Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_1g09260 Fragaria vesca HOM05D007531 ORTHO05D009484 7.7e-47 190.3 105 100.0
FAN19G1112 Fragaria x ananassa HOM05D007531 ORTHO05D009484 7.7e-47 190.3 105 100.0
FAN23G0531 Fragaria x ananassa HOM05D007531 ORTHO05D009484 2.5e-45 185.3 105 94.3
FAN26G1659 Fragaria x ananassa HOM05D007531 ORTHO05D009484 2.1e-44 182.2 105 95.2
FAN26G1806 Fragaria x ananassa HOM05D007531 ORTHO05D009484 2.1e-44 182.2 105 95.2
FAN28G0689 Fragaria x ananassa HOM05D007531 ORTHO05D009484 4.2e-37 157.9 105 83.8
RcHm_v2.0_Chr2g0095821 Rosa chinensis HOM05D007531 ORTHO05D009484 7.2e-37 157.1 105 84.8
Dinv42427 Davidia involucrata HOM05D007531 ORTHO05D009484 2.9e-22 108.6 105 50.5
MD15G1222700 Malus domestica HOM05D007531 ORTHO05D009484 1.1e-21 106.7 107 57.0
Prupe.7G193100 Prunus persica HOM05D007531 ORTHO05D009484 1.2e-20 103.2 107 52.3
COL.COLO4_21218 Corchorus olitorius HOM05D007531 ORTHO05D009484 2.7e-20 102.1 107 50.5
Duzib168G1872 Durio zibethinus HOM05D007531 ORTHO05D009484 2.7e-20 102.1 105 51.4
Duzib150G1567 Durio zibethinus HOM05D007531 ORTHO05D009484 1.0e-19 100.1 106 49.1
Manes.03G043400 Manihot esculenta HOM05D007531 ORTHO05D009484 1.0e-19 100.1 107 51.4
Thecc.09G071300 Theobroma cacao HOM05D007531 ORTHO05D009484 3.0e-19 98.6 107 49.5
TWI63G1700 Tripterygium wilfordii HOM05D007531 ORTHO05D009484 8.8e-19 97.1 105 47.6
Cpa.g.sc82.75 Carica papaya HOM05D007531 ORTHO05D009484 1.2e-18 96.7 105 50.5
CANSAT56G3767 Cannabis sativa HOM05D007531 ORTHO05D009484 2.0e-18 95.9 107 48.6
GSVIVG01015026001 Vitis vinifera HOM05D007531 ORTHO05D009484 4.4e-18 94.7 105 45.7
CSS0023587 Camellia sinensis var. sinensis HOM05D007531 ORTHO05D009484 7.5e-18 94.0 105 48.6
Potri.006G137401 Populus trichocarpa HOM05D007531 ORTHO05D009484 7.5e-18 94.0 66 66.7
Actinidia39623 Actinidia chinensis HOM05D007531 ORTHO05D009484 9.8e-18 93.6 105 49.5
SGA_v2.0_scaffold296G47570 Striga asiatica HOM05D007531 ORTHO05D009484 2.8e-17 92.0 74 56.8
Sc14g0000480 Simmondsia chinensis HOM05D007531 ORTHO05D009484 3.7e-17 91.7 105 44.8
MSTRG.19432 Avicennia marina HOM05D007531 ORTHO05D009484 4.8e-17 91.3 108 46.3
BcaB07g31940 Brassica carinata HOM05D007531 ORTHO05D009484 6.3e-17 90.9 105 47.6
BcaC07g38992 Brassica carinata HOM05D007531 ORTHO05D009484 6.3e-17 90.9 105 47.6
Ciclev10010006m.g Citrus clementina HOM05D007531 ORTHO05D009484 8.3e-17 90.5 105 54.3
Aa31LG7G3950 Aethionema arabicum HOM05D007531 ORTHO05D009484 1.1e-16 90.1 107 46.7
Carub.0001s1884 Capsella rubella HOM05D007531 ORTHO05D009484 1.1e-16 90.1 106 49.1
Gorai.004G285500 Gossypium raimondii HOM05D007531 ORTHO05D009484 1.1e-16 90.1 105 47.6
TAR626G0337 Trochodendron aralioides HOM05D007531 ORTHO05D009484 1.1e-16 90.1 67 62.7
Manes.16G092000 Manihot esculenta HOM05D007531 ORTHO05D009484 1.4e-16 89.7 107 46.7
THA.LOC104809045 Tarenaya hassleriana HOM05D007531 ORTHO05D009484 1.4e-16 89.7 105 45.7
Gohir.A08G246700 Gossypium hirsutum HOM05D007531 ORTHO05D009484 1.8e-16 89.4 105 46.7
Atru.chr7.1757 Acer truncatum HOM05D007531 ORTHO05D009484 3.1e-16 88.6 70 64.3
Nitab4.5_0001092g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 4.1e-16 88.2 105 44.8
Migut.L01591 Erythranthe guttata HOM05D007531 ORTHO05D009484 7.0e-16 87.4 105 45.7
Gohir.D08G267900 Gossypium hirsutum HOM05D007531 ORTHO05D009484 9.1e-16 87.0 105 46.7
Sp1g17150 Schrenkiella parvula HOM05D007531 ORTHO05D009484 9.1e-16 87.0 107 45.8
Nitab4.5_0001699g0060 Nicotiana tabacum HOM05D007531 ORTHO05D009484 1.2e-15 86.7 104 46.2
QL11p002692 Quercus lobata HOM05D007531 ORTHO05D009484 2.7e-15 85.5 107 45.8
Oeu028116.1 Olea europaea HOM05D007531 ORTHO05D009484 3.5e-15 85.1 105 40.0
AL1G31820 Arabidopsis lyrata HOM05D007531 ORTHO05D009484 4.5e-15 84.7 106 45.3
Thhalv10009175m.g Eutrema salsugineum HOM05D007531 ORTHO05D009484 5.9e-15 84.3 105 47.6
Rhsim05G0002900 Rhododendron simsii HOM05D007531 ORTHO05D009484 5.9e-15 84.3 105 46.7
PGR042G0735 Punica granatum HOM05D007531 ORTHO05D009484 1.3e-14 83.2 107 43.9
Sopen07g022090 Solanum pennellii HOM05D007531 ORTHO05D009484 1.3e-14 83.2 104 46.2
BolC5t30467H Brassica oleracea HOM05D007531 ORTHO05D009484 1.7e-14 82.8 105 43.8
Nitab4.5_0007540g0040 Nicotiana tabacum HOM05D007531 ORTHO05D009484 1.7e-14 82.8 103 43.7
SalBow6G4078 Salvia bowleyana HOM05D007531 ORTHO05D009484 2.2e-14 82.4 110 39.1
PGSC0003DMG400013576 Solanum tuberosum HOM05D007531 ORTHO05D009484 2.2e-14 82.4 107 45.8
HPP92_021129 Vanilla planifolia HOM05D007531 ORTHO05D009484 2.2e-14 82.4 63 60.3
HPP92_021130 Vanilla planifolia HOM05D007531 ORTHO05D009484 2.2e-14 82.4 63 60.3
CAN.G660.22 Capsicum annuum HOM05D007531 ORTHO05D009484 3.8e-14 81.6 103 42.7
CDE06G0851 Ceratophyllum demersum HOM05D007531 ORTHO05D009484 3.8e-14 81.6 86 50.0
Solyc07g042450.3 Solanum lycopersicum HOM05D007531 ORTHO05D009484 3.8e-14 81.6 104 45.2
ClCG11G000070 Citrullus lanatus HOM05D007531 ORTHO05D009484 5.0e-14 81.3 68 55.9
Aqoxy7G04136 Aquilegia oxysepala HOM05D007531 ORTHO05D009484 6.5e-14 80.9 105 43.8
Dinv25515 Davidia involucrata HOM05D007531 ORTHO05D009484 8.5e-14 80.5 98 41.8
Eucgr.H05011 Eucalyptus grandis HOM05D007531 ORTHO05D009484 1.1e-13 80.1 71 53.5
Hma1.2p1_0519F.1_g171380 Hydrangea macrophylla HOM05D007531 ORTHO05D009484 1.1e-13 80.1 105 45.7
EL10Ac8g18992 Beta vulgaris HOM05D007531 ORTHO05D009484 1.9e-13 79.3 105 42.9
AT1G19240 Arabidopsis thaliana HOM05D007531 ORTHO05D009484 2.5e-13 79.0 106 41.5
Lsat_1_v5_gn_7_35440 Lactuca sativa HOM05D007531 ORTHO05D009484 4.2e-13 78.2 62 59.7
C05p17640 Brassica napus HOM05D007531 ORTHO05D009484 5.5e-13 77.8 57 64.9
Cfa002948 Carpinus fangiana HOM05D007531 ORTHO05D009484 5.5e-13 77.8 106 40.6
DCAR_010491 Daucus carota HOM05D007531 ORTHO05D009484 5.5e-13 77.8 57 59.6
MBI19_g38003_MAGBIO Magnolia biondii HOM05D007531 ORTHO05D009484 5.5e-13 77.8 58 58.6
CsaV3_5G027570 Cucumis sativus L. HOM05D007531 ORTHO05D009484 9.5e-13 77.0 66 54.5
A06p15390 Brassica napus HOM05D007531 ORTHO05D009484 1.2e-12 76.6 57 63.2
BraA06t24652Z Brassica rapa HOM05D007531 ORTHO05D009484 1.2e-12 76.6 57 63.2
Cc06_g12620 Coffea canephora HOM05D007531 ORTHO05D009484 2.7e-12 75.5 112 40.2
Sabra06G0107500 Salix brachista HOM05D007531 ORTHO05D009484 2.7e-12 75.5 46 71.7
CARHR019840 Cardamine hirsuta HOM05D007531 ORTHO05D009484 4.7e-12 74.7 111 38.7
Peaxi162Scf00191g01018 Petunia axillaris HOM05D007531 ORTHO05D009484 6.1e-12 74.3 103 38.8
ECA246G1013 Erigeron canadensis HOM05D007531 ORTHO05D009484 1.0e-11 73.6 63 50.8
Lj4g0024105 Lotus japonicus HOM05D007531 ORTHO05D009484 1.0e-11 73.6 53 56.6
Medtr4g124770 Medicago truncatula HOM05D007531 ORTHO05D009484 1.4e-11 73.2 53 58.5
unitig_578.g16405 Utricularia gibba HOM05D007531 ORTHO05D009484 1.8e-11 72.8 105 38.1
TPR.G12718 Trifolium pratense HOM05D007531 ORTHO05D009484 2.3e-11 72.4 53 58.5
vmacro17085 Vaccinium macrocarpon HOM05D007531 ORTHO05D009484 4.0e-11 71.6 66 53.0
Psat0s2373g0160 Pisum sativum HOM05D007531 ORTHO05D009484 1.5e-10 69.7 53 54.7
Lalb_Chr11g0074031 Lupinus albus HOM05D007531 ORTHO05D009484 2.0e-10 69.3 72 45.8
arahy.Tifrunner.gnm1.ann1.ETL5CI Arachis hypogaea HOM05D007531 ORTHO05D009484 4.4e-10 68.2 53 56.6
arahy.Tifrunner.gnm1.ann1.J82KAY Arachis hypogaea HOM05D007531 ORTHO05D009484 4.4e-10 68.2 53 56.6
Os01g0144700 Oryza sativa ssp. japonica HOM05D007531 ORTHO05D009484 4.4e-10 68.2 87 40.2
Phvul.004G046500 Phaseolus vulgaris HOM05D007531 ORTHO05D009484 4.4e-10 68.2 53 54.7
VMungo1215G2546 Vigna mungo HOM05D007531 ORTHO05D009484 4.9e-09 64.7 42 64.3
Glyma.17G046400 Glycine max HOM05D007531 ORTHO05D009484 1.1e-08 63.5 48 60.4
Sed0019513 Sechium edule HOM05D007531 ORTHO05D009484 1.1e-08 63.5 43 62.8
Phvul.003G128000 Phaseolus vulgaris HOM05D007531 ORTHO05D009484 1.4e-08 63.2 51 54.9
Glyma.13G113300 Glycine max HOM05D007531 ORTHO05D009484 2.4e-08 62.4 39 66.7
RcHm_v2.0_Chr2g0103611 Rosa chinensis HOM05D007531 ORTHO05D009484 1.3e-06 56.6 54 55.6


User provided reference genes

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