Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G0791 Fragaria x ananassa HOM05D007491 ORTHO05D009489 1.9e-44 182.2 96 100.0
FvH4_1g04361 Fragaria vesca HOM05D007491 ORTHO05D009489 5.5e-44 180.6 96 99.0
FAN23G1386 Fragaria x ananassa HOM05D007491 ORTHO05D009489 3.7e-40 167.9 96 93.8
FAN26G2745 Fragaria x ananassa HOM05D001691 ORTHO05D001704 1.6e-38 162.5 89 95.5
RcHm_v2.0_Chr2g0090011 Rosa chinensis HOM05D007491 ORTHO05D009489 9.2e-31 136.7 100 82.0
Prupe.7G233600 Prunus persica HOM05D007491 ORTHO05D009489 4.1e-23 111.3 100 68.0
CSS0038485 Camellia sinensis var. sinensis HOM05D007491 ORTHO05D009489 7.1e-23 110.5 101 63.4
MD15G1182000 Malus domestica HOM05D007491 ORTHO05D009489 1.9e-20 102.4 101 65.3
Potri.018G082800 Populus trichocarpa HOM05D007491 ORTHO05D009489 9.5e-20 100.1 102 63.7
MD02G1043400 Malus domestica HOM05D007491 ORTHO05D009489 2.8e-19 98.6 100 65.0
THA.LOC104822629 Tarenaya hassleriana HOM05D007491 ORTHO05D009489 1.1e-18 96.7 99 61.6
PGR102G1855 Punica granatum HOM05D007491 ORTHO05D009489 1.4e-18 96.3 97 62.9
CANSAT78G0421 Cannabis sativa HOM05D007491 ORTHO05D009489 4.4e-17 91.3 96 65.6
CiPaw.03G229400 Carya illinoinensis HOM05D007491 ORTHO05D009489 7.6e-17 90.5 99 55.6
Dinv41621 Davidia involucrata HOM05D007491 ORTHO05D009489 7.6e-17 90.5 93 61.3
Carub.0003s1318 Capsella rubella HOM05D007491 ORTHO05D009489 1.3e-16 89.7 98 58.2
Sed0000101 Sechium edule HOM05D007491 ORTHO05D009489 1.7e-16 89.4 100 60.0
CsaV3_2G002190 Cucumis sativus L. HOM05D007491 ORTHO05D009489 2.2e-16 89.0 100 59.0
Manes.03G022800 Manihot esculenta HOM05D007491 ORTHO05D009489 3.7e-16 88.2 91 60.4
GSVIVG01035656001 Vitis vinifera HOM05D007491 ORTHO05D009489 3.7e-16 88.2 99 54.5
TWI63G0394 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 8.3e-16 87.0 102 54.9
Nn2g11682 Nelumbo nucifera HOM05D007491 ORTHO05D009489 1.1e-15 86.7 99 57.6
Phvul.002G312200 Phaseolus vulgaris HOM05D007491 ORTHO05D009489 1.1e-15 86.7 96 55.2
Glyma.08G037500 Glycine max HOM05D007491 ORTHO05D009489 1.4e-15 86.3 96 57.3
Gohir.A07G005300 Gossypium hirsutum HOM05D007491 ORTHO05D009489 1.4e-15 86.3 92 60.9
TAR383G0584 Trochodendron aralioides HOM05D007491 ORTHO05D009489 1.4e-15 86.3 93 54.8
Ca_17329_v3 Cicer arietinum L. HOM05D007491 ORTHO05D009489 1.9e-15 85.9 96 56.2
Cc06_g09900 Coffea canephora HOM05D007491 ORTHO05D009489 1.9e-15 85.9 94 55.3
Rhsim01G0100500 Rhododendron simsii HOM05D007491 ORTHO05D009489 1.9e-15 85.9 94 55.3
Sabra18G0070600 Salix brachista HOM05D007491 ORTHO05D009489 2.4e-15 85.5 96 59.4
Eucgr.C03814 Eucalyptus grandis HOM05D007491 ORTHO05D009489 4.1e-15 84.7 100 62.0
Gohir.D07G006700 Gossypium hirsutum HOM05D007491 ORTHO05D009489 5.4e-15 84.3 93 58.1
AT1G55205 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 7.1e-15 84.0 100 56.0
TWI34G1809 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 7.1e-15 84.0 103 53.4
COL.COLO4_18682 Corchorus olitorius HOM05D007491 ORTHO05D009489 9.2e-15 83.6 102 52.0
TPR.G23496 Trifolium pratense HOM05D007491 ORTHO05D009489 9.2e-15 83.6 93 57.0
Lalb_Chr16g0388121 Lupinus albus HOM05D007491 ORTHO05D009489 1.2e-14 83.2 98 57.1
Thhalv10021835m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 1.6e-14 82.8 98 54.1
Thecc.09G041400 Theobroma cacao HOM05D007491 ORTHO05D009489 1.6e-14 82.8 101 51.5
Lsat_1_v5_gn_5_103040 Lactuca sativa HOM05D007491 ORTHO05D009489 2.1e-14 82.4 102 54.9
Lalb_Chr05g0222981 Lupinus albus HOM05D007491 ORTHO05D009489 2.1e-14 82.4 96 56.2
Thecc.09G107500 Theobroma cacao HOM05D007491 ORTHO05D009489 2.1e-14 82.4 93 59.1
CARHR088390 Cardamine hirsuta HOM05D007491 ORTHO05D009489 2.7e-14 82.0 105 51.4
Duzib150G1582 Durio zibethinus HOM05D007491 ORTHO05D009489 2.7e-14 82.0 101 54.5
Duzib187G0523 Durio zibethinus HOM05D007491 ORTHO05D009489 2.7e-14 82.0 101 52.5
CARHR044840 Cardamine hirsuta HOM05D007491 ORTHO05D009489 3.5e-14 81.6 94 57.4
Sed0025893 Sechium edule HOM05D007491 ORTHO05D009489 3.5e-14 81.6 103 56.3
TWI32G0642 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 4.6e-14 81.3 103 52.4
VMungo0251G1641 Vigna mungo HOM05D007491 ORTHO05D009489 4.6e-14 81.3 89 55.1
Carub.0001s4372 Capsella rubella HOM05D007491 ORTHO05D009489 7.8e-14 80.5 103 55.3
Glyma.05G230000 Glycine max HOM05D007491 ORTHO05D009489 7.8e-14 80.5 88 56.8
Manes.16G071301 Manihot esculenta HOM05D007491 ORTHO05D009489 7.8e-14 80.5 101 51.5
Gohir.D06G094200 Gossypium hirsutum HOM05D007491 ORTHO05D009489 1.0e-13 80.1 106 51.9
Gorai.010G108700 Gossypium raimondii HOM05D007491 ORTHO05D009489 1.3e-13 79.7 106 54.7
Cfa003238 Carpinus fangiana HOM05D007491 ORTHO05D009489 1.7e-13 79.3 97 56.7
Haze_25768 Corylus avellana HOM05D007491 ORTHO05D009489 2.3e-13 79.0 96 56.2
Sp1g40890 Schrenkiella parvula HOM05D007491 ORTHO05D009489 2.3e-13 79.0 96 52.1
ClCG11G002390 Citrullus lanatus HOM05D007491 ORTHO05D009489 3.0e-13 78.6 94 55.3
AT3G13674 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 5.1e-13 77.8 99 51.5
ECA234G1405 Erigeron canadensis HOM05D007491 ORTHO05D009489 5.1e-13 77.8 97 52.6
Lj4g0004733 Lotus japonicus HOM05D007491 ORTHO05D009489 6.6e-13 77.4 55 70.9
AL1G63250 Arabidopsis lyrata HOM05D007491 ORTHO05D009489 8.6e-13 77.0 100 54.0
Gohir.A06G094700 Gossypium hirsutum HOM05D007491 ORTHO05D009489 8.6e-13 77.0 55 70.9
Oeu013426.2 Olea europaea HOM05D007491 ORTHO05D009489 1.1e-12 76.6 91 53.8
MELO3C004564.2 Cucumis melo HOM05D007491 ORTHO05D009489 1.5e-12 76.3 93 55.9
HanXRQChr12g0355021 Helianthus annuus HOM05D007491 ORTHO05D009489 2.5e-12 75.5 93 53.8
Psat7g015280 Pisum sativum HOM05D007491 ORTHO05D009489 2.5e-12 75.5 93 53.8
Ciclev10010011m.g Citrus clementina HOM05D007491 ORTHO05D009489 3.3e-12 75.1 103 54.4
Ciclev10010763m.g Citrus clementina HOM05D007491 ORTHO05D009489 7.3e-12 73.9 51 70.6
Thhalv10011893m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 9.6e-12 73.6 97 51.5
Nn3g18087 Nelumbo nucifera HOM05D007491 ORTHO05D009489 9.6e-12 73.6 92 51.1
CDE05G0808 Ceratophyllum demersum HOM05D007491 ORTHO05D009489 1.6e-11 72.8 91 48.4
Peaxi162Scf00231g00326 Petunia axillaris HOM05D007491 ORTHO05D009489 1.6e-11 72.8 93 49.5
CDE05G2495 Ceratophyllum demersum HOM05D001777 ORTHO05D001809 2.1e-11 72.4 93 47.3
HanXRQChr10g0318621 Helianthus annuus HOM05D007491 ORTHO05D009489 3.6e-11 71.6 97 55.7
Lj2g0023927 Lotus japonicus HOM05D007491 ORTHO05D009489 4.7e-11 71.2 96 53.1
Gorai.001G006300 Gossypium raimondii HOM05D007491 ORTHO05D009489 6.2e-11 70.9 93 54.8
Dinv36653 Davidia involucrata HOM05D007491 ORTHO05D009489 1.1e-10 70.1 93 54.8
Medtr8g103300 Medicago truncatula HOM05D007491 ORTHO05D009489 1.4e-10 69.7 89 50.6
BolC3t21548H Brassica oleracea HOM05D007491 ORTHO05D009489 4.0e-10 68.2 97 50.5
BcaC01g01475 Brassica carinata HOM05D007491 ORTHO05D009489 5.2e-10 67.8 97 50.5
C03p92400 Brassica napus HOM05D007491 ORTHO05D009489 5.2e-10 67.8 97 50.5
AUR62009312 Chenopodium quinoa HOM05D007491 ORTHO05D009489 6.8e-10 67.4 96 45.8
Hma1.2p1_1463F.1_g285180 Hydrangea macrophylla HOM05D007491 ORTHO05D009489 6.8e-10 67.4 93 45.2
A08p00850 Brassica napus HOM05D007491 ORTHO05D009489 8.9e-10 67.0 97 50.5
BraA08t32143Z Brassica rapa HOM05D007491 ORTHO05D009489 8.9e-10 67.0 97 50.5
C06p10160 Brassica napus HOM05D007491 ORTHO05D009489 3.4e-09 65.1 94 46.8
A06p00340 Brassica napus HOM05D007491 ORTHO05D009489 4.4e-09 64.7 94 46.8
BraA06t23249Z Brassica rapa HOM05D007491 ORTHO05D009489 4.4e-09 64.7 94 46.8
Lsat_1_v5_gn_5_33441 Lactuca sativa HOM05D007491 ORTHO05D009489 5.8e-09 64.3 82 47.6
MBI01_g30748_MAGBIO Magnolia biondii HOM05D007491 ORTHO05D009489 9.9e-09 63.5 50 66.0
BolC6t36089H Brassica oleracea HOM05D000490 ORTHO05D000785 1.7e-08 62.8 97 44.3
PSO782G0237 Papaver somniferum HOM05D007491 ORTHO05D009489 1.7e-08 62.8 89 52.8
arahy.Tifrunner.gnm1.ann1.KI7M62 Arachis hypogaea HOM05D007491 ORTHO05D009489 3.8e-08 61.6 88 48.9
Os02g0273900 Oryza sativa ssp. japonica HOM05D007491 ORTHO05D009489 3.8e-08 61.6 54 61.1
PSO541G0900 Papaver somniferum HOM05D006766 ORTHO05D008534 4.9e-08 61.2 68 48.5
PSO566G0269 Papaver somniferum HOM05D007491 ORTHO05D009489 4.9e-08 61.2 89 52.8
Haze_02383 Corylus avellana HOM05D001555 ORTHO05D001616 6.4e-08 60.8 57 57.9
Os06g0332500 Oryza sativa ssp. japonica HOM05D007491 ORTHO05D009489 6.4e-08 60.8 75 49.3
Ah.16g106040 Amaranthus hybridus HOM05D007491 ORTHO05D009489 8.4e-08 60.5 67 49.3
PSO144G0109 Papaver somniferum HOM05D006766 ORTHO05D008534 8.4e-08 60.5 61 50.8
PSO144G0117 Papaver somniferum HOM05D006766 ORTHO05D008534 8.4e-08 60.5 61 50.8
BcaB04g16984 Brassica carinata HOM05D007491 ORTHO05D009489 1.4e-07 59.7 90 48.9
Nn5g30294 Nelumbo nucifera HOM05D006766 ORTHO05D008534 2.4e-07 58.9 82 45.1
arahy.Tifrunner.gnm1.ann1.RT52KZ Arachis hypogaea HOM05D007491 ORTHO05D009489 3.2e-07 58.5 81 53.1
Sabra04G0102700 Salix brachista HOM05D006766 ORTHO05D008534 3.2e-07 58.5 74 44.6
vmacro02108 Vaccinium macrocarpon HOM05D006766 ORTHO05D008534 3.2e-07 58.5 70 51.4
Gohir.A12G028700 Gossypium hirsutum HOM05D006766 ORTHO05D008534 4.2e-07 58.2 80 47.5
Gohir.D12G028200 Gossypium hirsutum HOM05D006766 ORTHO05D008534 4.2e-07 58.2 80 47.5
EL10Ac6g13673 Beta vulgaris HOM05D007293 ORTHO05D009143 5.4e-07 57.8 83 41.0
Carub.0007s0121 Capsella rubella HOM05D006766 ORTHO05D008534 5.4e-07 57.8 50 58.0
Gorai.008G028800 Gossypium raimondii HOM05D006766 ORTHO05D008534 5.4e-07 57.8 79 46.8
AL7G11290 Arabidopsis lyrata HOM05D006766 ORTHO05D008534 9.3e-07 57.0 85 44.7
Atru.chr5.3014 Acer truncatum HOM05D006766 ORTHO05D008534 1.6e-06 56.2 66 50.0
Aqoxy5G01642 Aquilegia oxysepala HOM05D006766 ORTHO05D008534 1.6e-06 56.2 80 42.5
CARHR247400 Cardamine hirsuta HOM05D006766 ORTHO05D008534 1.6e-06 56.2 90 41.1
MD10G1076400 Malus domestica HOM05D006766 ORTHO05D008534 1.6e-06 56.2 96 38.5
SHI47168 Sapria himalayana HOM05D007491 ORTHO05D009489 1.6e-06 56.2 102 44.1
Gohir.D02G215600 Gossypium hirsutum HOM05D006766 ORTHO05D008534 2.1e-06 55.8 93 47.3
Rhsim11G0177000 Rhododendron simsii HOM05D006766 ORTHO05D008534 2.1e-06 55.8 70 50.0
Hund19532 Selenicereus undatus HOM05D007491 ORTHO05D009489 2.1e-06 55.8 100 41.0
Sc04g0009130 Simmondsia chinensis HOM05D007293 ORTHO05D009143 2.1e-06 55.8 91 42.9
COL.COLO4_25930 Corchorus olitorius HOM05D006766 ORTHO05D008534 2.7e-06 55.5 93 45.2
MELO3C013933.2 Cucumis melo HOM05D006762 ORTHO05D003505 2.7e-06 55.5 93 39.8
PSO675G5258 Papaver somniferum HOM05D006766 ORTHO05D008534 2.7e-06 55.5 66 45.5
TAR625G1191 Trochodendron aralioides HOM05D006766 ORTHO05D008534 2.7e-06 55.5 78 39.7
vmacro21548 Vaccinium macrocarpon HOM05D006762 ORTHO05D003505 2.7e-06 55.5 90 40.0
ClCG10G002600 Citrullus lanatus HOM05D006762 ORTHO05D003505 3.5e-06 55.1 93 39.8
FvH4_2g08780 Fragaria vesca HOM05D006766 ORTHO05D008534 3.5e-06 55.1 82 41.5
HanXRQChr10g0307051 Helianthus annuus HOM05D006766 ORTHO05D008534 3.5e-06 55.1 78 46.2
Prupe.8G097200 Prunus persica HOM05D006766 ORTHO05D008534 3.5e-06 55.1 96 38.5
Cpa.g.sc62.150 Carica papaya HOM05D006766 ORTHO05D008534 4.6e-06 54.7 64 46.9
Cfa005004 Carpinus fangiana HOM05D006766 ORTHO05D008534 4.6e-06 54.7 79 46.8
PSO675G5014 Papaver somniferum HOM05D006766 ORTHO05D008534 4.6e-06 54.7 62 48.4
EL10Ac2g04054 Beta vulgaris HOM05D007491 ORTHO05D009489 6.0e-06 54.3 92 42.4
Sp7g36570 Schrenkiella parvula HOM05D006766 ORTHO05D008534 6.0e-06 54.3 85 43.5
Thecc.02G085300 Theobroma cacao HOM05D006766 ORTHO05D008534 6.0e-06 54.3 91 44.0
Ciclev10029674m.g Citrus clementina HOM05D006766 ORTHO05D008534 7.8e-06 53.9 81 46.9


User provided reference genes

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