Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G0570 Fragaria x ananassa HOM05D003632 ORTHO05D005497 5.7e-162 575.1 543 100.0
FAN26G0474 Fragaria x ananassa HOM05D003632 ORTHO05D017240 1.0e-46 192.2 198 57.6
FAN28G1390 Fragaria x ananassa HOM05D003632 ORTHO05D017240 8.3e-44 182.6 198 55.1
FvH4_1g28270 Fragaria vesca HOM05D003632 ORTHO05D005497 8.0e-39 166.0 278 67.6
FAN23G1588 Fragaria x ananassa HOM05D003632 ORTHO05D005497 7.0e-27 126.3 282 37.2
FvH4_7g03800 Fragaria vesca HOM05D003632 ORTHO05D005497 2.0e-26 124.8 282 36.9
FAN03G3001 Fragaria x ananassa HOM05D003632 ORTHO05D005497 2.0e-26 124.8 282 36.9
FvH4_1g30291 Fragaria vesca HOM05D003632 ORTHO05D005497 5.9e-26 123.2 282 36.5
FAN28G2113 Fragaria x ananassa HOM05D003632 ORTHO05D005497 7.8e-26 122.9 282 36.5
RcHm_v2.0_Chr3g0491051 Rosa chinensis HOM05D003632 ORTHO05D005497 1.0e-25 122.5 282 36.2
FAN19G1728 Fragaria x ananassa HOM05D003632 ORTHO05D005497 2.3e-25 121.3 243 38.3
FAN28G2388 Fragaria x ananassa HOM05D003632 ORTHO05D017240 2.3e-25 121.3 324 46.0
MD00G1204700 Malus domestica HOM05D003632 ORTHO05D005497 2.5e-24 117.9 282 35.8
Gohir.A01G101300 Gossypium hirsutum HOM05D003632 ORTHO05D005497 3.3e-24 117.5 243 36.2
Gohir.D01G086200 Gossypium hirsutum HOM05D003632 ORTHO05D005497 3.3e-24 117.5 243 36.2
MD00G1159400 Malus domestica HOM05D003632 ORTHO05D005497 3.3e-24 117.5 282 35.5
Medtr5g007380 Medicago truncatula HOM05D003632 ORTHO05D005497 3.3e-24 117.5 282 34.4
Ca_24435_v3 Cicer arietinum L. HOM05D003632 ORTHO05D005497 4.3e-24 117.1 282 34.8
COL.COLO4_04620 Corchorus olitorius HOM05D003632 ORTHO05D005497 5.6e-24 116.7 225 38.2
FAN06G4184 Fragaria x ananassa HOM05D003632 ORTHO05D005497 5.6e-24 116.7 106 68.9
Manes.05G198000 Manihot esculenta HOM05D003632 ORTHO05D005497 5.6e-24 116.7 282 34.4
TPR.G38003 Trifolium pratense HOM05D003632 ORTHO05D005497 5.6e-24 116.7 282 34.4
Gorai.002G111600 Gossypium raimondii HOM05D003632 ORTHO05D005497 7.3e-24 116.3 243 36.2
Thecc.08G097100 Theobroma cacao HOM05D003632 ORTHO05D005497 9.5e-24 115.9 225 38.2
FAN06G1370 Fragaria x ananassa HOM05D006280 ORTHO05D007876 1.2e-23 115.5 211 40.8
QL02p016456 Quercus lobata HOM05D003632 ORTHO05D005497 1.2e-23 115.5 282 34.8
TAR381G0543 Trochodendron aralioides HOM05D003632 ORTHO05D005497 1.6e-23 115.2 282 34.4
Potri.014G149200 Populus trichocarpa HOM05D003632 ORTHO05D005497 2.1e-23 114.8 282 34.0
CANSAT25G0240 Cannabis sativa HOM05D003632 ORTHO05D005497 2.8e-23 114.4 282 34.0
Lalb_Chr09g0320141 Lupinus albus HOM05D003632 ORTHO05D005497 2.8e-23 114.4 282 33.3
Glyma.01G233300 Glycine max HOM05D003632 ORTHO05D005497 3.6e-23 114.0 282 34.0
EL10As5g23474 Beta vulgaris HOM05D003632 ORTHO05D005497 4.7e-23 113.6 282 34.4
AUR62011864 Chenopodium quinoa HOM05D003632 ORTHO05D005497 4.7e-23 113.6 281 34.5
Duzib093G0207 Durio zibethinus HOM05D003632 ORTHO05D005497 4.7e-23 113.6 243 35.0
Ah.11g049790 Amaranthus hybridus HOM05D003632 ORTHO05D005497 6.2e-23 113.2 298 32.9
Nn6g31540 Nelumbo nucifera HOM05D003632 ORTHO05D005497 6.2e-23 113.2 282 33.7
Prupe.7G271900 Prunus persica HOM05D003632 ORTHO05D005497 6.2e-23 113.2 282 34.8
THA.LOC104806863 Tarenaya hassleriana HOM05D003632 ORTHO05D005497 6.2e-23 113.2 225 36.4
GSVIVG01013468001 Vitis vinifera HOM05D003632 ORTHO05D005497 6.2e-23 113.2 243 36.2
CSS0037547 Camellia sinensis var. sinensis HOM05D003632 ORTHO05D005497 8.0e-23 112.8 243 36.6
CDE06G0366 Ceratophyllum demersum HOM05D003632 ORTHO05D005497 8.0e-23 112.8 283 33.6
CANSAT01G2380 Cannabis sativa HOM05D003632 ORTHO05D005497 1.0e-22 112.5 276 34.1
CiPaw.08G079400 Carya illinoinensis HOM05D003632 ORTHO05D005497 1.0e-22 112.5 282 34.0
Dinv03487 Davidia involucrata HOM05D003632 ORTHO05D005497 1.0e-22 112.5 243 35.8
FvH4_7g00590 Fragaria vesca HOM05D003632 ORTHO05D046112 1.0e-22 112.5 149 51.7
Glyma.11G009500 Glycine max HOM05D003632 ORTHO05D005497 1.0e-22 112.5 282 33.7
LjContig00222g0019593 Lotus japonicus HOM05D003632 ORTHO05D005497 1.0e-22 112.5 282 33.0
arahy.Tifrunner.gnm1.ann1.LR79EL Arachis hypogaea HOM05D003632 ORTHO05D005497 1.4e-22 112.1 225 36.0
arahy.Tifrunner.gnm1.ann1.WPQ8T0 Arachis hypogaea HOM05D003632 ORTHO05D005497 1.4e-22 112.1 225 36.0
FAN10G0294 Fragaria x ananassa HOM05D003632 ORTHO05D005497 1.4e-22 112.1 224 40.6
FAN23G2090 Fragaria x ananassa HOM05D003632 ORTHO05D005497 1.4e-22 112.1 144 51.4
FAN27G3187 Fragaria x ananassa HOM05D003632 ORTHO05D005497 1.4e-22 112.1 103 63.1
Atru.chr13.15 Acer truncatum HOM05D003632 ORTHO05D005497 1.8e-22 111.7 225 36.9
AUR62024707 Chenopodium quinoa HOM05D003632 ORTHO05D005497 1.8e-22 111.7 231 37.2
Phvul.002G040800 Phaseolus vulgaris HOM05D003632 ORTHO05D005497 2.3e-22 111.3 282 33.0
VMungo1215G1560 Vigna mungo HOM05D003632 ORTHO05D005497 2.3e-22 111.3 282 33.0
CARHR285100 Cardamine hirsuta HOM05D003632 ORTHO05D005497 3.1e-22 110.9 281 33.5
CDE07G1872 Ceratophyllum demersum HOM05D003632 ORTHO05D005497 3.1e-22 110.9 283 33.2
Ciclev10000050m.g Citrus clementina HOM05D003632 ORTHO05D005497 3.1e-22 110.9 282 33.3
Migut.D01195 Erythranthe guttata HOM05D003632 ORTHO05D005497 3.1e-22 110.9 243 34.2
Thhalv10003133m.g Eutrema salsugineum HOM05D003632 ORTHO05D005497 3.1e-22 110.9 281 33.5
Lj5C162T4 Lonicera japonica HOM05D003632 ORTHO05D005497 3.1e-22 110.9 282 33.0
Duzib248G0791 Durio zibethinus HOM05D003632 ORTHO05D005497 4.0e-22 110.5 243 35.0
Potri.002G235700 Populus trichocarpa HOM05D003632 ORTHO05D005497 4.0e-22 110.5 282 33.3
TWI38G0156 Tripterygium wilfordii HOM05D003632 ORTHO05D005497 4.0e-22 110.5 225 36.4
A09p19660 Brassica napus HOM05D003632 ORTHO05D005497 5.2e-22 110.2 281 33.8
Cfa014172 Carpinus fangiana HOM05D003632 ORTHO05D005497 5.2e-22 110.2 282 33.7
MELO3C008771.2 Cucumis melo HOM05D003632 ORTHO05D005497 5.2e-22 110.2 282 34.0
CsaV3_2G009400 Cucumis sativus L. HOM05D003632 ORTHO05D005497 5.2e-22 110.2 282 34.0
TWI63G1168 Tripterygium wilfordii HOM05D003632 ORTHO05D005497 5.2e-22 110.2 282 33.7
AL8G19100 Arabidopsis lyrata HOM05D003632 ORTHO05D005497 6.8e-22 109.8 281 33.5
AT5G42390 Arabidopsis thaliana HOM05D003632 ORTHO05D005497 6.8e-22 109.8 281 33.5
BcaB07g31079 Brassica carinata HOM05D003632 ORTHO05D005497 6.8e-22 109.8 281 33.1
BcaNung05247 Brassica carinata HOM05D003632 ORTHO05D005497 6.8e-22 109.8 281 33.1
Rhsim02G0142400 Rhododendron simsii HOM05D003632 ORTHO05D005497 8.9e-22 109.4 242 35.1
THA.LOC104813211 Tarenaya hassleriana HOM05D003632 ORTHO05D005497 8.9e-22 109.4 286 32.9
BcaC04g21997 Brassica carinata HOM05D003632 ORTHO05D005497 1.2e-21 109.0 281 33.5
C09p25020 Brassica napus HOM05D003632 ORTHO05D005497 1.2e-21 109.0 281 33.5
Sp7g08050 Schrenkiella parvula HOM05D003632 ORTHO05D005497 1.2e-21 109.0 281 33.1
Hund02917 Selenicereus undatus HOM05D003632 ORTHO05D005497 1.2e-21 109.0 282 33.0
Aa31LG9G12540 Aethionema arabicum HOM05D003632 ORTHO05D005497 1.5e-21 108.6 286 32.9
Haze_22896 Corylus avellana HOM05D003632 ORTHO05D005497 1.5e-21 108.6 282 33.3
PSO675G5232 Papaver somniferum HOM05D003632 ORTHO05D005497 2.6e-21 107.8 282 33.0
PSO541G6510 Papaver somniferum HOM05D003632 ORTHO05D005497 3.4e-21 107.5 243 35.0
Eucgr.F03633 Eucalyptus grandis HOM05D003632 ORTHO05D005497 4.4e-21 107.1 243 33.7
Sed0011503 Sechium edule HOM05D003632 ORTHO05D005497 4.4e-21 107.1 282 33.3
Carub.0008s0677 Capsella rubella HOM05D003632 ORTHO05D005497 5.8e-21 106.7 281 33.1
Actinidia15538 Actinidia chinensis HOM05D003632 ORTHO05D005497 7.5e-21 106.3 243 34.6
Aqoxy5G00932 Aquilegia oxysepala HOM05D003632 ORTHO05D005497 7.5e-21 106.3 282 33.3
MSTRG.9366 Avicennia marina HOM05D003632 ORTHO05D005497 7.5e-21 106.3 243 33.7
Hma1.2p1_0471F.1_g159520 Hydrangea macrophylla HOM05D003632 ORTHO05D005497 7.5e-21 106.3 239 34.7
Psat2g189160 Pisum sativum HOM05D003632 ORTHO05D005497 7.5e-21 106.3 225 35.6
vmacro15971 Vaccinium macrocarpon HOM05D003632 ORTHO05D005497 7.5e-21 106.3 224 36.6
HPP92_022034 Vanilla planifolia HOM05D003632 ORTHO05D005497 7.5e-21 106.3 225 36.0
Oeu015114.3 Olea europaea HOM05D003632 ORTHO05D005497 9.8e-21 105.9 238 34.5
PSO017G4161 Papaver somniferum HOM05D003632 ORTHO05D005497 1.3e-20 105.5 225 35.6
ATR0605G213 Amborella trichopoda HOM05D003632 ORTHO05D005497 1.7e-20 105.1 282 32.6
Nitab4.5_0002450g0120 Nicotiana tabacum HOM05D003632 ORTHO05D005497 3.7e-20 104.0 243 33.3
Solyc03g118430.3 Solanum lycopersicum HOM05D003632 ORTHO05D005497 4.9e-20 103.6 225 35.1
Sopen03g037320 Solanum pennellii HOM05D003632 ORTHO05D005497 4.9e-20 103.6 225 35.1
PGSC0003DMG400014254 Solanum tuberosum HOM05D003632 ORTHO05D005497 4.9e-20 103.6 225 35.1
Cc04_g05970 Coffea canephora HOM05D003632 ORTHO05D005497 6.4e-20 103.2 243 33.7
DCAR_003535 Daucus carota HOM05D003632 ORTHO05D005497 6.4e-20 103.2 225 34.2
Peaxi162Scf00314g00434 Petunia axillaris HOM05D003632 ORTHO05D005497 6.4e-20 103.2 225 34.7
Sc17g0000620 Simmondsia chinensis HOM05D003632 ORTHO05D005497 6.4e-20 103.2 282 31.9
Nitab4.5_0002046g0120 Nicotiana tabacum HOM05D003632 ORTHO05D005497 8.3e-20 102.8 243 33.3
CAN.G2827.2 Capsicum annuum HOM05D003632 ORTHO05D005497 1.1e-19 102.4 225 34.7
CAN.G843.30 Capsicum annuum HOM05D003632 ORTHO05D005497 1.1e-19 102.4 225 34.7
FAN10G0430 Fragaria x ananassa HOM05D003632 ORTHO05D005497 1.4e-19 102.1 240 36.2
PSO170G0589 Papaver somniferum HOM05D003632 ORTHO05D005497 1.4e-19 102.1 225 35.6
Rhsim09G0100400 Rhododendron simsii HOM05D003632 ORTHO05D005497 1.9e-19 101.7 256 32.8
BolC9t55396H Brassica oleracea HOM05D003632 ORTHO05D005497 3.2e-19 100.9 273 33.7
BraA09t37577Z Brassica rapa HOM05D003632 ORTHO05D005497 3.2e-19 100.9 273 33.7
FAN26G0913 Fragaria x ananassa HOM05D003632 ORTHO05D005497 4.1e-19 100.5 140 48.6
unitig_0.g345 Utricularia gibba HOM05D003632 ORTHO05D005497 5.4e-19 100.1 225 34.2
FAN03G0989 Fragaria x ananassa HOM05D003632 ORTHO05D005497 7.0e-19 99.8 125 49.6
FAN10G1660 Fragaria x ananassa HOM05D003632 ORTHO05D046112 1.2e-18 99.0 160 46.9
SHI18575 Sapria himalayana HOM05D003632 ORTHO05D005497 2.0e-18 98.2 228 33.8
Lsat_1_v5_gn_7_31540 Lactuca sativa HOM05D003632 ORTHO05D005497 3.5e-18 97.4 225 32.4
PGR031G0531 Punica granatum HOM05D003632 ORTHO05D005497 3.5e-18 97.4 225 33.3
HanXRQChr15g0481001 Helianthus annuus HOM05D003632 ORTHO05D005497 4.6e-18 97.1 225 32.4
FAN28G0698 Fragaria x ananassa HOM05D003632 ORTHO05D017240 6.0e-18 96.7 148 43.9
ECA236G2986 Erigeron canadensis HOM05D003632 ORTHO05D005497 1.0e-17 95.9 225 32.9
HanXRQChr04g0119021 Helianthus annuus HOM05D003632 ORTHO05D005497 1.0e-17 95.9 226 32.3
FvH4_7g05210 Fragaria vesca HOM05D003632 ORTHO05D017240 1.7e-17 95.1 76 71.1
FAN06G1218 Fragaria x ananassa HOM05D003632 ORTHO05D005497 3.9e-17 94.0 234 35.0
Cpa.g.sc36.89 Carica papaya HOM05D003632 ORTHO05D005497 8.6e-17 92.8 238 34.9
Sabra14G0112500 Salix brachista HOM05D003632 ORTHO05D005497 2.5e-16 91.3 86 60.5
MBI01_g09379_MAGBIO Magnolia biondii HOM05D003632 ORTHO05D005497 5.6e-16 90.1 274 31.8
Lalb_Chr16g0376561 Lupinus albus HOM05D003632 ORTHO05D005497 6.2e-15 86.7 92 56.5
Os06g0625400 Oryza sativa ssp. japonica HOM05D003632 ORTHO05D005497 8.1e-15 86.3 218 32.1
SalBow1G1353 Salvia bowleyana HOM05D003632 ORTHO05D005497 8.1e-15 86.3 200 32.0
Zm00001eb387800 Zea mays HOM05D003632 ORTHO05D005497 1.1e-14 85.9 218 31.7
Pp3c16_2100 Physcomitrium patens HOM05D003632 ORTHO05D005497 1.2e-13 82.4 282 27.3
FAN06G0859 Fragaria x ananassa HOM05D003632 ORTHO05D046128 1.5e-13 82.0 113 48.7
Zm00001eb275640 Zea mays HOM05D003632 ORTHO05D005497 1.5e-13 82.0 218 31.2
Mapoly0022s0090 Marchantia polymorpha HOM05D003632 ORTHO05D005497 7.5e-13 79.7 282 26.6
AagrBONN_evm.TU.Sc2ySwM_117.2840 Anthoceros agrestis HOM05D003632 ORTHO05D005497 1.7e-12 78.6 225 28.9
FAN06G3471 Fragaria x ananassa HOM05D003632 ORTHO05D017240 3.7e-12 77.4 44 88.6
FAN10G3171 Fragaria x ananassa HOM05D003632 ORTHO05D005497 1.4e-11 75.5 40 95.0
CAN.G1425.12 Capsicum annuum HOM05D003632 ORTHO05D005497 7.1e-11 73.2 209 31.1
FvH4_7g02670 Fragaria vesca HOM05D003632 ORTHO05D017240 9.2e-11 72.8 42 85.7
arahy.Tifrunner.gnm1.ann1.Q7U2Y9 Arachis hypogaea HOM05D003632 ORTHO05D021463 5.1e-09 67.0 49 67.3
CBR_g32249 Chara braunii HOM05D003632 ORTHO05D005497 6.6e-09 66.6 86 43.0
FvH4_7g01530 Fragaria vesca HOM05D003632 ORTHO05D021463 9.5e-08 62.8 37 86.5
FvH4_7g01860 Fragaria vesca HOM05D003632 ORTHO05D046128 1.2e-07 62.4 40 77.5
Glyma.05G077034 Glycine max HOM05D003632 ORTHO05D021463 2.1e-07 61.6 62 51.6
FvH4_7g05200 Fragaria vesca HOM05D003632 ORTHO05D196677 2.8e-07 61.2 43 69.8
FAN06G0417 Fragaria x ananassa HOM05D003632 ORTHO05D021463 1.1e-06 59.3 37 81.1
Aa31LG2G1380 Aethionema arabicum HOM05D003632 ORTHO05D017240 2.3e-06 58.2 58 51.7
FvH4_7g00770 Fragaria vesca HOM05D003632 ORTHO05D002531 3.1e-06 57.8 34 82.4
FAN10G3129 Fragaria x ananassa HOM05D003632 ORTHO05D201925 3.1e-06 57.8 32 78.1
FAN03G2152 Fragaria x ananassa HOM05D003632 ORTHO05D005497 5.2e-06 57.0 79 49.4


User provided reference genes

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