69.8
Gohir.D11G230800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 6.3e-56 221.1 176 69.9
Lj1g0024625 Lotus japonicus HOM05D005188 ORTHO05D006153 6.3e-56 221.1 170 71.2
Gohir.A11G226800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 8.2e-56 220.7 176 69.9
Ciclev10002687m.g Citrus clementina HOM05D005188 ORTHO05D006153 1.4e-55 219.9 176 71.0
Glyma.04G215800 Glycine max HOM05D005188 ORTHO05D006153 1.4e-55 219.9 170 70.0
Migut.H00702 Erythranthe guttata HOM05D005188 ORTHO05D006153 4.1e-55 218.4 174 70.7
Medtr3g095540 Medicago truncatula HOM05D005188 ORTHO05D006153 4.1e-55 218.4 178 68.0
SalBow1G2748 Salvia bowleyana HOM05D005188 ORTHO05D006153 5.3e-55 218.0 164 75.6
SGA_v2.0_scaffold370G50114 Striga asiatica HOM05D005188 ORTHO05D006153 6.9e-55 217.6 166 70.5
PGR008G0006 Punica granatum HOM05D005188 ORTHO05D006153 9.0e-55 217.2 167 70.1
PGR119G0239 Punica granatum HOM05D005188 ORTHO05D006153 9.0e-55 217.2 167 70.1
Sopen08g004510 Solanum pennellii HOM05D005188 ORTHO05D006153 9.0e-55 217.2 165 72.7
arahy.Tifrunner.gnm1.ann1.DJM1RY Arachis hypogaea HOM05D005188 ORTHO05D006153 1.2e-54 216.9 173 69.9
MSTRG.2649 Avicennia marina HOM05D005188 ORTHO05D006153 1.5e-54 216.5 172 70.3
Lj4g0001203 Lotus japonicus HOM05D005188 ORTHO05D006153 1.5e-54 216.5 167 72.5
TPR.G18740 Trifolium pratense HOM05D005188 ORTHO05D006153 2.0e-54 216.1 179 68.7
arahy.Tifrunner.gnm1.ann1.V5WWJ8 Arachis hypogaea HOM05D005188 ORTHO05D006153 2.6e-54 215.7 173 69.4
Peaxi162Scf01257g00019 Petunia axillaris HOM05D005188 ORTHO05D006153 2.6e-54 215.7 180 65.6
Solyc08g013670.3 Solanum lycopersicum HOM05D005188 ORTHO05D006153 2.6e-54 215.7 166 71.7
Glyma.06G150300 Glycine max HOM05D005188 ORTHO05D006153 3.4e-54 215.3 169 69.2
MBI06_g39404_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 3.4e-54 215.3 176 67.0
CARHR277950 Cardamine hirsuta HOM05D005188 ORTHO05D006153 5.9e-54 214.5 173 68.2
Dinv24366 Davidia involucrata HOM05D005188 ORTHO05D006153 5.9e-54 214.5 171 69.0
Gorai.003G066700 Gossypium raimondii HOM05D005188 ORTHO05D006153 7.6e-54 214.2 183 67.2
Hund23270 Selenicereus undatus HOM05D005188 ORTHO05D006153 7.6e-54 214.2 177 67.2
TAR381G0300 Trochodendron aralioides HOM05D005188 ORTHO05D006153 7.6e-54 214.2 177 67.8
AT5G64040 Arabidopsis thaliana HOM05D005188 ORTHO05D006153 1.3e-53 213.4 172 66.9
Sp2g27110 Schrenkiella parvula HOM05D005188 ORTHO05D006153 1.3e-53 213.4 171 67.8
Ca_16917_v3 Cicer arietinum L. HOM05D005188 ORTHO05D006153 2.2e-53 212.6 175 68.0
Ah.02g121530 Amaranthus hybridus HOM05D005188 ORTHO05D006153 2.9e-53 212.2 167 65.3
Carub.0008s2482 Capsella rubella HOM05D005188 ORTHO05D006153 5.0e-53 211.5 172 67.4
Oeu037826.1 Olea europaea HOM05D005188 ORTHO05D006153 5.0e-53 211.5 172 67.4
Actinidia06616 Actinidia chinensis HOM05D005188 ORTHO05D006153 8.4e-53 210.7 169 67.5
AL8G41300 Arabidopsis lyrata HOM05D005188 ORTHO05D006153 8.4e-53 210.7 172 66.3
Lj2A607T35 Lonicera japonica HOM05D005188 ORTHO05D006153 1.4e-52 209.9 172 68.6
HanXRQChr04g0107551 Helianthus annuus HOM05D005188 ORTHO05D006153 2.5e-52 209.1 169 69.2
unitig_899.g14682 Utricularia gibba HOM05D005188 ORTHO05D006153 2.5e-52 209.1 170 69.4
CDE08G0648 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 3.2e-52 208.8 175 65.7
AUR62017881 Chenopodium quinoa HOM05D005188 ORTHO05D006153 3.2e-52 208.8 169 65.1
Hma1.2p1_0476F.1_g160790 Hydrangea macrophylla HOM05D005188 ORTHO05D006153 3.2e-52 208.8 172 68.0
Sabra07G0086700 Salix brachista HOM05D005188 ORTHO05D006153 3.2e-52 208.8 170 65.3
C09p09640 Brassica napus HOM05D005188 ORTHO05D006153 4.2e-52 208.4 169 68.0
PGSC0003DMG400005805 Solanum tuberosum HOM05D005188 ORTHO05D006153 4.2e-52 208.4 172 68.0
Aqoxy5G02315 Aquilegia oxysepala HOM05D005188 ORTHO05D006153 5.5e-52 208.0 172 66.9
Cc10_g12590 Coffea canephora HOM05D005188 ORTHO05D006153 5.5e-52 208.0 172 65.1
DCAR_001211 Daucus carota HOM05D005188 ORTHO05D006153 7.2e-52 207.6 168 69.6
Thhalv10005005m.g Eutrema salsugineum HOM05D005188 ORTHO05D006153 7.2e-52 207.6 171 67.3
MBI03_g42548_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 7.2e-52 207.6 173 66.5
A06p30750 Brassica napus HOM05D005188 ORTHO05D006153 9.3e-52 207.2 171 65.5
BcaB07g29717 Brassica carinata HOM05D005188 ORTHO05D006153 1.2e-51 206.8 170 65.9
BcaB02g09793 Brassica carinata HOM05D005188 ORTHO05D006153 1.6e-51 206.5 171 65.5
BcaC01g02658 Brassica carinata HOM05D005188 ORTHO05D006153 1.6e-51 206.5 171 65.5
BcaC01g02659 Brassica carinata HOM05D005188 ORTHO05D006153 1.6e-51 206.5 171 65.5
Nn2g12180 Nelumbo nucifera HOM05D005188 ORTHO05D006153 1.6e-51 206.5 176 64.2
ATR0987G005 Amborella trichopoda HOM05D005188 ORTHO05D006153 3.5e-51 205.3 178 62.4
C02p63110 Brassica napus HOM05D005188 ORTHO05D006153 4.6e-51 204.9 170 65.3
BolC2t12383H Brassica oleracea HOM05D005188 ORTHO05D006153 4.6e-51 204.9 170 65.3
Lsat_1_v5_gn_1_10061 Lactuca sativa HOM05D005188 ORTHO05D006153 6.1e-51 204.5 171 67.8
BcaC03g18240 Brassica carinata HOM05D005188 ORTHO05D006153 7.9e-51 204.1 170 65.3
ECA247G1960 Erigeron canadensis HOM05D005188 ORTHO05D006153 1.0e-50 203.8 166 67.5
Sed0010246 Sechium edule HOM05D005188 ORTHO05D006153 1.3e-50 203.4 172 67.4
Psat5g063680 Pisum sativum HOM05D005188 ORTHO05D006153 1.8e-50 203.0 176 65.3
THA.LOC104800083 Tarenaya hassleriana HOM05D005188 ORTHO05D006153 3.0e-50 202.2 174 64.9
Sed0019160 Sechium edule HOM05D005188 ORTHO05D006153 1.1e-49 200.3 177 63.8
CDE02G4401 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 1.5e-49 199.9 175 64.6
Rhsim10G0133700 Rhododendron simsii HOM05D005188 ORTHO05D006153 1.9e-49 199.5 174 65.5
BolC9t53875H Brassica oleracea HOM05D005188 ORTHO05D006153 3.3e-49 198.7 180 63.3
CSS0010064 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 3.3e-49 198.7 175 66.3
CSS0045275 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 3.3e-49 198.7 175 66.3
Nitab4.5_0000673g0170 Nicotiana tabacum HOM05D005188 ORTHO05D006153 7.4e-49 197.6 171 66.7
PSO541G2775 Papaver somniferum HOM05D005188 ORTHO05D006153 7.4e-49 197.6 167 62.3
GSVIVG01026478001 Vitis vinifera HOM05D005188 ORTHO05D006153 1.6e-48 196.4 163 65.6
vmacro12795 Vaccinium macrocarpon HOM05D005188 ORTHO05D006153 2.8e-48 195.7 175 62.3
PSO675G9377 Papaver somniferum HOM05D005188 ORTHO05D006153 1.1e-47 193.7 167 61.7
Atru.chr4.905 Acer truncatum HOM05D005188 ORTHO05D006153 1.4e-47 193.4 171 64.3
HPP92_019391 Vanilla planifolia HOM05D005188 ORTHO05D006153 1.4e-47 193.4 169 64.5
MBI06_g27435_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 1.8e-47 193.0 149 68.5
EL10Ac6g15302 Beta vulgaris HOM05D005188 ORTHO05D006153 3.1e-47 192.2 126 75.4
Oeu050119.1 Olea europaea HOM05D005188 ORTHO05D006153 4.5e-46 188.3 163 63.2
Os12g0189400 Oryza sativa ssp. japonica HOM05D005188 ORTHO05D006153 1.9e-44 183.0 136 68.4
BolC3t18491H Brassica oleracea HOM05D005188 ORTHO05D006153 1.6e-43 179.9 175 59.4
Zm00001eb138650 Zea mays HOM05D005188 ORTHO05D006153 1.6e-43 179.9 147 61.9
Zm00001eb409220 Zea mays HOM05D005188 ORTHO05D006153 6.7e-42 174.5 160 60.0
A09p08510 Brassica napus HOM05D005188 ORTHO05D006153 7.4e-41 171.0 169 59.8
BraA09t36500Z Brassica rapa HOM05D005188 ORTHO05D006153 7.4e-41 171.0 169 59.8
SEGI_16120 Sequoiadendron giganteum HOM05D005188 ORTHO05D006153 1.4e-36 156.8 122 63.1
Duzib264G0557 Durio zibethinus HOM05D005188 ORTHO05D006153 1.9e-36 156.4 146 63.0
Eucgr.I00200 Eucalyptus grandis HOM05D005188 ORTHO05D006153 3.6e-35 152.1 145 65.5
Duzib147G0711 Durio zibethinus HOM05D005188 ORTHO05D006153 1.4e-34 150.2 146 62.3
BraA06t26017Z Brassica rapa HOM05D005188 ORTHO05D006153 4.4e-33 145.2 141 61.0
SMO144G0055 Selaginella moellendorffii HOM05D005188 ORTHO05D006153 4.4e-33 145.2 82 79.3
C03p62290 Brassica napus HOM05D005188 ORTHO05D006153 7.4e-33 144.4 141 61.0
Sc16g0003820 Simmondsia chinensis HOM05D005188 ORTHO05D006153 1.7e-32 143.3 143 60.8
BcaB08g36594 Brassica carinata HOM05D005188 ORTHO05D006153 1.0e-29 134.0 74 85.1
BolC2t07163H Brassica oleracea HOM05D005188 ORTHO05D006153 2.2e-29 132.9 74 83.8
BolC7t41311H Brassica oleracea HOM05D005188 ORTHO05D006153 2.9e-29 132.5 72 86.1
BcaB04g17222 Brassica carinata HOM05D005188 ORTHO05D006153 1.1e-28 130.6 125 57.6
BcaC04g18786 Brassica carinata HOM05D005188 ORTHO05D006153 1.1e-28 130.6 74 82.4
Duzib187G0538 Durio zibethinus HOM05D005188 ORTHO05D006153 8.2e-24 114.4 130 56.2
Cre02.g082500 Chlamydomonas reinhardtii HOM05D005188 ORTHO05D006153 2.0e-22 109.8 137 49.6
Mapoly0116s0042 Marchantia polymorpha HOM05D005188 ORTHO05D006153 3.5e-22 109.0 157 42.7
AUR62003566 Chenopodium quinoa HOM05D005188 ORTHO05D006153 1.7e-21 106.7 168 44.0
BcaC03g13890 Brassica carinata HOM05D005188 ORTHO05D006153 1.9e-20 103.2 74 67.6
AagrBONN_evm.TU.Sc2ySwM_362.2803 Anthoceros agrestis HOM05D005188 ORTHO05D006153 3.2e-20 102.4 93 60.2
PRCOL_00004565 Prasinoderma coloniale HOM05D005188 ORTHO05D006153 7.0e-15 84.7 85 51.8
MCO09G058 Micromonas commoda HOM05D005188 ORTHO05D006153 1.2e-14 84.0 103 45.6
CBR_g45633 Chara braunii HOM05D005188 ORTHO05D006153 4.5e-14 82.0 137 43.1
BraA02t09233Z Brassica rapa HOM05D005188 ORTHO05D006153 4.7e-11 72.0 113 49.6
Gohir.D04G031000 Gossypium hirsutum HOM05D006465 ORTHO05D008207 4.7e-11 72.0 104 50.0
Nitab4.5_0005544g0070 Nicotiana tabacum HOM05D005188 ORTHO05D006153 4.0e-10 68.9 107 49.5
Nn5g28540 Nelumbo nucifera HOM05D005188 ORTHO05D006153 8.8e-10 67.8 104 50.0
C02p10930 Brassica napus HOM05D005188 ORTHO05D006153 4.9e-08 62.0 30 83.3
A02p43130 Brassica napus HOM05D005188 ORTHO05D006153 3.1e-07 59.3 98 46.9


User provided reference genes

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