Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.3e-154 549.7 271 100.0
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 2.6e-131 472.2 274 88.7
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 8.7e-111 404.1 273 78.4
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 5.8e-107 391.3 273 76.2
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 3.2e-105 385.6 273 74.7
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 8.8e-95 350.9 251 74.1
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 7.2e-89 331.3 274 66.1
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 8.2e-85 317.8 278 65.1
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 3.5e-75 285.8 269 58.4
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 7.5e-70 268.1 246 57.3
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 1.7e-69 266.9 284 54.6
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 4.5e-67 258.8 272 54.0
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 1.0e-66 257.7 252 54.8
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 2.2e-66 256.5 269 54.3
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 2.9e-66 256.1 270 54.1
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 5.0e-66 255.4 228 59.6
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 6.5e-66 255.0 235 57.9
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 1.1e-65 254.2 274 52.9
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 1.5e-65 253.8 284 52.5
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 3.2e-65 252.7 284 54.2
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 3.2e-65 252.7 211 61.6
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 3.2e-65 252.7 211 61.6
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 4.2e-65 252.3 251 56.2
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 7.2e-65 251.5 209 62.7
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 1.2e-64 250.8 275 56.0
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 1.6e-64 250.4 235 56.6
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 2.1e-64 250.0 269 51.7
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 4.7e-64 248.8 275 50.5
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 6.1e-64 248.4 276 52.5
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 6.1e-64 248.4 275 50.9
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 1.8e-63 246.9 268 53.4
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 1.8e-63 246.9 270 53.0
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 2.3e-63 246.5 264 53.0
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 4.0e-63 245.7 279 53.0
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 6.8e-63 245.0 210 60.5
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 1.2e-62 244.2 219 60.3
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 1.5e-62 243.8 256 53.5
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 3.4e-62 242.7 244 55.3
MD17G1279300 Malus domestica HOM05D004068 ORTHO05D004700 4.4e-62 242.3 162 80.2
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 9.8e-62 241.1 244 54.9
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 1.3e-61 240.7 210 59.5
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 2.2e-61 240.0 210 59.5
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 2.8e-61 239.6 278 51.4
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 3.7e-61 239.2 210 59.0
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 4.8e-61 238.8 275 50.5
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 6.3e-61 238.4 273 51.3
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 5.4e-60 235.3 205 59.0
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 9.1e-60 234.6 222 55.9
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 2.0e-59 233.4 258 51.2
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 2.7e-59 233.0 262 51.1
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 3.5e-59 232.6 256 51.6
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 4.5e-59 232.3 258 51.6
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 1.3e-58 230.7 264 48.9
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 2.3e-58 229.9 264 48.9
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 2.9e-58 229.6 287 47.7
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 2.9e-58 229.6 258 49.6
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 3.8e-58 229.2 264 48.5
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 5.0e-58 228.8 208 58.2
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 3.3e-57 226.1 256 53.9
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 3.3e-57 226.1 251 50.2
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 4.2e-57 225.7 203 59.6
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 4.2e-57 225.7 272 49.3
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 5.5e-57 225.3 239 51.5
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 9.5e-57 224.6 199 58.8
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 2.8e-56 223.0 240 50.4
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 4.7e-56 222.2 257 49.4
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 8.0e-56 221.5 250 48.8
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 1.0e-55 221.1 240 50.4
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 1.4e-55 220.7 196 58.7
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 1.4e-55 220.7 238 50.4
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 1.8e-55 220.3 212 55.2
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 2.3e-55 219.9 214 54.7
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 3.0e-55 219.5 271 48.0
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 3.0e-55 219.5 205 55.6
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 5.2e-55 218.8 271 48.3
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 5.2e-55 218.8 258 48.8
CiPaw.08G084800 Carya illinoinensis HOM05D004068 ORTHO05D004700 8.9e-55 218.0 208 55.8
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 1.2e-54 217.6 205 55.6
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 5.7e-54 215.3 197 57.9
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 7.5e-54 214.9 206 55.8
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 2.2e-53 213.4 222 51.8
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 2.2e-53 213.4 217 50.7
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 4.9e-53 212.2 225 52.9
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 1.4e-52 210.7 219 52.5
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 5.4e-52 208.8 207 55.1
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 7.0e-52 208.4 237 47.7
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 9.2e-52 208.0 193 55.4
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 2.7e-51 206.5 259 43.6
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 4.5e-51 205.7 235 51.5
Duzib211G0484 Durio zibethinus HOM05D004068 ORTHO05D004700 1.3e-50 204.1 232 50.4
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 1.7e-50 203.8 282 45.0
Lj1A11T70 Lonicera japonica HOM05D004068 ORTHO05D004700 3.8e-50 202.6 263 48.3
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 6.6e-50 201.8 258 45.3
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 3.3e-49 199.5 238 47.9
Gohir.A11G106800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 2.3e-47 193.4 125 74.4
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 5.8e-46 188.7 239 42.7
Hund09678 Selenicereus undatus HOM05D004068 ORTHO05D004700 5.8e-46 188.7 185 54.6
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 1.7e-45 187.2 208 47.1
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 3.7e-45 186.0 259 42.1
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 4.9e-45 185.7 236 43.6
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 4.9e-45 185.7 236 43.6
Cpa.g.sc67.88 Carica papaya HOM05D004068 ORTHO05D004700 8.3e-45 184.9 208 50.0
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 1.1e-44 184.5 249 41.0
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 1.4e-44 184.1 249 44.6
SEGI_19128 Sequoiadendron giganteum HOM05D004068 ORTHO05D004700 1.4e-44 184.1 202 47.0
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 4.1e-44 182.6 206 47.6
DCAR_018255 Daucus carota HOM05D004068 ORTHO05D004700 4.1e-44 182.6 171 55.0
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 1.6e-43 180.6 272 40.8
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 4.6e-43 179.1 243 42.0
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 1.3e-42 177.6 226 46.0
Sc17g0000200 Simmondsia chinensis HOM05D004068 ORTHO05D004700 2.3e-42 176.8 228 44.7
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 1.6e-40 170.6 268 38.4
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 1.4e-39 167.5 212 42.0
BcaC07g42396 Brassica carinata HOM05D004068 ORTHO05D004700 1.4e-39 167.5 191 48.7
Sabra02G0165200 Salix brachista HOM05D004068 ORTHO05D004700 3.1e-39 166.4 249 44.2
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 4.0e-39 166.0 212 41.0
CSS0047755 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 6.8e-39 165.2 103 74.8
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 8.9e-39 164.9 201 42.8
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 2.6e-38 163.3 270 37.4
Mapoly0066s0015 Marchantia polymorpha HOM05D004068 ORTHO05D004700 3.4e-38 162.9 202 42.1
CSS0031477 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 7.5e-38 161.8 103 72.8
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 1.3e-37 161.0 276 36.6
CARHR001790 Cardamine hirsuta HOM05D004068 ORTHO05D004700 6.4e-37 158.7 212 39.2
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 6.4e-37 158.7 268 39.6
Pp3c26_7940 Physcomitrium patens HOM05D004068 ORTHO05D004700 2.4e-36 156.8 216 39.4
Sp1g01540 Schrenkiella parvula HOM05D004068 ORTHO05D004700 2.4e-36 156.8 199 40.7
Thhalv10008621m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 3.2e-36 156.4 199 40.7
Psat6g159440 Pisum sativum HOM05D004068 ORTHO05D004700 3.2e-36 156.4 142 58.5
HPP92_015252 Vanilla planifolia HOM05D004068 ORTHO05D004700 3.2e-36 156.4 161 51.6
Ca_10252_v3 Cicer arietinum L. HOM05D004068 ORTHO05D004700 7.0e-36 155.2 158 50.6
Lj5g0018153 Lotus japonicus HOM05D004068 ORTHO05D004700 9.2e-36 154.8 120 64.2
Phvul.007G211200 Phaseolus vulgaris HOM05D004068 ORTHO05D004700 1.6e-35 154.1 151 55.6
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 6.0e-35 152.1 235 37.4
AagrBONN_evm.TU.Sc2ySwM_228.3301 Anthoceros agrestis HOM05D004068 ORTHO05D004700 1.3e-34 151.0 197 40.1
BcaC07g42395 Brassica carinata HOM05D004068 ORTHO05D004700 2.3e-34 150.2 199 38.7
BolC8t52840H Brassica oleracea HOM05D004068 ORTHO05D004700 2.3e-34 150.2 199 38.7
CARHR249850 Cardamine hirsuta HOM05D004068 ORTHO05D004700 3.0e-34 149.8 121 56.2
A09p68650 Brassica napus HOM05D004068 ORTHO05D004700 5.1e-34 149.1 199 38.2
BraA09t42208Z Brassica rapa HOM05D004068 ORTHO05D004700 5.1e-34 149.1 199 38.2
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 6.6e-34 148.7 277 36.8
A10p01260 Brassica napus HOM05D004068 ORTHO05D004700 3.3e-33 146.4 199 38.2
BraA10t42404Z Brassica rapa HOM05D004068 ORTHO05D004700 3.3e-33 146.4 199 38.2
arahy.Tifrunner.gnm1.ann1.20WW32 Arachis hypogaea HOM05D004068 ORTHO05D004700 5.6e-33 145.6 120 62.5
C05p01260 Brassica napus HOM05D004068 ORTHO05D004700 5.6e-33 145.6 199 38.2
Pp3c9_13510 Physcomitrium patens HOM05D004068 ORTHO05D004700 7.3e-33 145.2 197 37.6
arahy.Tifrunner.gnm1.ann1.G5UTBZ Arachis hypogaea HOM05D004068 ORTHO05D004700 2.1e-32 143.7 146 53.4
SMO134G0067 Selaginella moellendorffii HOM05D004068 ORTHO05D004700 1.8e-31 140.6 190 39.5
Ah.02g112620 Amaranthus hybridus HOM05D004068 ORTHO05D004700 1.0e-26 124.8 204 40.7
C08p53250 Brassica napus HOM05D004068 ORTHO05D004700 1.0e-26 124.8 175 36.6
TPR.G3089 Trifolium pratense HOM05D004068 ORTHO05D004700 2.3e-26 123.6 163 44.8
Dinv12104 Davidia involucrata HOM05D004068 ORTHO05D004700 1.1e-25 121.3 64 87.5
Cre14.g616250 Chlamydomonas reinhardtii HOM05D004068 ORTHO05D004700 1.5e-25 120.9 205 33.2
CBR_g29411 Chara braunii HOM05D004068 ORTHO05D004700 1.2e-24 117.9 173 34.7
BraA09t35801Z Brassica rapa HOM05D004068 ORTHO05D004700 2.8e-24 116.7 166 42.2
vmacro09333 Vaccinium macrocarpon HOM05D004068 ORTHO05D004700 4.7e-24 115.9 65 83.1
MCO03G258 Micromonas commoda HOM05D004068 ORTHO05D004700 3.8e-21 106.3 194 30.9
CAN.G257.121 Capsicum annuum HOM05D004068 ORTHO05D004700 1.4e-20 104.4 91 58.2
TPR.G3034 Trifolium pratense HOM05D004068 ORTHO05D004700 1.9e-17 94.0 57 78.9
PRCOL_00002997 Prasinoderma coloniale HOM05D004068 ORTHO05D004700 9.6e-17 91.7 193 30.1
Aa31LG5G1470 Aethionema arabicum HOM05D004068 ORTHO05D004700 1.8e-15 87.4 103 45.6
Oeu052569.2 Olea europaea HOM05D004068 ORTHO05D004700 9.0e-15 85.1 52 75.0
A09p01340 Brassica napus HOM05D004068 ORTHO05D004700 2.7e-11 73.6 89 43.8
Os01g0328600 Oryza sativa ssp. japonica HOM05D004068 ORTHO05D004700 3.5e-11 73.2 77 48.1
Oeu044746.1 Olea europaea HOM05D004068 ORTHO05D004700 4.6e-11 72.8 49 69.4
Glyma.19G225300 Glycine max HOM05D004068 ORTHO05D004700 1.0e-10 71.6 85 48.2
A02p42700 Brassica napus HOM05D004068 ORTHO05D004700 7.3e-09 65.5 45 55.6
C02p62690 Brassica napus HOM05D004068 ORTHO05D004700 7.3e-09 65.5 45 55.6
BcaC03g18203 Brassica carinata HOM05D004068 ORTHO05D004700 2.1e-08 63.9 105 35.2
CSS0034791 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 1.1e-07 61.6 62 56.5
CSS0043421 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 1.1e-07 61.6 62 56.5


User provided reference genes

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