Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G0394 Fragaria x ananassa HOM05D000003 ORTHO05D006737 8.4e-48 193.4 98 100.0
FAN19G1043 Fragaria x ananassa HOM05D000003 ORTHO05D006737 8.4e-48 193.4 98 100.0
FvH4_1g19421 Fragaria vesca HOM05D000003 ORTHO05D006737 1.3e-45 186.0 98 96.9
FAN27G1320 Fragaria x ananassa HOM05D000003 ORTHO05D006737 7.2e-39 163.7 97 84.5
FvH4_2g19503 Fragaria vesca HOM05D000003 ORTHO05D006737 3.6e-38 161.4 95 83.2
FvH4_3g20371 Fragaria vesca HOM05D000003 ORTHO05D000004 1.1e-26 123.2 96 59.4
FvH4_4g20982 Fragaria vesca HOM05D000003 ORTHO05D006737 9.1e-26 120.2 96 58.3
FvH4_3g27973 Fragaria vesca HOM05D000003 ORTHO05D006737 7.7e-25 117.1 96 58.3
FAN15G1410 Fragaria x ananassa HOM05D000003 ORTHO05D006737 3.8e-24 114.8 96 58.3
RcHm_v2.0_Chr1g0314431 Rosa chinensis HOM05D000003 ORTHO05D006737 2.3e-21 105.5 96 53.1
RcHm_v2.0_Chr5g0072311 Rosa chinensis HOM05D000003 ORTHO05D006737 2.3e-21 105.5 96 50.0
FvH4_6g52701 Fragaria vesca HOM05D000003 ORTHO05D006737 4.0e-21 104.8 96 54.2
FAN09G3586 Fragaria x ananassa HOM05D004387 ORTHO05D005218 4.0e-21 104.8 96 51.0
FvH4_3g32552 Fragaria vesca HOM05D000003 ORTHO05D006737 6.7e-21 104.0 96 52.1
RcHm_v2.0_Chr3g0486981 Rosa chinensis HOM05D000003 ORTHO05D006737 1.1e-20 103.2 96 50.0
RcHm_v2.0_Chr5g0065261 Rosa chinensis HOM05D000003 ORTHO05D006737 1.5e-20 102.8 96 49.0
RcHm_v2.0_Chr5g0033371 Rosa chinensis HOM05D000003 ORTHO05D006737 2.0e-20 102.4 93 50.5
FAN12G2468 Fragaria x ananassa HOM05D000003 ORTHO05D006737 2.6e-20 102.1 96 51.0
RcHm_v2.0_Chr1g0328181 Rosa chinensis HOM05D000003 ORTHO05D000004 5.7e-20 100.9 96 47.9
RcHm_v2.0_Chr6g0288751 Rosa chinensis HOM05D000003 ORTHO05D006737 5.7e-20 100.9 96 47.9
FAN02G3749 Fragaria x ananassa HOM05D006625 ORTHO05D008060 7.4e-20 100.5 92 50.0
FAN14G5848 Fragaria x ananassa HOM05D000003 ORTHO05D006737 7.4e-20 100.5 96 51.0
RcHm_v2.0_Chr7g0212601 Rosa chinensis HOM05D000003 ORTHO05D006737 7.4e-20 100.5 96 43.8
FvH4_3g25361 Fragaria vesca HOM05D000003 ORTHO05D006737 1.3e-19 99.8 96 51.0
RcHm_v2.0_Chr1g0336051 Rosa chinensis HOM05D000003 ORTHO05D006737 1.7e-19 99.4 96 47.9
FvH4_6g06990 Fragaria vesca HOM05D000003 ORTHO05D006737 2.2e-19 99.0 96 51.0
RcHm_v2.0_Chr5g0031961 Rosa chinensis HOM05D000003 ORTHO05D006737 2.8e-19 98.6 96 49.0
FAN15G2825 Fragaria x ananassa HOM05D000003 ORTHO05D006737 4.8e-19 97.8 96 50.0
FAN12G3592 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.8e-18 95.9 96 49.0
RcHm_v2.0_Chr1g0344421 Rosa chinensis HOM05D000003 ORTHO05D006737 4.1e-18 94.7 96 47.9
FvH4_5g06193 Fragaria vesca HOM05D000003 ORTHO05D015112 7.0e-18 94.0 96 49.0
FAN25G3140 Fragaria x ananassa HOM05D000003 ORTHO05D006737 7.0e-18 94.0 79 55.7
FvH4_5g31132 Fragaria vesca HOM05D002804 ORTHO05D006737 1.2e-17 93.2 96 43.8
RcHm_v2.0_Chr5g0040041 Rosa chinensis HOM05D000003 ORTHO05D006737 3.5e-17 91.7 96 44.8
FvH4_1g25610 Fragaria vesca HOM05D000003 ORTHO05D000004 4.5e-17 91.3 81 51.9
FvH4_5g33393 Fragaria vesca HOM05D000003 ORTHO05D006737 7.7e-17 90.5 92 45.7
FAN12G1814 Fragaria x ananassa HOM05D000003 ORTHO05D006737 7.7e-17 90.5 84 51.2
FvH4_6g20980 Fragaria vesca HOM05D017784 ORTHO05D006737 1.3e-16 89.7 85 54.1
FAN20G2266 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.3e-16 89.7 93 46.2
RcHm_v2.0_Chr7g0176911 Rosa chinensis HOM05D000003 ORTHO05D006737 1.7e-16 89.4 85 45.9
FvH4_2g00211 Fragaria vesca HOM05D000003 ORTHO05D006737 2.9e-16 88.6 89 48.3
RcHm_v2.0_Chr2g0118121 Rosa chinensis HOM05D000003 ORTHO05D006737 1.1e-15 86.7 85 48.2
FvH4_5g12241 Fragaria vesca HOM05D000003 ORTHO05D000004 2.5e-15 85.5 91 44.0
FAN13G1105 Fragaria x ananassa HOM05D000003 ORTHO05D006737 2.5e-15 85.5 96 43.8
FAN18G0619 Fragaria x ananassa HOM05D000003 ORTHO05D006737 2.5e-15 85.5 96 43.8
FAN01G2436 Fragaria x ananassa HOM05D000003 ORTHO05D006737 7.2e-15 84.0 82 48.8
RcHm_v2.0_Chr4g0397511 Rosa chinensis HOM05D000003 ORTHO05D006737 9.4e-15 83.6 93 45.2
FAN13G3306 Fragaria x ananassa HOM05D000003 ORTHO05D006737 3.6e-14 81.6 94 40.4
RcHm_v2.0_Chr4g0395671 Rosa chinensis HOM05D000003 ORTHO05D006737 3.6e-14 81.6 80 46.2
FvH4_6g08193 Fragaria vesca HOM05D000003 ORTHO05D006737 6.1e-14 80.9 95 40.0
FvH4_6g21171 Fragaria vesca HOM05D000003 ORTHO05D006737 1.8e-13 79.3 88 39.8
FvH4_6g31921 Fragaria vesca HOM05D000003 ORTHO05D006737 2.3e-13 79.0 73 47.9
RcHm_v2.0_Chr7g0198361 Rosa chinensis HOM05D000003 ORTHO05D006737 3.0e-13 78.6 78 42.3
FvH4_4g10782 Fragaria vesca HOM05D000003 ORTHO05D006737 6.8e-13 77.4 82 43.9
FAN01G1087 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.5e-12 76.3 86 41.9
FAN09G3405 Fragaria x ananassa HOM05D003121 ORTHO05D003535 5.7e-12 74.3 50 64.0
RcHm_v2.0_Chr4g0423161 Rosa chinensis HOM05D000003 ORTHO05D006737 5.7e-12 74.3 76 46.1
FAN05G0213 Fragaria x ananassa HOM05D001310 ORTHO05D008060 1.3e-11 73.2 61 50.8
RcHm_v2.0_Chr2g0125521 Rosa chinensis HOM05D000003 ORTHO05D006737 2.8e-11 72.0 89 39.3
FvH4_4g24131 Fragaria vesca HOM05D000003 ORTHO05D015112 6.3e-11 70.9 96 39.6
FAN07G0617 Fragaria x ananassa HOM05D000003 ORTHO05D006737 6.3e-11 70.9 89 38.2
FAN14G3227 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.1e-10 70.1 95 36.8
FvH4_4g07010 Fragaria vesca HOM05D002778 ORTHO05D003112 2.4e-10 68.9 61 54.1
FvH4_3g26222 Fragaria vesca HOM05D000003 ORTHO05D006737 3.1e-10 68.6 76 43.4
FvH4_6g32941 Fragaria vesca HOM05D000003 ORTHO05D006737 7.0e-10 67.4 85 37.6
FvH4_5g30811 Fragaria vesca HOM05D000003 ORTHO05D006737 9.1e-10 67.0 96 37.5
Dinv08495 Davidia involucrata HOM05D000003 ORTHO05D000167 1.3e-08 63.2 89 38.2
FAN05G1256 Fragaria x ananassa HOM05D000031 ORTHO05D000030 1.3e-08 63.2 87 39.1
RcHm_v2.0_Chr3g0474921 Rosa chinensis HOM05D000003 ORTHO05D006737 1.7e-08 62.8 69 46.4
Atru.chr9.2211 Acer truncatum HOM05D000003 ORTHO05D000167 3.8e-08 61.6 94 27.7
Dinv21289 Davidia involucrata HOM05D000079 ORTHO05D000211 3.8e-08 61.6 76 39.5
FvH4_6g12311 Fragaria vesca HOM05D000003 ORTHO05D000004 1.5e-07 59.7 89 37.1
FAN14G2822 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.5e-07 59.7 64 42.2
RcHm_v2.0_Chr5g0036711 Rosa chinensis HOM05D000003 ORTHO05D006737 1.5e-07 59.7 93 36.6
FvH4_6g08250 Fragaria vesca HOM05D000003 ORTHO05D006737 1.9e-07 59.3 64 42.2
Prupe.6G141500 Prunus persica HOM05D000003 ORTHO05D000167 2.5e-07 58.9 83 37.3
FAN01G2975 Fragaria x ananassa HOM05D000003 ORTHO05D006737 3.2e-07 58.5 96 35.4
FAN18G1324 Fragaria x ananassa HOM05D000003 ORTHO05D006737 3.2e-07 58.5 59 47.5
FAN02G2776 Fragaria x ananassa HOM05D000003 ORTHO05D006737 4.2e-07 58.2 54 53.7
QL11p056556 Quercus lobata HOM05D000003 ORTHO05D000167 7.2e-07 57.4 96 35.4
FAN20G0635 Fragaria x ananassa HOM05D007879 ORTHO05D000440 1.2e-06 56.6 37 78.4
Atru.chr8.822 Acer truncatum HOM05D000003 ORTHO05D000167 1.6e-06 56.2 82 32.9
Dinv37210 Davidia involucrata HOM05D000003 ORTHO05D000167 1.6e-06 56.2 88 35.2
Duzib132G0669 Durio zibethinus HOM05D000003 ORTHO05D000167 1.6e-06 56.2 85 32.9
FAN11G2445 Fragaria x ananassa HOM05D058534 ORTHO05D046050 1.6e-06 56.2 39 64.1
Dinv32432 Davidia involucrata HOM05D000003 ORTHO05D011454 2.1e-06 55.8 88 34.1
RcHm_v2.0_Chr7g0239141 Rosa chinensis HOM05D008833 ORTHO05D010662 2.1e-06 55.8 89 32.6
Atru.chr13.2074 Acer truncatum HOM05D000003 ORTHO05D000167 3.6e-06 55.1 84 32.1
FvH4_6g18902 Fragaria vesca HOM05D000003 ORTHO05D010713 4.7e-06 54.7 82 35.4
FAN15G2168 Fragaria x ananassa HOM05D000001 ORTHO05D010829 4.7e-06 54.7 34 79.4
FAN18G4526 Fragaria x ananassa HOM05D000003 ORTHO05D006737 4.7e-06 54.7 43 58.1
RcHm_v2.0_Chr4g0402201 Rosa chinensis HOM05D000003 ORTHO05D000004 6.1e-06 54.3 85 32.9


User provided reference genes

Program Settings