Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G0716 Fragaria x ananassa HOM05D002291 ORTHO05D002496 2.4e-87 325.5 162 100.0
FAN26G1319 Fragaria x ananassa HOM05D002291 ORTHO05D002496 3.6e-80 301.6 164 90.9
FAN23G1691 Fragaria x ananassa HOM05D002291 ORTHO05D002496 8.1e-80 300.4 161 94.4
FAN28G2341 Fragaria x ananassa HOM05D000118 ORTHO05D000098 9.0e-71 270.4 144 95.1
FvH4_1g01610 Fragaria vesca HOM05D002291 ORTHO05D002496 1.2e-70 270.0 143 95.8
RcHm_v2.0_Chr2g0086561 Rosa chinensis HOM05D002291 ORTHO05D002496 2.5e-60 235.7 142 86.6
MD02G1012800 Malus domestica HOM05D002291 ORTHO05D002496 2.3e-34 149.4 173 58.4
MD15G1158600 Malus domestica HOM05D002291 ORTHO05D002496 2.2e-32 142.9 145 65.5
TWI34G1223 Tripterygium wilfordii HOM05D002291 ORTHO05D002496 1.8e-26 123.2 140 54.3
Prupe.7G253800 Prunus persica HOM05D002291 ORTHO05D002496 8.8e-26 120.9 86 72.1
Duzib187G0257 Durio zibethinus HOM05D002291 ORTHO05D002496 5.9e-22 108.2 105 60.0
Potri.018G113700 Populus trichocarpa HOM05D002291 ORTHO05D002496 2.2e-21 106.3 113 49.6
Potri.006G189600 Populus trichocarpa HOM05D002291 ORTHO05D002496 8.5e-21 104.4 114 49.1
Thecc.09G142300 Theobroma cacao HOM05D002291 ORTHO05D002496 1.1e-20 104.0 103 57.3
Phvul.009G209300 Phaseolus vulgaris HOM05D002291 ORTHO05D002496 1.9e-20 103.2 113 52.2
Sabra06G0145800 Salix brachista HOM05D002291 ORTHO05D002496 2.5e-20 102.8 124 48.4
Glyma.15G202600 Glycine max HOM05D002291 ORTHO05D002496 3.2e-20 102.4 114 53.5
Glyma.09G094900 Glycine max HOM05D002291 ORTHO05D002496 5.5e-20 101.7 99 59.6
QL02p091382 Quercus lobata HOM05D002291 ORTHO05D002496 5.5e-20 101.7 109 52.3
Manes.14G139400 Manihot esculenta HOM05D002291 ORTHO05D002496 1.2e-19 100.5 107 52.3
CiPaw.15G181200 Carya illinoinensis HOM05D002291 ORTHO05D002496 1.6e-19 100.1 113 53.1
Gohir.A06G049100 Gossypium hirsutum HOM05D002291 ORTHO05D002496 1.6e-19 100.1 103 53.4
Duzib150G1435 Durio zibethinus HOM05D002291 ORTHO05D002496 2.7e-19 99.4 104 54.8
Gohir.A13G203400 Gossypium hirsutum HOM05D002291 ORTHO05D002496 2.7e-19 99.4 112 52.7
Gohir.D06G048800 Gossypium hirsutum HOM05D002291 ORTHO05D002496 2.7e-19 99.4 103 53.4
Gohir.D13G208700 Gossypium hirsutum HOM05D002291 ORTHO05D002496 6.1e-19 98.2 112 51.8
Gorai.013G237800 Gossypium raimondii HOM05D002291 ORTHO05D002496 6.1e-19 98.2 112 51.8
Ca_13603_v3 Cicer arietinum L. HOM05D002291 ORTHO05D002496 1.4e-18 97.1 109 53.2
Ca_30444_v3 Cicer arietinum L. HOM05D002291 ORTHO05D002496 1.4e-18 97.1 109 53.2
Gorai.010G055000 Gossypium raimondii HOM05D002291 ORTHO05D002496 1.8e-18 96.7 103 52.4
Atru.chr7.219 Acer truncatum HOM05D002291 ORTHO05D002496 2.3e-18 96.3 98 58.2
CANSAT11G0551 Cannabis sativa HOM05D002291 ORTHO05D002496 3.0e-18 95.9 80 62.5
COL.COLO4_24089 Corchorus olitorius HOM05D002291 ORTHO05D002496 4.0e-18 95.5 89 58.4
Nitab4.5_0005330g0060 Nicotiana tabacum HOM05D002291 ORTHO05D002496 1.2e-17 94.0 111 49.5
Duzib168G2034 Durio zibethinus HOM05D002291 ORTHO05D002496 1.5e-17 93.6 106 51.9
Lj5g0000889 Lotus japonicus HOM05D002291 ORTHO05D002496 2.0e-17 93.2 92 59.8
Cpa.g.sc46.90 Carica papaya HOM05D002291 ORTHO05D002496 2.6e-17 92.8 77 62.3
Nitab4.5_0001751g0020 Nicotiana tabacum HOM05D002291 ORTHO05D002496 5.7e-17 91.7 111 47.7
Sed0005811 Sechium edule HOM05D002291 ORTHO05D002496 5.7e-17 91.7 103 51.5
VMungo1309G2977 Vigna mungo HOM05D002291 ORTHO05D002496 5.7e-17 91.7 113 50.4
Cfa020885 Carpinus fangiana HOM05D002291 ORTHO05D002496 7.5e-17 91.3 106 48.1
ClCG02G017270 Citrullus lanatus HOM05D002291 ORTHO05D002496 7.5e-17 91.3 101 54.5
PGR142G0643 Punica granatum HOM05D002291 ORTHO05D002496 7.5e-17 91.3 133 45.9
Lalb_Chr08g0233841 Lupinus albus HOM05D002291 ORTHO05D002496 9.8e-17 90.9 101 55.4
Hma1.2p1_0182F.1_g080570 Hydrangea macrophylla HOM05D002291 ORTHO05D002496 2.2e-16 89.7 100 53.0
PGSC0003DMG401007888 Solanum tuberosum HOM05D002291 ORTHO05D002496 2.2e-16 89.7 99 50.5
Solyc12g010400.2 Solanum lycopersicum HOM05D002291 ORTHO05D002496 2.8e-16 89.4 95 50.5
Sopen12g005420 Solanum pennellii HOM05D002291 ORTHO05D002496 2.8e-16 89.4 95 50.5
MELO3C004444.2 Cucumis melo HOM05D002291 ORTHO05D002496 3.7e-16 89.0 101 52.5
Sabra18G0096600 Salix brachista HOM05D002291 ORTHO05D002496 3.7e-16 89.0 117 43.6
THA.LOC104826568 Tarenaya hassleriana HOM05D002291 ORTHO05D002496 4.8e-16 88.6 124 45.2
CiPaw.15G181400 Carya illinoinensis HOM05D002291 ORTHO05D002496 8.3e-16 87.8 81 59.3
BcaC01g05065 Brassica carinata HOM05D002291 ORTHO05D002496 1.4e-15 87.0 73 57.5
BolC3t15412H Brassica oleracea HOM05D002291 ORTHO05D002496 1.4e-15 87.0 73 57.5
Manes.06G041100 Manihot esculenta HOM05D002291 ORTHO05D002496 1.4e-15 87.0 92 53.3
A03p25670 Brassica napus HOM05D002291 ORTHO05D002496 1.8e-15 86.7 73 58.9
BraA03t11782Z Brassica rapa HOM05D002291 ORTHO05D002496 1.8e-15 86.7 73 58.9
CAN.G518.9 Capsicum annuum HOM05D002291 ORTHO05D002496 1.8e-15 86.7 101 47.5
MELO3C010261.2 Cucumis melo HOM05D002291 ORTHO05D002496 1.8e-15 86.7 79 53.2
DCAR_014930 Daucus carota HOM05D002291 ORTHO05D002496 1.8e-15 86.7 129 45.0
Sc14g0000090 Simmondsia chinensis HOM05D002291 ORTHO05D002496 1.8e-15 86.7 109 46.8
PGSC0003DMG400030741 Solanum tuberosum HOM05D002291 ORTHO05D002496 2.4e-15 86.3 97 48.5
PGSC0003DMG400030742 Solanum tuberosum HOM05D002291 ORTHO05D002496 2.4e-15 86.3 97 48.5
Peaxi162Scf00177g00073 Petunia axillaris HOM05D002291 ORTHO05D002496 3.1e-15 85.9 96 52.1
Peaxi162Scf00347g00017 Petunia axillaris HOM05D002291 ORTHO05D002496 3.1e-15 85.9 98 52.0
CsaV3_1G028530 Cucumis sativus L. HOM05D002291 ORTHO05D002496 4.1e-15 85.5 91 54.9
Gorai.004G275000 Gossypium raimondii HOM05D002291 ORTHO05D002496 4.1e-15 85.5 98 51.0
Oeu052182.1 Olea europaea HOM05D002291 ORTHO05D002496 4.1e-15 85.5 96 51.0
Sp4g28490 Schrenkiella parvula HOM05D002291 ORTHO05D002496 4.1e-15 85.5 126 42.1
C03p30620 Brassica napus HOM05D002291 ORTHO05D002496 5.4e-15 85.1 125 43.2
Migut.J01277 Erythranthe guttata HOM05D002291 ORTHO05D002496 7.0e-15 84.7 100 48.0
Glyma.17G104600 Glycine max HOM05D002291 ORTHO05D002496 7.0e-15 84.7 106 50.9
HanXRQChr03g0064541 Helianthus annuus HOM05D002291 ORTHO05D002496 7.0e-15 84.7 97 48.5
Solyc07g007050.1 Solanum lycopersicum HOM05D002291 ORTHO05D002496 7.0e-15 84.7 97 48.5
BcaC01g05064 Brassica carinata HOM05D002291 ORTHO05D002496 9.1e-15 84.3 123 43.9
Dinv43189 Davidia involucrata HOM05D002291 ORTHO05D002496 9.1e-15 84.3 95 52.6
Gohir.A08G237300 Gossypium hirsutum HOM05D002291 ORTHO05D002496 9.1e-15 84.3 110 47.3
Lalb_Chr23g0275801 Lupinus albus HOM05D002291 ORTHO05D002496 9.1e-15 84.3 102 52.0
Migut.K00368 Erythranthe guttata HOM05D002291 ORTHO05D002496 1.2e-14 84.0 99 50.5
THA.LOC104808924 Tarenaya hassleriana HOM05D002291 ORTHO05D002496 1.2e-14 84.0 100 50.0
THA.LOC104815397 Tarenaya hassleriana HOM05D002291 ORTHO05D002496 1.2e-14 84.0 102 47.1
ClCG06G012060 Citrullus lanatus HOM05D002291 ORTHO05D002496 1.6e-14 83.6 96 50.0
BcaNung05602 Brassica carinata HOM05D002291 ORTHO05D002496 2.0e-14 83.2 124 41.9
CSS0043235 Camellia sinensis var. sinensis HOM05D002291 ORTHO05D002496 2.0e-14 83.2 98 49.0
Lalb_Chr07g0179531 Lupinus albus HOM05D002291 ORTHO05D002496 2.0e-14 83.2 105 51.4
Oeu040780.1 Olea europaea HOM05D002291 ORTHO05D002496 2.0e-14 83.2 94 52.1
Oeu061127.1 Olea europaea HOM05D002291 ORTHO05D002496 2.0e-14 83.2 96 53.1
Sopen07g003120 Solanum pennellii HOM05D002291 ORTHO05D002496 2.0e-14 83.2 97 48.5
CARHR141790 Cardamine hirsuta HOM05D002291 ORTHO05D002496 2.7e-14 82.8 122 43.4
CSS0042018 Camellia sinensis var. sinensis HOM05D002291 ORTHO05D002496 3.5e-14 82.4 98 49.0
Phvul.003G175100 Phaseolus vulgaris HOM05D002291 ORTHO05D002496 3.5e-14 82.4 81 55.6
Gohir.D08G257900 Gossypium hirsutum HOM05D002291 ORTHO05D002496 4.5e-14 82.0 92 51.1
Actinidia38701 Actinidia chinensis HOM05D002291 ORTHO05D002496 5.9e-14 81.6 104 43.3
BcaC02g12525 Brassica carinata HOM05D002291 ORTHO05D002496 5.9e-14 81.6 75 53.3
A05p01310 Brassica napus HOM05D002291 ORTHO05D002496 5.9e-14 81.6 75 53.3
BolC4t21798H Brassica oleracea HOM05D002291 ORTHO05D002496 5.9e-14 81.6 75 53.3
BraA05t19129Z Brassica rapa HOM05D002291 ORTHO05D002496 5.9e-14 81.6 75 53.3
AL4G45830 Arabidopsis lyrata HOM05D002291 ORTHO05D002496 1.3e-13 80.5 76 53.9
AL4G45850 Arabidopsis lyrata HOM05D002291 ORTHO05D002496 1.3e-13 80.5 76 53.9
AL4G45870 Arabidopsis lyrata HOM05D002291 ORTHO05D002496 1.3e-13 80.5 76 53.9
AL4G45890 Arabidopsis lyrata HOM05D002291 ORTHO05D002496 1.3e-13 80.5 76 53.9
AT2G46490 Arabidopsis thaliana HOM05D002291 ORTHO05D002496 1.3e-13 80.5 76 53.9
C04p01440 Brassica napus HOM05D002291 ORTHO05D002496 1.3e-13 80.5 75 52.0
Carub.0004s2917 Capsella rubella HOM05D002291 ORTHO05D002496 1.7e-13 80.1 76 53.9
Aqoxy6G02828 Aquilegia oxysepala HOM05D002291 ORTHO05D002496 2.2e-13 79.7 99 51.5
Oeu038253.1 Olea europaea HOM05D002291 ORTHO05D002496 2.2e-13 79.7 96 47.9
CsaV3_2G003530 Cucumis sativus L. HOM05D007046 ORTHO05D008788 5.0e-13 78.6 81 56.8
PGR102G1132 Punica granatum HOM05D002291 ORTHO05D002496 5.0e-13 78.6 87 49.4
Sed0002205 Sechium edule HOM05D002291 ORTHO05D002496 5.0e-13 78.6 93 47.3
Sed0006817 Sechium edule HOM05D002291 ORTHO05D002496 5.0e-13 78.6 92 52.2
Glyma.13G157000 Glycine max HOM05D002291 ORTHO05D002496 6.5e-13 78.2 102 47.1
Nitab4.5_0001151g0070 Nicotiana tabacum HOM05D002291 ORTHO05D002496 6.5e-13 78.2 113 43.4
Lsat_1_v5_gn_7_47800 Lactuca sativa HOM05D002291 ORTHO05D002496 1.1e-12 77.4 97 47.4
Aqoxy7G03977 Aquilegia oxysepala HOM05D002291 ORTHO05D002496 1.5e-12 77.0 96 50.0
BcaB01g03214 Brassica carinata HOM05D002291 ORTHO05D002496 1.5e-12 77.0 135 40.7
Ciclev10009990m.g Citrus clementina HOM05D002291 ORTHO05D002496 1.9e-12 76.6 89 51.7
Oeu026098.1 Olea europaea HOM05D002291 ORTHO05D002496 1.9e-12 76.6 99 46.5
CiPaw.16G117500 Carya illinoinensis HOM05D002291 ORTHO05D002496 4.2e-12 75.5 80 50.0
Lalb_Chr13g0301181 Lupinus albus HOM05D002291 ORTHO05D002496 4.2e-12 75.5 110 42.7
Psat0s4009g0080 Pisum sativum HOM05D002291 ORTHO05D002496 4.2e-12 75.5 99 49.5
AT5G35110 Arabidopsis thaliana HOM05D002291 ORTHO05D002496 5.5e-12 75.1 90 48.9
Lalb_Chr11g0072841 Lupinus albus HOM05D002291 ORTHO05D002496 5.5e-12 75.1 104 46.2
ATR0629G115 Amborella trichopoda HOM05D002291 ORTHO05D002496 7.2e-12 74.7 107 38.3
Lsat_1_v5_gn_8_60440 Lactuca sativa HOM05D002291 ORTHO05D002496 7.2e-12 74.7 120 40.8
Sed0001206 Sechium edule HOM05D002291 ORTHO05D002496 9.5e-12 74.3 98 50.0
AL7G43990 Arabidopsis lyrata HOM05D002291 ORTHO05D002496 2.1e-11 73.2 90 47.8
EL10Ac8g18812 Beta vulgaris HOM05D002291 ORTHO05D002496 2.1e-11 73.2 100 47.0
PSO832G3277 Papaver somniferum HOM05D002291 ORTHO05D002496 2.1e-11 73.2 80 51.2
AUR62011250 Chenopodium quinoa HOM05D002291 ORTHO05D002496 2.7e-11 72.8 100 48.0
AUR62041454 Chenopodium quinoa HOM05D002291 ORTHO05D002496 2.7e-11 72.8 100 48.0
Lsat_1_v5_gn_8_60480 Lactuca sativa HOM05D002291 ORTHO05D002496 2.7e-11 72.8 118 43.2
Nn2g12255 Nelumbo nucifera HOM05D002291 ORTHO05D002496 2.7e-11 72.8 98 40.8
Sp7g07240 Schrenkiella parvula HOM05D002291 ORTHO05D002496 2.7e-11 72.8 77 49.4
Thhalv10005650m.g Eutrema salsugineum HOM05D002291 ORTHO05D002496 3.6e-11 72.4 99 46.5
SalBow1G0319 Salvia bowleyana HOM05D002291 ORTHO05D002496 3.6e-11 72.4 112 42.0
Aqoxy7G03523 Aquilegia oxysepala HOM05D002291 ORTHO05D002496 4.7e-11 72.0 99 43.4
BcaC07g37675 Brassica carinata HOM05D002291 ORTHO05D002496 6.1e-11 71.6 77 49.4
BolC8t48047H Brassica oleracea HOM05D002291 ORTHO05D002496 6.1e-11 71.6 77 49.4
CARHR217180 Cardamine hirsuta HOM05D002291 ORTHO05D002496 6.1e-11 71.6 92 46.7
HanXRQChr05g0143211 Helianthus annuus HOM05D002291 ORTHO05D002496 6.1e-11 71.6 116 41.4
Medtr2g461270 Medicago truncatula HOM05D002291 ORTHO05D002496 8.0e-11 71.2 115 41.7
A08p09600 Brassica napus HOM05D002291 ORTHO05D002496 1.8e-10 70.1 77 48.1
BraA08t32957Z Brassica rapa HOM05D002291 ORTHO05D002496 1.8e-10 70.1 77 48.1
TPR.G22803 Trifolium pratense HOM05D002291 ORTHO05D002496 1.8e-10 70.1 83 49.4
HanXRQChr06g0182051 Helianthus annuus HOM05D002291 ORTHO05D002496 3.0e-10 69.3 103 43.7
Carub.0007s3090 Capsella rubella HOM05D002291 ORTHO05D002496 4.0e-10 68.9 77 46.8
BcaB04g18061 Brassica carinata HOM05D002291 ORTHO05D002496 6.8e-10 68.2 77 46.8
MBI15_g31410_MAGBIO Magnolia biondii HOM05D002291 ORTHO05D002496 1.5e-09 67.0 76 46.1
TAR626G1664 Trochodendron aralioides HOM05D002291 ORTHO05D002496 1.5e-09 67.0 72 47.2
DCAR_020908 Daucus carota HOM05D002291 ORTHO05D002496 2.6e-09 66.2 80 46.2
Aqoxy7G03526 Aquilegia oxysepala HOM05D002291 ORTHO05D002496 3.4e-09 65.9 94 42.6
FAN26G0066 Fragaria x ananassa HOM05D002291 ORTHO05D002496 9.8e-09 64.3 104 34.6
HanXRQChr09g0243231 Helianthus annuus HOM05D002291 ORTHO05D002496 9.8e-09 64.3 94 41.5
DCAR_017763 Daucus carota HOM05D002291 ORTHO05D002496 1.3e-08 63.9 83 42.2
ECA240G4705 Erigeron canadensis HOM05D002291 ORTHO05D002496 1.7e-08 63.5 94 41.5
FAN23G1656 Fragaria x ananassa HOM05D002291 ORTHO05D000222 1.7e-08 63.5 104 34.6
Lsat_1_v5_gn_7_47820 Lactuca sativa HOM05D002291 ORTHO05D002496 1.7e-08 63.5 110 41.8
HanXRQChr03g0064551 Helianthus annuus HOM05D002291 ORTHO05D002496 2.8e-08 62.8 94 40.4
FAN28G2256 Fragaria x ananassa HOM05D002291 ORTHO05D002496 3.7e-08 62.4 104 34.6
Nn2g12256 Nelumbo nucifera HOM05D002291 ORTHO05D002496 6.3e-08 61.6 106 36.8
unitig_748.g7183 Utricularia gibba HOM05D002291 ORTHO05D002496 6.3e-08 61.6 101 41.6
FvH4_1g01630 Fragaria vesca HOM05D002291 ORTHO05D002496 8.3e-08 61.2 97 35.1
Nn8g39724 Nelumbo nucifera HOM05D002291 ORTHO05D002496 8.3e-08 61.2 80 40.0
ECA236G2080 Erigeron canadensis HOM05D002291 ORTHO05D002496 1.8e-07 60.1 110 35.5
Medtr4g116610 Medicago truncatula HOM05D002291 ORTHO05D048899 7.0e-07 58.2 97 40.2
RcHm_v2.0_Chr2g0086601 Rosa chinensis HOM05D002291 ORTHO05D002496 9.2e-07 57.8 98 32.7
Manes.14G139050 Manihot esculenta HOM05D002291 ORTHO05D002496 1.2e-06 57.4 82 35.4
Oeu040786.1 Olea europaea HOM05D002291 ORTHO05D002496 1.2e-06 57.4 93 37.6
Haze_19315 Corylus avellana HOM05D002291 ORTHO05D002496 1.6e-06 57.0 109 31.2
Aqoxy6G00792 Aquilegia oxysepala HOM05D002291 ORTHO05D002496 2.0e-06 56.6 98 38.8
COL.COLO4_24095 Corchorus olitorius HOM05D002291 ORTHO05D002496 2.7e-06 56.2 99 38.4
Haze_18941 Corylus avellana HOM05D002291 ORTHO05D002496 3.5e-06 55.8 89 32.6
Migut.K00372 Erythranthe guttata HOM05D002291 ORTHO05D002496 3.5e-06 55.8 84 36.9
MBI14_g15652_MAGBIO Magnolia biondii HOM05D002291 ORTHO05D002496 3.5e-06 55.8 97 42.3
Prupe.1G525100 Prunus persica HOM05D002291 ORTHO05D002496 3.5e-06 55.8 87 37.9
Prupe.7G254000 Prunus persica HOM05D002291 ORTHO05D002496 4.5e-06 55.5 95 37.9
RcHm_v2.0_Chr2g0086491 Rosa chinensis HOM05D002291 ORTHO05D002496 5.9e-06 55.1 93 36.6
MD15G1158800 Malus domestica HOM05D002291 ORTHO05D002496 7.7e-06 54.7 92 34.8


User provided reference genes

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