Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G0980 Fragaria x ananassa HOM05D005879 ORTHO05D007432 8.2e-169 597.0 316 100.0
FvH4_1g20700 Fragaria vesca HOM05D005879 ORTHO05D007432 8.0e-140 500.7 318 87.4
FAN26G1261 Fragaria x ananassa HOM05D005879 ORTHO05D007432 1.7e-134 483.0 320 82.8
RcHm_v2.0_Chr2g0113151 Rosa chinensis HOM05D005879 ORTHO05D007432 3.8e-126 455.3 321 76.3
Prupe.6G188100 Prunus persica HOM05D005879 ORTHO05D007432 2.3e-110 402.9 326 66.9
MD05G1043000 Malus domestica HOM05D005879 ORTHO05D007432 1.4e-107 393.7 320 67.8
QL06p049237 Quercus lobata HOM05D005879 ORTHO05D007432 8.1e-100 367.9 337 59.6
Haze_24910 Corylus avellana HOM05D005879 ORTHO05D007432 1.9e-96 356.7 335 59.1
Haze_24914 Corylus avellana HOM05D005879 ORTHO05D007432 1.9e-96 356.7 335 59.1
Cfa017077 Carpinus fangiana HOM05D005879 ORTHO05D007432 7.1e-96 354.8 337 59.1
CiPaw.03G142700 Carya illinoinensis HOM05D005879 ORTHO05D007432 2.1e-92 343.2 328 57.6
Gohir.A11G202400 Gossypium hirsutum HOM05D005879 ORTHO05D007432 4.0e-91 339.0 317 60.6
TWI77G0137 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 2.2e-89 333.2 324 56.8
arahy.Tifrunner.gnm1.ann1.Y76I0L Arachis hypogaea HOM05D005879 ORTHO05D007432 2.9e-89 332.8 320 59.1
Dinv21896 Davidia involucrata HOM05D005879 ORTHO05D007432 2.4e-88 329.7 326 55.2
Gorai.007G237000 Gossypium raimondii HOM05D005879 ORTHO05D007432 3.5e-87 325.9 317 59.0
Gohir.D11G220800 Gossypium hirsutum HOM05D005879 ORTHO05D007432 1.7e-86 323.6 317 58.7
arahy.Tifrunner.gnm1.ann1.F9QSZL Arachis hypogaea HOM05D005879 ORTHO05D007432 2.3e-86 323.2 327 58.7
Sed0022481 Sechium edule HOM05D005879 ORTHO05D007432 8.7e-86 321.2 326 55.8
CARHR246770 Cardamine hirsuta HOM05D005879 ORTHO05D007432 1.9e-85 320.1 329 54.1
Lj4g0026645 Lotus japonicus HOM05D005879 ORTHO05D007432 2.5e-85 319.7 327 54.1
VMungo0251G0721 Vigna mungo HOM05D005879 ORTHO05D007432 9.6e-85 317.8 326 54.9
ClCG07G017360 Citrullus lanatus HOM05D005879 ORTHO05D007432 3.6e-84 315.8 324 54.0
PSO339G2019 Papaver somniferum HOM05D005879 ORTHO05D007432 3.6e-84 315.8 330 51.5
TWI81G0999 Tripterygium wilfordii HOM05D005879 ORTHO05D007432 3.6e-84 315.8 319 55.5
CsaV3_4G004590 Cucumis sativus L. HOM05D005879 ORTHO05D007432 4.8e-84 315.5 330 52.7
CsaV3_UNG120970 Cucumis sativus L. HOM05D005879 ORTHO05D007432 4.8e-84 315.5 330 52.7
CsaV3_UNG160200 Cucumis sativus L. HOM05D005879 ORTHO05D007432 4.8e-84 315.5 330 52.7
CsaV3_UNG223580 Cucumis sativus L. HOM05D005879 ORTHO05D007432 4.8e-84 315.5 330 52.7
MELO3C017607.2 Cucumis melo HOM05D005879 ORTHO05D007432 1.8e-83 313.5 330 53.0
TPR.G6200 Trifolium pratense HOM05D005879 ORTHO05D007432 2.4e-83 313.2 355 51.8
THA.LOC104807688 Tarenaya hassleriana HOM05D005879 ORTHO05D007432 4.0e-83 312.4 328 54.0
Sopen05g031350 Solanum pennellii HOM05D005879 ORTHO05D007432 5.3e-83 312.0 330 52.7
AL7G12180 Arabidopsis lyrata HOM05D005879 ORTHO05D007432 1.2e-82 310.8 331 53.2
Potri.005G074700 Populus trichocarpa HOM05D005879 ORTHO05D007432 1.2e-82 310.8 320 57.5
Solyc05g052840.1 Solanum lycopersicum HOM05D005879 ORTHO05D007432 1.5e-82 310.5 325 53.2
Lalb_Chr06g0163471 Lupinus albus HOM05D005879 ORTHO05D007432 2.0e-82 310.1 318 54.4
Phvul.002G256800 Phaseolus vulgaris HOM05D005879 ORTHO05D007432 2.0e-82 310.1 294 56.5
Ah.11g050680 Amaranthus hybridus HOM05D005879 ORTHO05D007432 2.6e-82 309.7 315 53.0
Cpa.g.sc615.1 Carica papaya HOM05D005879 ORTHO05D007432 2.6e-82 309.7 327 53.8
Glyma.08G134800 Glycine max HOM05D005879 ORTHO05D007432 3.4e-82 309.3 324 54.0
TAR381G0927 Trochodendron aralioides HOM05D005879 ORTHO05D007432 4.4e-82 308.9 329 50.8
Aa31LG6G15340 Aethionema arabicum HOM05D005879 ORTHO05D007432 5.8e-82 308.5 321 52.3
PGSC0003DMG400027189 Solanum tuberosum HOM05D005879 ORTHO05D007432 7.6e-82 308.1 330 52.1
PSO801G0022 Papaver somniferum HOM05D005879 ORTHO05D007432 9.9e-82 307.8 330 50.0
AUR62028624 Chenopodium quinoa HOM05D005879 ORTHO05D007432 1.3e-81 307.4 318 52.5
Nn2g14007 Nelumbo nucifera HOM05D005879 ORTHO05D007432 2.9e-81 306.2 327 49.2
Carub.0007s0187 Capsella rubella HOM05D005879 ORTHO05D007432 3.8e-81 305.8 328 53.0
Hma1.2p1_0308F.1_g120270 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 3.8e-81 305.8 319 55.2
Medtr8g090180 Medicago truncatula HOM05D005879 ORTHO05D007432 4.9e-81 305.4 322 53.4
EL10Ac5g10569 Beta vulgaris HOM05D005879 ORTHO05D007432 6.4e-81 305.1 313 52.4
AUR62008049 Chenopodium quinoa HOM05D005879 ORTHO05D007432 8.4e-81 304.7 312 52.2
Sabra05G0061500 Salix brachista HOM05D005879 ORTHO05D007432 8.4e-81 304.7 320 54.1
COL.COLO4_27255 Corchorus olitorius HOM05D005879 ORTHO05D007432 1.1e-80 304.3 302 55.6
Sc05g0001510 Simmondsia chinensis HOM05D005879 ORTHO05D007432 3.2e-80 302.8 320 52.2
Atru.chr7.1487 Acer truncatum HOM05D005879 ORTHO05D007432 1.2e-79 300.8 313 53.0
Aqoxy3G00238 Aquilegia oxysepala HOM05D005879 ORTHO05D007432 6.0e-79 298.5 330 50.9
Duzib147G1529 Durio zibethinus HOM05D005879 ORTHO05D007432 1.0e-78 297.7 242 62.4
Sp7g35960 Schrenkiella parvula HOM05D005879 ORTHO05D007432 1.0e-78 297.7 336 51.5
Nitab4.5_0009581g0010 Nicotiana tabacum HOM05D005879 ORTHO05D007432 1.3e-78 297.4 337 49.6
AT4G39920 Arabidopsis thaliana HOM05D005879 ORTHO05D007432 1.7e-78 297.0 330 51.2
Ca_17743_v3 Cicer arietinum L. HOM05D005879 ORTHO05D007432 3.0e-78 296.2 330 51.2
Ciclev10020973m.g Citrus clementina HOM05D005879 ORTHO05D007432 5.1e-78 295.4 317 53.0
Thhalv10025595m.g Eutrema salsugineum HOM05D005879 ORTHO05D007432 6.6e-78 295.0 326 54.6
Manes.12G134100 Manihot esculenta HOM05D005879 ORTHO05D007432 1.9e-77 293.5 323 52.0
BraA03t15633Z Brassica rapa HOM05D005879 ORTHO05D007432 7.3e-77 291.6 323 51.1
Eucgr.B03900 Eucalyptus grandis HOM05D005879 ORTHO05D007432 9.6e-77 291.2 330 52.4
A03p65800 Brassica napus HOM05D005879 ORTHO05D007432 1.6e-76 290.4 323 50.8
HanXRQChr17g0554861 Helianthus annuus HOM05D005879 ORTHO05D007432 2.1e-76 290.0 321 48.9
BolC7t46692H Brassica oleracea HOM05D005879 ORTHO05D007432 3.6e-76 289.3 322 51.2
Glyma.05G177800 Glycine max HOM05D005879 ORTHO05D007432 6.2e-76 288.5 329 50.5
Cc07_g15080 Coffea canephora HOM05D005879 ORTHO05D007432 1.4e-75 287.3 336 49.4
PSO170G2230 Papaver somniferum HOM05D005879 ORTHO05D007432 4.0e-75 285.8 320 48.8
CAN.G151.26 Capsicum annuum HOM05D005879 ORTHO05D007432 1.2e-74 284.3 327 48.9
Thecc.01G100600 Theobroma cacao HOM05D005879 ORTHO05D007432 1.5e-74 283.9 239 60.3
vmacro12962 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 2.0e-74 283.5 354 46.9
Migut.L00135 Erythranthe guttata HOM05D005879 ORTHO05D007432 2.6e-74 283.1 325 48.6
Peaxi162Scf00054g00186 Petunia axillaris HOM05D005879 ORTHO05D007432 3.4e-74 282.7 320 50.0
C07p62780 Brassica napus HOM05D005879 ORTHO05D007432 4.5e-74 282.3 322 50.6
Oeu032409.1 Olea europaea HOM05D005879 ORTHO05D007432 1.7e-73 280.4 334 49.7
DCAR_003483 Daucus carota HOM05D005879 ORTHO05D007432 2.9e-73 279.6 326 51.2
SGA_v2.0_scaffold115G32189 Striga asiatica HOM05D005879 ORTHO05D007432 3.8e-73 279.3 332 46.7
Lsat_1_v5_gn_8_137181 Lactuca sativa HOM05D005879 ORTHO05D007432 4.9e-73 278.9 314 49.7
Rhsim01G0133800 Rhododendron simsii HOM05D005879 ORTHO05D007432 2.4e-72 276.6 355 44.8
RhsimUnG0233600 Rhododendron simsii HOM05D005879 ORTHO05D007432 2.4e-72 276.6 355 44.8
MSTRG.3773 Avicennia marina HOM05D005879 ORTHO05D007432 5.4e-72 275.4 332 47.3
SGA_v2.0_scaffold334G49051 Striga asiatica HOM05D005879 ORTHO05D007432 5.4e-72 275.4 332 46.4
PGR102G2441 Punica granatum HOM05D005879 ORTHO05D007432 4.6e-71 272.3 238 58.8
ATR0584G053 Amborella trichopoda HOM05D005879 ORTHO05D007432 7.9e-71 271.6 325 45.8
ECA233G0618 Erigeron canadensis HOM05D005879 ORTHO05D007432 7.9e-71 271.6 320 46.9
MBI05_g37046_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 2.3e-70 270.0 340 46.5
FAN23G0004 Fragaria x ananassa HOM05D005879 ORTHO05D007432 3.0e-70 269.6 134 94.8
SalBow7G4497 Salvia bowleyana HOM05D005879 ORTHO05D007432 3.0e-70 269.6 322 48.4
unitig_32.g10701 Utricularia gibba HOM05D005879 ORTHO05D007432 3.0e-70 269.6 327 46.8
CDE04G0616 Ceratophyllum demersum HOM05D005879 ORTHO05D007432 8.1e-68 261.5 319 43.9
vmacro17311 Vaccinium macrocarpon HOM05D005879 ORTHO05D007432 1.1e-67 261.2 263 52.1
HPP92_013925 Vanilla planifolia HOM05D005879 ORTHO05D007432 2.0e-66 256.9 312 47.8
VMungo0540G1211 Vigna mungo HOM05D005879 ORTHO05D007432 1.7e-65 253.8 206 61.7
Hma1.2p1_0308F.1_g120280 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 3.8e-65 252.7 173 70.5
Atru.chr11.1549 Acer truncatum HOM05D005879 ORTHO05D007432 3.9e-62 242.7 163 68.7
Os02g0557000 Oryza sativa ssp. japonica HOM05D005879 ORTHO05D007432 1.9e-61 240.4 320 48.1
Zm00001eb243870 Zea mays HOM05D005879 ORTHO05D007432 8.2e-60 235.0 336 43.2
MD01G1031400 Malus domestica HOM05D005879 ORTHO05D007432 9.3e-56 221.5 129 81.4
arahy.Tifrunner.gnm1.ann1.DH96WI Arachis hypogaea HOM05D005879 ORTHO05D007432 9.7e-53 211.5 282 47.2
Pp3c13_2250 Physcomitrium patens HOM05D005879 ORTHO05D007432 2.0e-50 203.8 329 41.6
AagrBONN_evm.TU.Sc2ySwM_117.1918 Anthoceros agrestis HOM05D005879 ORTHO05D007432 3.4e-50 203.0 325 39.4
SEGI_25682 Sequoiadendron giganteum HOM05D005879 ORTHO05D007432 1.3e-49 201.1 173 54.3
SMO143G0283 Selaginella moellendorffii HOM05D005879 ORTHO05D007432 2.2e-49 200.3 321 39.3
Psat7g055120 Pisum sativum HOM05D005879 ORTHO05D007432 7.2e-48 195.3 294 43.5
Potri.007G093800 Populus trichocarpa HOM05D005879 ORTHO05D007432 9.4e-48 194.9 297 41.8
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 7.9e-47 191.8 259 40.9
Mapoly0002s0046 Marchantia polymorpha HOM05D005879 ORTHO05D007432 9.7e-45 184.9 340 38.8
Atru.chr7.1491 Acer truncatum HOM05D005879 ORTHO05D007432 2.7e-39 166.8 224 47.3
BcaB03g12293 Brassica carinata HOM05D005879 ORTHO05D007432 1.3e-33 147.9 198 47.0
Actinidia28237 Actinidia chinensis HOM05D005879 ORTHO05D007432 8.5e-33 145.2 297 36.4
MCO11G662 Micromonas commoda HOM05D005879 ORTHO05D007432 8.0e-31 138.7 343 31.5
C03p78540 Brassica napus HOM05D005879 ORTHO05D007432 1.0e-30 138.3 298 36.6
Migut.L00117 Erythranthe guttata HOM05D005879 ORTHO05D007432 5.3e-27 125.9 86 67.4
Cre03.g200150 Chlamydomonas reinhardtii HOM05D005879 ORTHO05D007432 1.2e-26 124.8 143 44.1
PRCOL_00003435 Prasinoderma coloniale HOM05D005879 ORTHO05D007432 2.0e-26 124.0 314 30.3
HPP92_014012 Vanilla planifolia HOM05D005879 ORTHO05D007432 3.5e-26 123.2 210 41.9
BolC3t20106H Brassica oleracea HOM05D005879 ORTHO05D007432 5.0e-25 119.4 303 33.7
BraA08t34278Z Brassica rapa HOM05D005879 ORTHO05D007432 1.5e-21 107.8 77 68.8
MBI15_g14577_MAGBIO Magnolia biondii HOM05D005879 ORTHO05D007432 1.7e-20 104.4 87 56.3
Hma1.2p1_0297F.1_g117050 Hydrangea macrophylla HOM05D005879 ORTHO05D007432 1.2e-18 98.2 90 58.9
PRCOL_00004923 Prasinoderma coloniale HOM05D005879 ORTHO05D034414 1.1e-16 91.7 150 32.0
A08p23210 Brassica napus HOM05D005879 ORTHO05D007432 7.2e-16 89.0 60 68.3
GSVIVG01004856001 Vitis vinifera HOM05D005879 ORTHO05D007432 1.2e-13 81.6 120 45.0
Medtr1g108500 Medicago truncatula HOM05D011368 ORTHO05D000135 6.3e-12 75.9 92 55.4
BcaNung02300 Brassica carinata HOM05D005879 ORTHO05D007432 2.5e-08 63.9 127 39.4
Pp3c4_21480 Physcomitrium patens HOM05D005879 ORTHO05D007432 3.3e-08 63.5 58 55.2
MCO14G569 Micromonas commoda HOM05D033910 ORTHO05D034414 2.1e-07 60.8 180 24.4


User provided reference genes

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