Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G0764 Fragaria x ananassa HOM05D006182 ORTHO05D007236 9.7e-138 493.4 242 100.0
FAN19G3122 Fragaria x ananassa HOM05D006182 ORTHO05D007236 2.0e-119 432.6 215 100.0
FAN16G1533 Fragaria x ananassa HOM05D006182 ORTHO05D007236 4.5e-119 431.4 215 99.5
FAN17G1630 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.3e-118 429.9 215 99.1
FAN10G2690 Fragaria x ananassa HOM05D006182 ORTHO05D007236 3.9e-118 428.3 215 99.1
FAN08G0368 Fragaria x ananassa HOM05D006182 ORTHO05D007236 8.6e-118 427.2 215 99.1
FvH4_5g30300 Fragaria vesca HOM05D006182 ORTHO05D007236 1.8e-115 419.5 215 97.2
FAN18G2601 Fragaria x ananassa HOM05D006182 ORTHO05D007236 6.8e-115 417.5 215 96.7
RcHm_v2.0_Chr7g0224651 Rosa chinensis HOM05D006182 ORTHO05D007236 6.6e-102 374.4 217 85.7
Prupe.1G390200 Prunus persica HOM05D006182 ORTHO05D007236 1.1e-83 313.9 212 74.5
MD08G1060500 Malus domestica HOM05D006182 ORTHO05D007236 1.1e-77 293.9 213 67.1
Haze_17575 Corylus avellana HOM05D006182 ORTHO05D007236 2.9e-65 252.7 215 60.0
QL02p006174 Quercus lobata HOM05D006182 ORTHO05D007236 1.0e-62 244.2 211 57.8
CiPaw.15G064200 Carya illinoinensis HOM05D006182 ORTHO05D007236 4.5e-58 228.8 215 54.4
ClCG05G019560 Citrullus lanatus HOM05D006182 ORTHO05D007236 1.3e-57 227.3 217 53.0
Manes.05G170000 Manihot esculenta HOM05D006182 ORTHO05D007236 1.7e-57 226.9 207 55.1
Potri.002G129000 Populus trichocarpa HOM05D006182 ORTHO05D007236 1.7e-57 226.9 212 53.3
TWI56G0571 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 2.2e-57 226.5 206 53.4
Sed0017871 Sechium edule HOM05D006182 ORTHO05D007236 2.9e-57 226.1 216 53.7
CANSAT64G1322 Cannabis sativa HOM05D006182 ORTHO05D007236 1.1e-56 224.2 214 53.7
MELO3C032401.2 Cucumis melo HOM05D006182 ORTHO05D007236 7.2e-56 221.5 217 51.6
Cpa.g.c37201 Carica papaya HOM05D006182 ORTHO05D007236 9.3e-56 221.1 212 53.3
CsaV3_4G034020 Cucumis sativus L. HOM05D006182 ORTHO05D007236 9.3e-56 221.1 217 52.1
Actinidia22605 Actinidia chinensis HOM05D006182 ORTHO05D007236 2.1e-55 219.9 230 54.3
Sabra02G0101100 Salix brachista HOM05D006182 ORTHO05D007236 4.6e-55 218.8 206 52.9
Ciclev10003565m.g Citrus clementina HOM05D006182 ORTHO05D007236 1.3e-54 217.2 201 55.7
Duzib093G2194 Durio zibethinus HOM05D006182 ORTHO05D007236 3.9e-54 215.7 214 53.7
Dinv35991 Davidia involucrata HOM05D006182 ORTHO05D007236 6.7e-54 214.9 205 54.1
Hma1.2p1_0951F.1_g240770 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 8.7e-54 214.5 213 50.2
Thecc.08G014800 Theobroma cacao HOM05D006182 ORTHO05D007236 2.5e-53 213.0 195 57.4
Hma1.2p1_2764F.1_g328150 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 7.4e-53 211.5 211 49.8
vmacro21568 Vaccinium macrocarpon HOM05D006182 ORTHO05D007236 2.8e-52 209.5 233 51.1
Rhsim06G0045000 Rhododendron simsii HOM05D006182 ORTHO05D007236 3.7e-52 209.1 234 48.7
Cfa018501 Carpinus fangiana HOM05D006182 ORTHO05D007236 6.3e-52 208.4 211 52.6
PGR031G1311 Punica granatum HOM05D006182 ORTHO05D007236 6.9e-51 204.9 214 51.9
Atru.chr13.613 Acer truncatum HOM05D006182 ORTHO05D007236 7.7e-50 201.4 210 50.0
Nn6g32369 Nelumbo nucifera HOM05D006182 ORTHO05D007236 7.7e-50 201.4 218 50.5
Oeu032242.1 Olea europaea HOM05D006182 ORTHO05D007236 2.2e-49 199.9 208 48.6
CAN.G210.12 Capsicum annuum HOM05D006182 ORTHO05D007236 1.9e-48 196.8 206 48.1
arahy.Tifrunner.gnm1.ann1.903WAW Arachis hypogaea HOM05D006182 ORTHO05D007236 2.5e-48 196.4 211 50.7
arahy.Tifrunner.gnm1.ann1.I266YZ Arachis hypogaea HOM05D006182 ORTHO05D007236 7.2e-48 194.9 211 50.2
Nitab4.5_0003237g0020 Nicotiana tabacum HOM05D006182 ORTHO05D007236 9.4e-48 194.5 204 47.5
Lj4A50G37 Lonicera japonica HOM05D006182 ORTHO05D007236 1.2e-47 194.1 201 50.7
Peaxi162Scf00929g00711 Petunia axillaris HOM05D006182 ORTHO05D007236 1.6e-47 193.7 205 47.8
Nitab4.5_0001611g0150 Nicotiana tabacum HOM05D006182 ORTHO05D007236 1.0e-46 191.0 204 48.0
Lj3g0019378 Lotus japonicus HOM05D006182 ORTHO05D007236 1.4e-46 190.7 208 49.0
Phvul.011G175100 Phaseolus vulgaris HOM05D006182 ORTHO05D007236 1.8e-46 190.3 195 51.3
Cc00_g16120 Coffea canephora HOM05D006182 ORTHO05D007236 2.3e-46 189.9 202 49.0
Sc15g0006460 Simmondsia chinensis HOM05D006182 ORTHO05D007236 7.4e-45 184.9 233 42.5
SalBow7G1322 Salvia bowleyana HOM05D006182 ORTHO05D007236 1.7e-44 183.7 235 43.0
Migut.C00612 Erythranthe guttata HOM05D006182 ORTHO05D007236 2.4e-43 179.9 218 44.0
SGA_v2.0_scaffold217G42430 Striga asiatica HOM05D006182 ORTHO05D007236 2.4e-43 179.9 217 43.8
THA.LOC104816122 Tarenaya hassleriana HOM05D006182 ORTHO05D007236 2.4e-43 179.9 215 47.9
Hund17608 Selenicereus undatus HOM05D006182 ORTHO05D007236 3.1e-43 179.5 214 45.3
DCAR_012766 Daucus carota HOM05D006182 ORTHO05D007236 1.2e-42 177.6 210 47.6
Lalb_Chr04g0264231 Lupinus albus HOM05D006182 ORTHO05D007236 1.5e-42 177.2 214 46.7
MSTRG.25113 Avicennia marina HOM05D006182 ORTHO05D007236 2.6e-42 176.4 215 47.4
Psat4g135680 Pisum sativum HOM05D006182 ORTHO05D007236 4.5e-42 175.6 200 49.0
Sopen07g009980 Solanum pennellii HOM05D006182 ORTHO05D007236 4.5e-42 175.6 200 45.5
PGSC0003DMG400031482 Solanum tuberosum HOM05D006182 ORTHO05D007236 5.9e-42 175.3 204 46.1
Gorai.009G018100 Gossypium raimondii HOM05D006182 ORTHO05D007236 1.7e-41 173.7 196 50.0
Gohir.A05G016750 Gossypium hirsutum HOM05D006182 ORTHO05D007236 2.2e-41 173.3 196 50.0
Gohir.D05G017700 Gossypium hirsutum HOM05D006182 ORTHO05D007236 2.2e-41 173.3 196 50.0
TPR.G9412 Trifolium pratense HOM05D006182 ORTHO05D007236 3.8e-41 172.6 200 47.5
Sp6g07920 Schrenkiella parvula HOM05D006182 ORTHO05D007236 4.2e-40 169.1 204 48.0
Aqoxy2G01750 Aquilegia oxysepala HOM05D006182 ORTHO05D007236 5.5e-40 168.7 199 46.2
Aa31LG9G14980 Aethionema arabicum HOM05D006182 ORTHO05D007236 4.7e-39 165.6 203 46.3
PSO541G3468 Papaver somniferum HOM05D006182 ORTHO05D007236 1.0e-38 164.5 207 43.0
MBI16_g27588_MAGBIO Magnolia biondii HOM05D006182 ORTHO05D007236 1.8e-38 163.7 207 45.4
BraA09t38510Z Brassica rapa HOM05D006182 ORTHO05D007236 3.0e-38 162.9 211 45.5
A09p29430 Brassica napus HOM05D006182 ORTHO05D007236 5.1e-38 162.2 203 45.8
PSO675G0403 Papaver somniferum HOM05D006182 ORTHO05D007236 5.1e-38 162.2 211 43.1
AT4G09680 Arabidopsis thaliana HOM05D006182 ORTHO05D007236 8.8e-38 161.4 202 47.5
Solyc07g021120.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 2.0e-37 160.2 192 43.8
BcaC04g20947 Brassica carinata HOM05D006182 ORTHO05D007236 4.4e-37 159.1 202 46.0
C09p37620 Brassica napus HOM05D006182 ORTHO05D007236 4.4e-37 159.1 202 46.0
BolC9t56593H Brassica oleracea HOM05D006182 ORTHO05D007236 4.4e-37 159.1 202 46.0
AL6G43320 Arabidopsis lyrata HOM05D006182 ORTHO05D007236 9.7e-37 157.9 203 47.3
Carub.0006s2813 Capsella rubella HOM05D006182 ORTHO05D007236 3.7e-36 156.0 204 46.1
Eucgr.F02378 Eucalyptus grandis HOM05D006182 ORTHO05D007236 8.2e-36 154.8 155 49.0
AUR62031379 Chenopodium quinoa HOM05D006182 ORTHO05D007236 1.1e-35 154.5 215 39.5
EL10Ac1g01812 Beta vulgaris HOM05D006182 ORTHO05D007236 1.4e-35 154.1 207 42.5
BcaB01g01419 Brassica carinata HOM05D006182 ORTHO05D007236 1.8e-35 153.7 214 43.9
Lsat_1_v5_gn_4_124380 Lactuca sativa HOM05D006182 ORTHO05D007236 1.8e-35 153.7 212 40.6
ECA232G1194 Erigeron canadensis HOM05D006182 ORTHO05D007236 5.3e-35 152.1 210 39.0
Thhalv10029299m.g Eutrema salsugineum HOM05D006182 ORTHO05D007236 3.5e-34 149.4 203 43.3
unitig_8.g5014 Utricularia gibba HOM05D006182 ORTHO05D007236 3.8e-33 146.0 213 40.8
HanXRQChr09g0268131 Helianthus annuus HOM05D006182 ORTHO05D007236 1.1e-32 144.4 208 41.8
Ah.05g168900 Amaranthus hybridus HOM05D006182 ORTHO05D007236 1.5e-32 144.1 209 38.3
Solyc12g062480.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 3.0e-30 136.3 133 48.9
ATR0225G007 Amborella trichopoda HOM05D006182 ORTHO05D007236 8.2e-28 128.3 172 42.4
Os09g0376000 Oryza sativa ssp. japonica HOM05D006182 ORTHO05D007236 2.2e-25 120.2 205 39.0
CDE02G1449 Ceratophyllum demersum HOM05D006182 ORTHO05D007236 1.0e-22 111.3 163 36.8
Zm00001eb311480 Zea mays HOM05D006182 ORTHO05D007236 5.2e-22 109.0 206 35.0
TWI36G0305 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 3.4e-21 106.3 206 35.0
HPP92_010557 Vanilla planifolia HOM05D006182 ORTHO05D007236 1.3e-17 94.4 163 37.4
SMO356G0287 Selaginella moellendorffii HOM05D006182 ORTHO05D007236 1.2e-15 87.8 209 32.1
SEGI_31096 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 2.7e-10 70.1 250 26.4
Pp3c12_3560 Physcomitrium patens HOM05D006182 ORTHO05D007236 3.5e-10 69.7 233 26.6
Sopen12g025610 Solanum pennellii HOM05D006182 ORTHO05D007236 3.5e-10 69.7 51 60.8
Dinv00354 Davidia involucrata HOM05D006182 ORTHO05D007236 5.6e-08 62.4 37 78.4


User provided reference genes

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