Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G0960 Fragaria x ananassa HOM05D001739 ORTHO05D025407 2.4e-187 658.7 338 100.0
FvH4_1g08660 Fragaria vesca HOM05D001739 ORTHO05D025407 4.3e-184 647.9 337 98.5
FAN23G1058 Fragaria x ananassa HOM05D001739 ORTHO05D025407 1.0e-169 600.1 338 91.7
FAN26G3315 Fragaria x ananassa HOM05D001739 ORTHO05D025407 3.4e-157 558.5 337 85.5
FvH4_1g08670 Fragaria vesca HOM05D001739 ORTHO05D025407 6.8e-137 491.1 338 78.7
RcHm_v2.0_Chr2g0095131 Rosa chinensis HOM05D001739 ORTHO05D015654 1.6e-85 320.5 335 55.5
RcHm_v2.0_Chr2g0095061 Rosa chinensis HOM05D001739 ORTHO05D029616 1.5e-83 313.9 351 51.6
RcHm_v2.0_Chr2g0094991 Rosa chinensis HOM05D001739 ORTHO05D029616 1.9e-83 313.5 351 51.3
FAN26G1945 Fragaria x ananassa HOM05D001739 ORTHO05D035581 1.9e-78 297.0 337 52.2
FAN10G4203 Fragaria x ananassa HOM05D001739 ORTHO05D029616 6.9e-73 278.5 348 48.6
FAN26G0106 Fragaria x ananassa HOM05D001739 ORTHO05D015654 2.1e-66 256.9 339 47.8
FAN19G1672 Fragaria x ananassa HOM05D001739 ORTHO05D015654 8.2e-66 255.0 339 48.1
FvH4_1g08730 Fragaria vesca HOM05D001739 ORTHO05D015654 2.4e-65 253.4 339 47.2
FvH4_1g08691 Fragaria vesca HOM05D001739 ORTHO05D015654 1.3e-63 247.7 334 46.4
FAN19G2992 Fragaria x ananassa HOM05D001739 ORTHO05D015654 4.9e-63 245.7 335 45.7
FvH4_1g08750 Fragaria vesca HOM05D001739 ORTHO05D015654 1.1e-62 244.6 334 45.2
FAN26G3321 Fragaria x ananassa HOM05D001739 ORTHO05D015654 2.5e-62 243.4 333 46.5
FAN26G3373 Fragaria x ananassa HOM05D001739 ORTHO05D015654 2.4e-57 226.9 337 44.5
RcHm_v2.0_Chr2g0095731 Rosa chinensis HOM05D001739 ORTHO05D004575 8.7e-52 208.4 337 41.2
MD15G1221900 Malus domestica HOM05D001739 ORTHO05D004575 1.1e-51 208.0 330 41.8
Prupe.7G193800 Prunus persica HOM05D001739 ORTHO05D004575 1.1e-51 208.0 331 42.6
FAN23G1590 Fragaria x ananassa HOM05D001739 ORTHO05D004575 4.8e-50 202.6 337 40.4
FvH4_1g09210 Fragaria vesca HOM05D001739 ORTHO05D004575 6.3e-50 202.2 337 40.1
FAN26G0091 Fragaria x ananassa HOM05D001739 ORTHO05D004575 8.2e-50 201.8 337 40.1
Prupe.6G204500 Prunus persica HOM05D001739 ORTHO05D004575 1.4e-49 201.1 331 41.4
FAN19G0975 Fragaria x ananassa HOM05D001739 ORTHO05D004575 1.8e-49 200.7 337 40.1
FAN26G1120 Fragaria x ananassa HOM05D001739 ORTHO05D004575 1.8e-49 200.7 337 40.1
vmacro17113 Vaccinium macrocarpon HOM05D001739 ORTHO05D004575 1.5e-48 197.6 332 38.6
Rhsim05G0003800 Rhododendron simsii HOM05D001739 ORTHO05D004575 3.4e-48 196.4 338 39.3
TWI32G0648 Tripterygium wilfordii HOM05D001739 ORTHO05D004575 8.5e-47 191.8 338 37.3
Atru.chr7.1752 Acer truncatum HOM05D001739 ORTHO05D004575 1.1e-46 191.4 341 37.2
Ciclev10023308m.g Citrus clementina HOM05D001739 ORTHO05D004575 1.4e-46 191.0 342 37.4
Hma1.2p1_0169F.1_g074380 Hydrangea macrophylla HOM05D001739 ORTHO05D004575 5.5e-46 189.1 323 39.3
COL.COLO4_21223 Corchorus olitorius HOM05D001739 ORTHO05D004575 1.2e-45 188.0 341 37.5
MD02G1099100 Malus domestica HOM05D001739 ORTHO05D004575 1.2e-45 188.0 301 42.2
Dinv25520 Davidia involucrata HOM05D001739 ORTHO05D004575 2.7e-45 186.8 323 37.2
Lj7C690T11 Lonicera japonica HOM05D001739 ORTHO05D004575 3.6e-45 186.4 323 38.4
vmacro17095 Vaccinium macrocarpon HOM05D001739 ORTHO05D004575 1.0e-44 184.9 330 37.0
vmacro23084 Vaccinium macrocarpon HOM05D001739 ORTHO05D004575 1.0e-44 184.9 330 37.0
FAN28G0236 Fragaria x ananassa HOM05D001739 ORTHO05D004575 2.3e-44 183.7 370 37.3
Gohir.A07G016500 Gossypium hirsutum HOM05D001739 ORTHO05D004575 3.9e-44 183.0 341 36.7
Gohir.D07G016300 Gossypium hirsutum HOM05D001739 ORTHO05D004575 3.9e-44 183.0 341 37.0
Sopen07g021980 Solanum pennellii HOM05D001739 ORTHO05D004575 5.1e-44 182.6 328 37.5
Gorai.001G017100 Gossypium raimondii HOM05D001739 ORTHO05D004575 8.8e-44 181.8 341 36.7
GSVIVG01023097001 Vitis vinifera HOM05D001739 ORTHO05D004575 8.8e-44 181.8 299 38.8
FvH4_1g13610 Fragaria vesca HOM05D001739 ORTHO05D004575 1.1e-43 181.4 351 41.0
FvH4_1g13570 Fragaria vesca HOM05D001739 ORTHO05D004575 1.5e-43 181.0 351 40.7
FAN19G0770 Fragaria x ananassa HOM05D001739 ORTHO05D004575 2.6e-43 180.3 351 41.0
Lsat_1_v5_gn_7_35381 Lactuca sativa HOM05D001739 ORTHO05D004575 4.4e-43 179.5 334 35.6
Glyma.17G046900 Glycine max HOM05D001739 ORTHO05D004575 5.7e-43 179.1 344 37.2
Manes.16G091500 Manihot esculenta HOM05D001739 ORTHO05D004575 5.7e-43 179.1 324 37.3
Cpa.g.sc32.6 Carica papaya HOM05D001739 ORTHO05D004575 9.7e-43 178.3 326 39.0
Glyma.13G112900 Glycine max HOM05D001739 ORTHO05D004575 9.7e-43 178.3 343 37.9
Lj4g0016027 Lotus japonicus HOM05D001739 ORTHO05D004575 9.7e-43 178.3 332 37.3
arahy.Tifrunner.gnm1.ann1.9HZQ4R Arachis hypogaea HOM05D001739 ORTHO05D004575 1.7e-42 177.6 344 36.3
arahy.Tifrunner.gnm1.ann1.SDZ4E8 Arachis hypogaea HOM05D001739 ORTHO05D004575 1.7e-42 177.6 344 35.8
Thecc.09G071800 Theobroma cacao HOM05D001739 ORTHO05D004575 2.8e-42 176.8 340 37.4
Cfa002954 Carpinus fangiana HOM05D001739 ORTHO05D004575 3.7e-42 176.4 333 37.8
ClCG03G014800 Citrullus lanatus HOM05D001739 ORTHO05D004575 4.8e-42 176.0 323 36.8
Nitab4.5_0007773g0020 Nicotiana tabacum HOM05D001739 ORTHO05D004575 3.1e-41 173.3 330 36.7
Potri.006G137900 Populus trichocarpa HOM05D001739 ORTHO05D004575 5.3e-41 172.6 326 36.5
Sabra18G0055900 Salix brachista HOM05D001739 ORTHO05D004575 5.3e-41 172.6 324 36.4
CsaV3_1G041350 Cucumis sativus L. HOM05D001739 ORTHO05D004575 6.9e-41 172.2 340 35.3
VMungo1215G0229 Vigna mungo HOM05D001739 ORTHO05D004575 6.9e-41 172.2 335 36.4
Ca_09790_v3 Cicer arietinum L. HOM05D001739 ORTHO05D004575 1.5e-40 171.0 325 38.5
HanXRQChr09g0273551 Helianthus annuus HOM05D001739 ORTHO05D004575 1.5e-40 171.0 330 34.5
Prupe.7G186700 Prunus persica HOM05D001739 ORTHO05D004575 1.5e-40 171.0 339 36.6
Lalb_Chr12g0200311 Lupinus albus HOM05D001739 ORTHO05D004575 2.0e-40 170.6 324 40.1
QL11p002157 Quercus lobata HOM05D001739 ORTHO05D004575 3.4e-40 169.9 346 35.3
Duzib168G0208 Durio zibethinus HOM05D001739 ORTHO05D004575 4.5e-40 169.5 333 36.0
AUR62039592 Chenopodium quinoa HOM05D001739 ORTHO05D004575 5.9e-40 169.1 327 34.9
MSTRG.5982 Avicennia marina HOM05D001739 ORTHO05D004575 1.0e-39 168.3 333 35.7
Haze_26051 Corylus avellana HOM05D001739 ORTHO05D004575 1.0e-39 168.3 333 36.3
TAR383G0739 Trochodendron aralioides HOM05D001739 ORTHO05D004575 1.3e-39 167.9 320 33.4
CAN.G63.12 Capsicum annuum HOM05D001739 ORTHO05D004575 1.7e-39 167.5 328 35.7
SGA_v2.0_scaffold281G46906 Striga asiatica HOM05D001739 ORTHO05D004575 1.7e-39 167.5 329 36.5
arahy.Tifrunner.gnm1.ann1.7457H2 Arachis hypogaea HOM05D001739 ORTHO05D004575 2.2e-39 167.2 341 35.5
Lalb_Chr13g0299281 Lupinus albus HOM05D001739 ORTHO05D004575 2.2e-39 167.2 324 39.2
AUR62019633 Chenopodium quinoa HOM05D001739 ORTHO05D004575 2.9e-39 166.8 327 34.6
MELO3C015548.2 Cucumis melo HOM05D001739 ORTHO05D004575 2.9e-39 166.8 340 34.7
Phvul.003G128600 Phaseolus vulgaris HOM05D001739 ORTHO05D004575 3.8e-39 166.4 335 36.1
CSS0017458 Camellia sinensis var. sinensis HOM05D001739 ORTHO05D004575 8.5e-39 165.2 337 37.1
arahy.Tifrunner.gnm1.ann1.WW7XLJ Arachis hypogaea HOM05D001739 ORTHO05D004575 1.1e-38 164.9 341 35.2
CANSAT56G3462 Cannabis sativa HOM05D001739 ORTHO05D004575 1.4e-38 164.5 344 34.6
EL10Ac8g19018 Beta vulgaris HOM05D001739 ORTHO05D004575 5.5e-38 162.5 328 33.2
Cc06_g12580 Coffea canephora HOM05D001739 ORTHO05D004575 5.5e-38 162.5 333 36.3
CiPaw.03G202600 Carya illinoinensis HOM05D001739 ORTHO05D004575 1.2e-37 161.4 325 36.6
SHI02768 Sapria himalayana HOM05D001739 ORTHO05D004575 2.1e-37 160.6 324 34.3
PGR142G3865 Punica granatum HOM05D001739 ORTHO05D004575 2.7e-37 160.2 342 35.1
Medtr1g072890 Medicago truncatula HOM05D001739 ORTHO05D004575 3.6e-37 159.8 344 36.6
Medtr1g072970 Medicago truncatula HOM05D001739 ORTHO05D004575 6.1e-37 159.1 357 35.6
DCAR_005064 Daucus carota HOM05D001739 ORTHO05D004575 1.0e-36 158.3 340 32.9
Nn8g40294 Nelumbo nucifera HOM05D001739 ORTHO05D004575 1.0e-36 158.3 336 33.9
HanXRQChr04g0122371 Helianthus annuus HOM05D001739 ORTHO05D004575 1.8e-36 157.5 330 35.2
FAN26G0455 Fragaria x ananassa HOM05D001739 ORTHO05D004575 6.7e-36 155.6 348 38.2
Nitab4.5_0001565g0110 Nicotiana tabacum HOM05D001739 ORTHO05D004575 2.0e-35 154.1 381 32.3
Sed0021617 Sechium edule HOM05D001739 ORTHO05D004575 2.0e-35 154.1 325 34.8
Sc24g0001530 Simmondsia chinensis HOM05D001739 ORTHO05D004575 2.0e-35 154.1 336 35.4
Sed0004150 Sechium edule HOM05D001739 ORTHO05D004575 1.7e-34 151.0 325 32.3
FvH4_5g05990 Fragaria vesca HOM05D001739 ORTHO05D029422 6.3e-34 149.1 341 37.0
Solyc07g042380.4 Solanum lycopersicum HOM05D001739 ORTHO05D004575 6.3e-34 149.1 323 33.7
Sp4g16630 Schrenkiella parvula HOM05D001739 ORTHO05D004575 8.2e-34 148.7 328 33.5
AUR62028280 Chenopodium quinoa HOM05D001739 ORTHO05D004575 1.4e-33 147.9 336 31.8
ECA240G3214 Erigeron canadensis HOM05D001739 ORTHO05D004575 1.8e-33 147.5 334 33.8
Ah.09g229240 Amaranthus hybridus HOM05D001739 ORTHO05D004575 2.4e-33 147.1 333 30.6
THA.LOC104809049 Tarenaya hassleriana HOM05D001739 ORTHO05D004575 2.4e-33 147.1 328 31.4
Psat6g134600 Pisum sativum HOM05D001739 ORTHO05D004575 4.1e-33 146.4 334 34.7
FAN19G1997 Fragaria x ananassa HOM05D001739 ORTHO05D015654 7.0e-33 145.6 201 45.8
Aqoxy7G03292 Aquilegia oxysepala HOM05D001739 ORTHO05D004575 1.2e-32 144.8 327 32.4
HPP92_004359 Vanilla planifolia HOM05D001739 ORTHO05D004575 4.5e-32 142.9 332 33.1
BolC3t14614H Brassica oleracea HOM05D001739 ORTHO05D004575 7.7e-32 142.1 328 33.2
Psat7g002920 Pisum sativum HOM05D001739 ORTHO05D004575 7.7e-32 142.1 326 33.4
DCAR_003861 Daucus carota HOM05D001739 ORTHO05D004575 1.7e-31 141.0 263 35.0
BcaB02g09558 Brassica carinata HOM05D001739 ORTHO05D004575 2.2e-31 140.6 330 32.4
BraA03t11167Z Brassica rapa HOM05D001739 ORTHO05D004575 3.8e-31 139.8 328 32.6
Hund23253 Selenicereus undatus HOM05D001739 ORTHO05D004575 6.5e-31 139.0 340 30.9
BcaC01g05798 Brassica carinata HOM05D001739 ORTHO05D004575 8.5e-31 138.7 328 32.6
BcaB01g03896 Brassica carinata HOM05D001739 ORTHO05D004575 1.1e-30 138.3 328 32.0
A03p19100 Brassica napus HOM05D001739 ORTHO05D004575 1.1e-30 138.3 328 32.3
TPR.G18558 Trifolium pratense HOM05D001739 ORTHO05D004575 4.2e-30 136.3 325 33.8
C03p22320 Brassica napus HOM05D001739 ORTHO05D004575 7.2e-30 135.6 328 32.3
Thhalv10016153m.g Eutrema salsugineum HOM05D001739 ORTHO05D004575 9.4e-30 135.2 326 31.9
PSO104G0064 Papaver somniferum HOM05D001739 ORTHO05D004575 3.6e-29 133.3 339 31.9
BraA05t20081Z Brassica rapa HOM05D001739 ORTHO05D004575 4.7e-29 132.9 328 31.4
FvH4_5g06040 Fragaria vesca HOM05D001739 ORTHO05D029422 4.7e-29 132.9 342 33.9
A05p11320 Brassica napus HOM05D001739 ORTHO05D004575 1.4e-28 131.3 328 32.0
BcaC02g11500 Brassica carinata HOM05D001739 ORTHO05D004575 1.8e-28 131.0 328 31.7
C04p14660 Brassica napus HOM05D001739 ORTHO05D004575 1.8e-28 131.0 331 32.0
BolC4t23047H Brassica oleracea HOM05D001739 ORTHO05D004575 1.8e-28 131.0 331 32.0
AL4G30320 Arabidopsis lyrata HOM05D001739 ORTHO05D004575 2.3e-28 130.6 328 31.1
FAN08G1830 Fragaria x ananassa HOM05D001739 ORTHO05D004575 4.0e-28 129.8 341 34.9
PSO421G0331 Papaver somniferum HOM05D001739 ORTHO05D004575 4.0e-28 129.8 339 31.3
Peaxi162Scf00191g01112 Petunia axillaris HOM05D001739 ORTHO05D004575 5.2e-28 129.4 323 31.0
Carub.0004s1602 Capsella rubella HOM05D001739 ORTHO05D004575 2.6e-27 127.1 328 30.2
Aa31LG9G14080 Aethionema arabicum HOM05D001739 ORTHO05D004575 3.3e-27 126.7 328 31.7
AT2G34357 Arabidopsis thaliana HOM05D001739 ORTHO05D004575 3.3e-27 126.7 329 30.7
CDE12G0121 Ceratophyllum demersum HOM05D001739 ORTHO05D004575 3.3e-27 126.7 345 29.3
FAN18G0943 Fragaria x ananassa HOM05D001739 ORTHO05D029422 4.4e-27 126.3 338 34.6
CARHR128440 Cardamine hirsuta HOM05D001739 ORTHO05D004575 9.7e-27 125.2 329 31.0
FAN26G3327 Fragaria x ananassa HOM05D001739 ORTHO05D015654 9.7e-27 125.2 330 31.5
TPR.G13945 Trifolium pratense HOM05D001739 ORTHO05D004575 9.7e-27 125.2 325 30.8
SEGI_37036 Sequoiadendron giganteum HOM05D001739 ORTHO05D004575 4.1e-25 119.8 340 28.2
BcaC02g11606 Brassica carinata HOM05D001739 ORTHO05D004575 4.5e-24 116.3 329 29.8
C04p13350 Brassica napus HOM05D001739 ORTHO05D004575 4.5e-24 116.3 329 29.8
FAN26G0957 Fragaria x ananassa HOM05D001739 ORTHO05D015654 4.5e-24 116.3 102 56.9
ATR0681G226 Amborella trichopoda HOM05D001739 ORTHO05D004575 5.0e-23 112.8 307 28.7
unitig_744.g24652 Utricularia gibba HOM05D001739 ORTHO05D004575 4.2e-22 109.8 342 27.5
CAN.G333.15 Capsicum annuum HOM05D001739 ORTHO05D004575 2.3e-20 104.0 181 38.7
TPR.G34376 Trifolium pratense HOM05D001739 ORTHO05D004575 8.8e-20 102.1 199 37.2
SEGI_16086 Sequoiadendron giganteum HOM05D001739 ORTHO05D004575 3.4e-19 100.1 324 26.2
CDE04G0230 Ceratophyllum demersum HOM05D001739 ORTHO05D004575 5.4e-17 92.8 176 34.7
MD02G1098900 Malus domestica HOM05D001739 ORTHO05D004575 7.0e-17 92.4 163 38.0
Os02g0782100 Oryza sativa ssp. japonica HOM05D001739 ORTHO05D004575 9.1e-17 92.0 217 30.9
Pp3c2_3190 Physcomitrium patens HOM05D001739 ORTHO05D004575 1.6e-16 91.3 334 25.1
Rhsim13G0126900 Rhododendron simsii HOM05D001739 ORTHO05D004575 6.5e-15 85.9 132 40.9
Zm00001eb257110 Zea mays HOM05D001739 ORTHO05D004575 8.6e-15 85.5 191 33.0
FAN18G1935 Fragaria x ananassa HOM05D001739 ORTHO05D029422 1.1e-14 85.1 265 30.9
BcaNung01063 Brassica carinata HOM05D001739 ORTHO05D006605 6.8e-12 75.9 344 24.7
CDE12G0742 Ceratophyllum demersum HOM05D001739 ORTHO05D004575 2.6e-11 73.9 116 38.8
AT4G23540 Arabidopsis thaliana HOM05D001739 ORTHO05D006605 9.8e-11 72.0 347 23.9
AL7G29870 Arabidopsis lyrata HOM05D001739 ORTHO05D006605 2.2e-10 70.9 352 25.0
TPR.G10174 Trifolium pratense HOM05D001739 ORTHO05D004575 2.2e-10 70.9 242 28.1
Migut.J00896 Erythranthe guttata HOM05D001739 ORTHO05D004575 3.7e-10 70.1 150 34.0
BraA01t01423Z Brassica rapa HOM05D001739 ORTHO05D006605 2.0e-08 64.3 345 24.1
Carub.0007s1775 Capsella rubella HOM05D001739 ORTHO05D006605 2.0e-08 64.3 354 22.9
A01p14820 Brassica napus HOM05D001739 ORTHO05D006605 4.5e-08 63.2 345 23.8
Sc18g0003470 Simmondsia chinensis HOM05D001739 ORTHO05D004575 7.8e-08 62.4 78 42.3
EL10Ac8g19019 Beta vulgaris HOM05D001739 ORTHO05D010736 2.3e-07 60.8 144 27.1
CARHR230910 Cardamine hirsuta HOM05D001739 ORTHO05D006605 3.8e-07 60.1 349 23.8
Thhalv10024271m.g Eutrema salsugineum HOM05D001739 ORTHO05D006605 3.8e-07 60.1 347 22.2
FvH4_6g18960 Fragaria vesca HOM05D001739 ORTHO05D035276 6.6e-07 59.3 154 32.5
BcaC09g50980 Brassica carinata HOM05D001739 ORTHO05D006605 1.1e-06 58.5 346 23.7
C01p18510 Brassica napus HOM05D001739 ORTHO05D006605 1.1e-06 58.5 346 23.7
BolC1t01774H Brassica oleracea HOM05D001739 ORTHO05D006605 1.1e-06 58.5 346 23.7
TPR.G10190 Trifolium pratense HOM05D001739 ORTHO05D004575 1.1e-06 58.5 186 26.9


User provided reference genes

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