Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G0592 Fragaria x ananassa HOM05D003590 ORTHO05D004290 3.5e-59 231.5 124 100.0
FAN26G3423 Fragaria x ananassa HOM05D003590 ORTHO05D004290 6.9e-55 217.2 123 93.5
FAN19G0667 Fragaria x ananassa HOM05D003590 ORTHO05D004290 2.3e-50 202.2 122 89.3
MD17G1177400 Malus domestica HOM05D003590 ORTHO05D004290 8.2e-48 193.7 123 82.9
RcHm_v2.0_Chr2g0122441 Rosa chinensis HOM05D003590 ORTHO05D004290 2.6e-46 188.7 129 81.4
Prupe.1G203200 Prunus persica HOM05D003590 ORTHO05D004290 5.9e-46 187.6 123 81.3
FAN27G0950 Fragaria x ananassa HOM05D003590 ORTHO05D004290 7.7e-46 187.2 123 83.7
FAN15G3511 Fragaria x ananassa HOM05D003590 ORTHO05D004290 2.9e-45 185.3 123 82.9
FAN24G1875 Fragaria x ananassa HOM05D003590 ORTHO05D004290 5.0e-45 184.5 123 82.9
MD00G1019200 Malus domestica HOM05D003590 ORTHO05D004290 6.5e-45 184.1 123 80.5
FvH4_2g19990 Fragaria vesca HOM05D003590 ORTHO05D004290 1.4e-44 183.0 123 82.1
RcHm_v2.0_Chr6g0285711 Rosa chinensis HOM05D003590 ORTHO05D004290 3.2e-44 181.8 126 79.4
RcHm_v2.0_Chr5g0028111 Rosa chinensis HOM05D003590 ORTHO05D004290 4.5e-38 161.4 123 70.7
FvH4_1g24800 Fragaria vesca HOM05D003590 ORTHO05D004290 1.7e-37 159.5 88 96.6
FvH4_6g53380 Fragaria vesca HOM05D003590 ORTHO05D004290 7.2e-36 154.1 123 74.0
Ciclev10021047m.g Citrus clementina HOM05D003590 ORTHO05D004290 1.2e-35 153.3 123 68.3
FvH4_3g16870 Fragaria vesca HOM05D003590 ORTHO05D004290 1.2e-35 153.3 123 69.1
Dinv33190 Davidia involucrata HOM05D003590 ORTHO05D004290 1.0e-34 150.2 123 67.5
Cfa015230 Carpinus fangiana HOM05D003590 ORTHO05D004290 1.8e-34 149.4 123 69.9
CANSAT64G0301 Cannabis sativa HOM05D003590 ORTHO05D004290 5.1e-34 147.9 123 68.3
Atru.chr4.1363 Acer truncatum HOM05D003590 ORTHO05D004290 6.7e-34 147.5 124 66.9
Duzib151G0409 Durio zibethinus HOM05D003590 ORTHO05D004290 3.3e-33 145.2 126 62.7
CiPaw.01G172800 Carya illinoinensis HOM05D003590 ORTHO05D004290 5.7e-33 144.4 123 66.7
ClCG07G015120 Citrullus lanatus HOM05D003590 ORTHO05D004290 7.4e-33 144.1 123 62.6
MELO3C017774.2 Cucumis melo HOM05D003590 ORTHO05D004290 1.7e-32 142.9 123 61.8
Gohir.D10G124700 Gossypium hirsutum HOM05D003590 ORTHO05D004290 2.2e-32 142.5 123 61.0
Gorai.011G137800 Gossypium raimondii HOM05D003590 ORTHO05D004290 2.2e-32 142.5 123 61.0
Gohir.A10G141800 Gossypium hirsutum HOM05D003590 ORTHO05D004290 2.8e-32 142.1 123 61.0
CiPaw.02G102900 Carya illinoinensis HOM05D003590 ORTHO05D004290 3.7e-32 141.7 118 71.2
TAR362G0082 Trochodendron aralioides HOM05D003590 ORTHO05D004290 8.2e-32 140.6 123 66.7
CsaV3_4G002670 Cucumis sativus L. HOM05D003590 ORTHO05D004290 1.1e-31 140.2 123 61.0
Cpa.g.sc9.339 Carica papaya HOM05D003590 ORTHO05D004290 1.8e-31 139.4 123 61.8
QL10p052769 Quercus lobata HOM05D003590 ORTHO05D004290 4.5e-30 134.8 132 62.1
Thecc.04G169500 Theobroma cacao HOM05D003590 ORTHO05D004290 1.7e-29 132.9 125 60.8
Sed0008844 Sechium edule HOM05D003590 ORTHO05D004290 6.5e-29 131.0 123 60.2
Duzib212G0521 Durio zibethinus HOM05D003590 ORTHO05D004290 1.5e-28 129.8 123 56.1
CSS0039108 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 2.5e-28 129.0 123 60.2
Manes.11G128000 Manihot esculenta HOM05D003590 ORTHO05D004290 3.2e-28 128.6 130 60.0
CSS0008581 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 4.2e-28 128.3 123 60.2
Dinv15385 Davidia involucrata HOM05D003590 ORTHO05D004290 7.2e-28 127.5 124 66.1
Glyma.12G049400 Glycine max HOM05D003590 ORTHO05D004290 7.2e-28 127.5 124 62.1
Phvul.008G099200 Phaseolus vulgaris HOM05D003590 ORTHO05D004290 7.2e-28 127.5 124 61.3
Glyma.11G124800 Glycine max HOM05D003590 ORTHO05D004290 9.4e-28 127.1 124 62.1
Eucgr.A00018 Eucalyptus grandis HOM05D003590 ORTHO05D004290 1.2e-27 126.7 124 60.5
MBI07_g22611_MAGBIO Magnolia biondii HOM05D003590 ORTHO05D004290 1.2e-27 126.7 123 58.5
Rhsim09G0012200 Rhododendron simsii HOM05D003590 ORTHO05D004290 1.2e-27 126.7 123 61.8
Gohir.A02G091600 Gossypium hirsutum HOM05D003590 ORTHO05D004290 2.7e-27 125.6 127 56.7
Duzib268G1650 Durio zibethinus HOM05D003590 ORTHO05D004290 3.6e-27 125.2 125 56.8
Gohir.D02G109000 Gossypium hirsutum HOM05D003590 ORTHO05D004290 3.6e-27 125.2 127 56.7
Dinv29086 Davidia involucrata HOM05D003590 ORTHO05D004290 4.7e-27 124.8 124 62.9
Nn1g09673 Nelumbo nucifera HOM05D003590 ORTHO05D004290 4.7e-27 124.8 123 61.8
Manes.04G049785 Manihot esculenta HOM05D003590 ORTHO05D004290 6.1e-27 124.4 129 58.1
Sabra06G0097800 Salix brachista HOM05D003590 ORTHO05D004290 1.4e-26 123.2 129 58.9
Potri.006G123600 Populus trichocarpa HOM05D003590 ORTHO05D004290 3.0e-26 122.1 130 56.9
arahy.Tifrunner.gnm1.ann1.SY3MF3 Arachis hypogaea HOM05D003590 ORTHO05D004290 5.2e-26 121.3 123 60.2
Sed0014148 Sechium edule HOM05D003590 ORTHO05D004290 5.2e-26 121.3 123 59.3
vmacro00650 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 6.7e-26 120.9 123 57.7
Gorai.005G124600 Gossypium raimondii HOM05D003590 ORTHO05D004290 1.1e-25 120.2 127 56.7
Lj3g0023284 Lotus japonicus HOM05D003590 ORTHO05D004290 2.6e-25 119.0 126 59.5
Nn7g37627 Nelumbo nucifera HOM05D003590 ORTHO05D004290 3.3e-25 118.6 123 60.2
PSO384G2196 Papaver somniferum HOM05D003590 ORTHO05D004290 3.3e-25 118.6 123 54.5
Sc06g0005010 Simmondsia chinensis HOM05D003590 ORTHO05D004290 3.3e-25 118.6 114 58.8
vmacro00679 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 3.3e-25 118.6 123 56.9
VMungo1383G1305 Vigna mungo HOM05D003590 ORTHO05D004290 5.7e-25 117.9 124 58.9
Actinidia27105 Actinidia chinensis HOM05D003590 ORTHO05D004290 1.3e-24 116.7 123 55.3
CDE08G0825 Ceratophyllum demersum HOM05D003590 ORTHO05D004290 1.3e-24 116.7 123 56.9
Ca_20810_v3 Cicer arietinum L. HOM05D003590 ORTHO05D004290 1.3e-24 116.7 124 58.1
Lalb_Chr19g0138461 Lupinus albus HOM05D003590 ORTHO05D004290 1.3e-24 116.7 127 55.9
Lalb_Chr07g0192831 Lupinus albus HOM05D003590 ORTHO05D004290 2.2e-24 115.9 124 56.5
Sabra16G0098800 Salix brachista HOM05D003590 ORTHO05D004290 2.2e-24 115.9 123 56.1
PSO339G4307 Papaver somniferum HOM05D003590 ORTHO05D004290 3.7e-24 115.2 123 55.3
PGR119G1440 Punica granatum HOM05D003590 ORTHO05D004290 4.8e-24 114.8 124 57.3
arahy.Tifrunner.gnm1.ann1.YL8857 Arachis hypogaea HOM05D003590 ORTHO05D004290 8.2e-24 114.0 123 57.7
Solyc11g008990.2 Solanum lycopersicum HOM05D003590 ORTHO05D004290 1.4e-23 113.2 124 53.2
AUR62006641 Chenopodium quinoa HOM05D003590 ORTHO05D004290 1.8e-23 112.8 123 53.7
Nitab4.5_0004390g0060 Nicotiana tabacum HOM05D003590 ORTHO05D004290 1.8e-23 112.8 124 54.0
GSVIVG01019065001 Vitis vinifera HOM05D003590 ORTHO05D004290 1.8e-23 112.8 123 56.1
Eucgr.K00001 Eucalyptus grandis HOM05D003590 ORTHO05D004290 4.1e-23 111.7 124 54.8
Ah.06g195400 Amaranthus hybridus HOM05D003590 ORTHO05D004290 5.3e-23 111.3 123 52.8
CAN.G1177.3 Capsicum annuum HOM05D003590 ORTHO05D004290 5.3e-23 111.3 124 54.0
Potri.016G099400 Populus trichocarpa HOM05D003590 ORTHO05D004290 5.3e-23 111.3 128 53.9
Sopen11g004770 Solanum pennellii HOM05D003590 ORTHO05D004290 5.3e-23 111.3 124 52.4
CSS0013807 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 7.0e-23 110.9 109 58.7
PGR042G3827 Punica granatum HOM05D003590 ORTHO05D004290 7.0e-23 110.9 123 53.7
Eucgr.B01427 Eucalyptus grandis HOM05D003590 ORTHO05D004290 1.2e-22 110.2 124 54.0
Aqoxy2G04149 Aquilegia oxysepala HOM05D003590 ORTHO05D004290 1.6e-22 109.8 124 57.3
Medtr4g068210 Medicago truncatula HOM05D003590 ORTHO05D004290 1.6e-22 109.8 124 55.6
Peaxi162Scf00074g01833 Petunia axillaris HOM05D003590 ORTHO05D004290 2.0e-22 109.4 123 50.4
PGSC0003DMG400016231 Solanum tuberosum HOM05D003590 ORTHO05D004290 2.0e-22 109.4 124 52.4
EL10Ac4g10000 Beta vulgaris HOM05D003590 ORTHO05D004290 2.7e-22 109.0 123 50.4
HanXRQChr05g0149811 Helianthus annuus HOM05D003590 ORTHO05D004290 2.7e-22 109.0 124 58.1
MSTRG.8205 Avicennia marina HOM05D003590 ORTHO05D004290 4.5e-22 108.2 124 54.0
Psat7g208480 Pisum sativum HOM05D003590 ORTHO05D004290 4.5e-22 108.2 124 52.4
Lsat_1_v5_gn_9_37260 Lactuca sativa HOM05D003590 ORTHO05D004290 1.0e-21 107.1 124 53.2
Hund21913 Selenicereus undatus HOM05D003590 ORTHO05D004290 1.3e-21 106.7 123 52.0
Actinidia03270 Actinidia chinensis HOM05D003590 ORTHO05D004290 2.2e-21 105.9 125 54.4
Migut.F01864 Erythranthe guttata HOM05D003590 ORTHO05D004290 2.2e-21 105.9 120 50.8
HanXRQChr16g0500391 Helianthus annuus HOM05D003590 ORTHO05D004290 2.9e-21 105.5 126 56.3
AT1G65260 Arabidopsis thaliana HOM05D003590 ORTHO05D004290 3.8e-21 105.1 123 52.8
Lsat_1_v5_gn_8_26121 Lactuca sativa HOM05D003590 ORTHO05D004290 5.0e-21 104.8 124 52.4
TWI36G1101 Tripterygium wilfordii HOM05D003590 ORTHO05D004290 5.0e-21 104.8 77 71.4
unitig_52.g17513 Utricularia gibba HOM05D003590 ORTHO05D004290 5.0e-21 104.8 112 52.7
Hund07359 Selenicereus undatus HOM05D003590 ORTHO05D004290 6.5e-21 104.4 114 54.4
COL.COLO4_10136 Corchorus olitorius HOM05D003590 ORTHO05D004290 8.5e-21 104.0 77 70.1
THA.LOC104805702 Tarenaya hassleriana HOM05D003590 ORTHO05D004290 8.5e-21 104.0 123 48.8
CANSAT54G1837 Cannabis sativa HOM05D003590 ORTHO05D004290 1.1e-20 103.6 112 54.5
Lj1g0027383 Lotus japonicus HOM05D003590 ORTHO05D004290 1.9e-20 102.8 115 54.8
Cc09_g03870 Coffea canephora HOM05D003590 ORTHO05D004290 4.2e-20 101.7 124 50.0
SGA_v2.0_scaffold122G33190 Striga asiatica HOM05D003590 ORTHO05D004290 4.2e-20 101.7 125 51.2
Hma1.2p1_0831F.1_g225440 Hydrangea macrophylla HOM05D003590 ORTHO05D004290 7.2e-20 100.9 125 57.6
SalBow6G6444 Salvia bowleyana HOM05D003590 ORTHO05D004290 7.2e-20 100.9 123 48.8
TPR.G34214 Trifolium pratense HOM05D003590 ORTHO05D004290 7.2e-20 100.9 124 50.8
Oeu064494.2 Olea europaea HOM05D003590 ORTHO05D004290 9.4e-20 100.5 86 60.5
CARHR056900 Cardamine hirsuta HOM05D003590 ORTHO05D004290 1.2e-19 100.1 124 51.6
Glyma.18G243700 Glycine max HOM05D003590 ORTHO05D004290 1.2e-19 100.1 113 53.1
PSO782G1591 Papaver somniferum HOM05D003590 ORTHO05D004290 1.2e-19 100.1 121 52.9
HPP92_009006 Vanilla planifolia HOM05D003590 ORTHO05D004290 1.2e-19 100.1 97 58.8
Lj1A579G41 Lonicera japonica HOM05D003590 ORTHO05D004290 1.6e-19 99.8 78 67.9
Aa31LG2G2380 Aethionema arabicum HOM05D003590 ORTHO05D004290 2.1e-19 99.4 123 50.4
Phvul.008G052900 Phaseolus vulgaris HOM05D003590 ORTHO05D004290 2.1e-19 99.4 113 52.2
AL2G20260 Arabidopsis lyrata HOM05D003590 ORTHO05D004290 2.7e-19 99.0 124 51.6
Cpa.g.sc123.34 Carica papaya HOM05D003590 ORTHO05D004290 2.7e-19 99.0 120 53.3
PSO478G1249 Papaver somniferum HOM05D003590 ORTHO05D004290 2.7e-19 99.0 121 52.1
Sp5g19930 Schrenkiella parvula HOM05D003590 ORTHO05D004290 2.7e-19 99.0 124 51.6
Rhsim05G0167200 Rhododendron simsii HOM05D003590 ORTHO05D004290 8.0e-19 97.4 124 53.2
AL2G21940 Arabidopsis lyrata HOM05D003590 ORTHO05D004290 1.4e-18 96.7 124 50.8
Thhalv10018833m.g Eutrema salsugineum HOM05D003590 ORTHO05D004290 1.4e-18 96.7 124 50.8
A02p13120 Brassica napus HOM05D003590 ORTHO05D004290 1.8e-18 96.3 123 50.4
C02p21260 Brassica napus HOM05D003590 ORTHO05D004290 1.8e-18 96.3 123 50.4
BraA02t06368Z Brassica rapa HOM05D003590 ORTHO05D004290 2.3e-18 95.9 123 50.4
BolC2t08266H Brassica oleracea HOM05D003590 ORTHO05D004290 3.0e-18 95.5 123 49.6
Carub.0006s2551 Capsella rubella HOM05D003590 ORTHO05D004290 3.0e-18 95.5 124 50.0
MBI17_g21475_MAGBIO Magnolia biondii HOM05D003590 ORTHO05D004290 5.2e-18 94.7 88 59.1
BcaC03g14688 Brassica carinata HOM05D003590 ORTHO05D004290 6.8e-18 94.4 123 49.6
DCAR_002151 Daucus carota HOM05D003590 ORTHO05D004290 1.2e-17 93.6 77 62.3
DCAR_023942 Daucus carota HOM05D003590 ORTHO05D004290 1.2e-17 93.6 104 52.9
SGA_v2.0_scaffold62G21494 Striga asiatica HOM05D004200 ORTHO05D004996 1.2e-17 93.6 92 55.4
vmacro19566 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 1.5e-17 93.2 76 61.8
ATR0743G202 Amborella trichopoda HOM05D003590 ORTHO05D004290 2.0e-17 92.8 77 62.3
AL2G21120 Arabidopsis lyrata HOM05D003590 ORTHO05D004290 5.7e-17 91.3 124 50.8
BcaB05g24099 Brassica carinata HOM05D003590 ORTHO05D004290 5.7e-17 91.3 111 51.4
Pp3c2_28040 Physcomitrium patens HOM05D003590 ORTHO05D004290 9.8e-17 90.5 117 46.2
CANSAT11G1461 Cannabis sativa HOM05D003590 ORTHO05D004290 3.7e-16 88.6 108 53.7
Pp3c7_13570 Physcomitrium patens HOM05D003590 ORTHO05D004290 3.7e-16 88.6 103 51.5
Os01g0895100 Oryza sativa ssp. japonica HOM05D003590 ORTHO05D004290 8.3e-16 87.4 107 48.6
Zm00001eb144840 Zea mays HOM05D003590 ORTHO05D004290 1.1e-15 87.0 96 51.0
Zm00001eb365760 Zea mays HOM05D003590 ORTHO05D004290 5.4e-15 84.7 115 47.0
Oeu010166.1 Olea europaea HOM05D003590 ORTHO05D004290 2.7e-14 82.4 47 83.0
Mapoly0058s0048 Marchantia polymorpha HOM05D003590 ORTHO05D004290 3.5e-14 82.0 113 42.5
Haze_01407 Corylus avellana HOM05D003590 ORTHO05D004290 5.9e-14 81.3 47 83.0
SEGI_22814 Sequoiadendron giganteum HOM05D003590 ORTHO05D004290 5.0e-13 78.2 87 48.3
Lj3A152T20 Lonicera japonica HOM05D003590 ORTHO05D004290 6.5e-13 77.8 47 76.6
MD15G1434500 Malus domestica HOM05D003590 ORTHO05D004290 1.5e-12 76.6 47 76.6
GSVIVG01038103001 Vitis vinifera HOM05D003590 ORTHO05D004290 1.9e-12 76.3 47 78.7
SHI32795 Sapria himalayana HOM05D003590 ORTHO05D004290 7.2e-12 74.3 90 47.8
SMO115G0200 Selaginella moellendorffii HOM05D003590 ORTHO05D004290 1.6e-11 73.2 51 60.8
EL10Ac4g08485 Beta vulgaris HOM05D003590 ORTHO05D004290 6.1e-11 71.2 54 64.8
EL10Ac4g08487 Beta vulgaris HOM05D003590 ORTHO05D004290 6.1e-11 71.2 54 64.8
AagrBONN_evm.TU.Sc2ySwM_228.2375 Anthoceros agrestis HOM05D003590 ORTHO05D004290 2.3e-10 69.3 56 53.6
Pp3c10_14840 Physcomitrium patens HOM05D003590 ORTHO05D004290 4.0e-10 68.6 53 56.6
AagrBONN_evm.TU.Sc2ySwM_228.379 Anthoceros agrestis HOM05D003590 ORTHO05D004290 8.8e-10 67.4 47 59.6
CBR_g16972 Chara braunii HOM05D003590 ORTHO05D004290 3.4e-09 65.5 49 55.1
MCO10G215 Micromonas commoda HOM05D003590 ORTHO05D004290 3.4e-09 65.5 121 40.5
CBR_g79424 Chara braunii HOM05D003590 ORTHO05D004290 4.4e-09 65.1 45 62.2
PRCOL_00001168 Prasinoderma coloniale HOM05D003590 ORTHO05D004290 2.2e-08 62.8 51 51.0
Cre11.g468050 Chlamydomonas reinhardtii HOM05D003590 ORTHO05D004290 9.2e-07 57.4 46 47.8
Cre13.g583550 Chlamydomonas reinhardtii HOM05D003590 ORTHO05D004290 2.0e-06 56.2 56 46.4
ECA246G3922 Erigeron canadensis HOM05D003590 ORTHO05D004290 5.9e-06 54.7 35 71.4


User provided reference genes

Program Settings