Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G0499 Fragaria x ananassa HOM05D005306 ORTHO05D006158 2.8e-194 681.8 345 100.0
FvH4_1g21240 Fragaria vesca HOM05D005306 ORTHO05D006158 3.4e-184 648.3 333 97.9
FAN23G1139 Fragaria x ananassa HOM05D005306 ORTHO05D006158 2.4e-174 615.5 333 94.0
FAN26G1901 Fragaria x ananassa HOM05D005306 ORTHO05D006158 1.7e-172 609.4 333 93.4
FAN28G0785 Fragaria x ananassa HOM05D005306 ORTHO05D006158 4.3e-171 604.7 333 92.5
RcHm_v2.0_Chr2g0115081 Rosa chinensis HOM05D005306 ORTHO05D006158 7.1e-158 560.8 336 86.0
Prupe.6G182000 Prunus persica HOM05D005306 ORTHO05D006158 3.6e-93 345.9 357 58.8
MD01G1027000 Malus domestica HOM05D005306 ORTHO05D006158 1.7e-90 337.0 357 57.1
MD15G1327000 Malus domestica HOM05D005306 ORTHO05D006158 2.0e-88 330.1 357 55.5
QL06p049976 Quercus lobata HOM05D005306 ORTHO05D006158 2.5e-62 243.4 352 46.0
CiPaw.04G097600 Carya illinoinensis HOM05D005306 ORTHO05D006158 5.1e-55 219.2 350 43.7
QL04p017893 Quercus lobata HOM05D005306 ORTHO05D006158 3.3e-54 216.5 350 47.1
Cpa.g.sc20.237 Carica papaya HOM05D005306 ORTHO05D006158 1.8e-52 210.7 356 39.9
Dinv16302 Davidia involucrata HOM05D005306 ORTHO05D006158 4.4e-51 206.1 351 42.7
Manes.12G136900 Manihot esculenta HOM05D005306 ORTHO05D006158 3.8e-50 203.0 359 42.3
Haze_24956 Corylus avellana HOM05D005306 ORTHO05D006158 5.4e-49 199.1 345 40.6
Dinv21926 Davidia involucrata HOM05D005306 ORTHO05D006158 7.1e-49 198.7 355 40.3
Cfa002685 Carpinus fangiana HOM05D005306 ORTHO05D006158 3.0e-47 193.4 357 41.2
Atru.chr4.126 Acer truncatum HOM05D005306 ORTHO05D006158 5.1e-47 192.6 355 40.3
Ciclev10025982m.g Citrus clementina HOM05D005306 ORTHO05D006158 1.5e-46 191.0 354 40.4
CiPaw.03G140300 Carya illinoinensis HOM05D005306 ORTHO05D006158 1.2e-45 188.0 229 52.4
Actinidia36600 Actinidia chinensis HOM05D005306 ORTHO05D006158 1.6e-45 187.6 354 40.1
vmacro12947 Vaccinium macrocarpon HOM05D005306 ORTHO05D006158 6.9e-44 182.2 347 38.6
CSS0034809 Camellia sinensis var. sinensis HOM05D005306 ORTHO05D006158 5.8e-43 179.1 356 38.8
Potri.007G090500 Populus trichocarpa HOM05D005306 ORTHO05D006158 7.6e-43 178.7 355 41.7
Lj4A885T20 Lonicera japonica HOM05D005306 ORTHO05D006158 2.9e-42 176.8 345 41.2
Gohir.A11G052900 Gossypium hirsutum HOM05D005306 ORTHO05D006158 8.4e-42 175.3 338 39.9
Gohir.D11G056300 Gossypium hirsutum HOM05D005306 ORTHO05D006158 5.4e-41 172.6 334 40.1
Sabra07G0074200 Salix brachista HOM05D005306 ORTHO05D006158 2.1e-40 170.6 352 39.8
Thecc.01G104400 Theobroma cacao HOM05D005306 ORTHO05D006158 2.1e-40 170.6 354 37.0
Gohir.D12G096600 Gossypium hirsutum HOM05D005306 ORTHO05D006158 4.6e-40 169.5 337 38.3
Gorai.008G104700 Gossypium raimondii HOM05D005306 ORTHO05D006158 4.6e-40 169.5 337 38.3
Potri.005G077400 Populus trichocarpa HOM05D005306 ORTHO05D006158 7.8e-40 168.7 346 39.3
Gorai.007G061500 Gossypium raimondii HOM05D005306 ORTHO05D006158 1.0e-39 168.3 338 39.1
TWI53G1353 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 3.9e-39 166.4 357 38.7
TWI77G0207 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 2.5e-38 163.7 351 37.6
COL.COLO4_09939 Corchorus olitorius HOM05D005306 ORTHO05D006158 1.6e-37 161.0 340 35.9
TAR625G0717 Trochodendron aralioides HOM05D005306 ORTHO05D006158 2.8e-37 160.2 370 37.6
PGR102G1853 Punica granatum HOM05D005306 ORTHO05D006158 3.6e-37 159.8 332 39.5
ClCG01G018910 Citrullus lanatus HOM05D005306 ORTHO05D006158 1.1e-36 158.3 347 37.8
Eucgr.H04811 Eucalyptus grandis HOM05D005306 ORTHO05D006158 4.0e-36 156.4 366 38.3
Gohir.A12G079125 Gossypium hirsutum HOM05D005306 ORTHO05D006158 5.3e-36 156.0 339 36.6
GSVIVG01004251001 Vitis vinifera HOM05D005306 ORTHO05D006158 9.0e-36 155.2 258 43.0
CsaV3_6G045590 Cucumis sativus L. HOM05D005306 ORTHO05D006158 1.3e-34 151.4 344 35.8
TAR381G0610 Trochodendron aralioides HOM05D005306 ORTHO05D006158 1.7e-34 151.0 382 33.8
MELO3C007770.2 Cucumis melo HOM05D005306 ORTHO05D006158 4.9e-34 149.4 349 36.1
THA.LOC104818490 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 2.1e-32 144.1 340 35.3
Duzib147G0288 Durio zibethinus HOM05D005306 ORTHO05D006158 2.7e-32 143.7 150 54.7
CANSAT01G2249 Cannabis sativa HOM05D005306 ORTHO05D006158 2.3e-31 140.6 205 46.3
Aa31LG1G16850 Aethionema arabicum HOM05D005306 ORTHO05D006158 3.0e-31 140.2 344 32.8
AUR62003775 Chenopodium quinoa HOM05D005306 ORTHO05D006158 3.0e-31 140.2 336 32.7
AUR62002025 Chenopodium quinoa HOM05D005306 ORTHO05D006158 5.1e-31 139.4 338 32.2
THA.LOC104819305 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 1.5e-30 137.9 352 34.4
Nn5g29063 Nelumbo nucifera HOM05D005306 ORTHO05D006158 4.3e-30 136.3 363 35.5
Sed0001570 Sechium edule HOM05D005306 ORTHO05D006158 2.1e-29 134.0 344 35.2
DCAR_014236 Daucus carota HOM05D005306 ORTHO05D006158 2.8e-29 133.7 347 34.3
BcaC01g02741 Brassica carinata HOM05D005306 ORTHO05D006158 3.1e-28 130.2 334 34.4
C03p61010 Brassica napus HOM05D005306 ORTHO05D006158 3.1e-28 130.2 334 34.4
BolC3t18363H Brassica oleracea HOM05D005306 ORTHO05D006158 3.1e-28 130.2 334 34.4
Sp2g28200 Schrenkiella parvula HOM05D005306 ORTHO05D006158 5.3e-28 129.4 345 33.6
AL8G42620 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 1.2e-27 128.3 329 33.7
Carub.0008s2596 Capsella rubella HOM05D005306 ORTHO05D006158 1.5e-27 127.9 325 31.4
AT5G65120 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 2.0e-27 127.5 327 32.4
Carub.0006s0857 Capsella rubella HOM05D005306 ORTHO05D006158 3.4e-27 126.7 324 35.8
A06p31940 Brassica napus HOM05D005306 ORTHO05D006158 9.9e-27 125.2 333 32.1
BraA06t26127Z Brassica rapa HOM05D005306 ORTHO05D006158 1.3e-26 124.8 335 33.1
Thhalv10014214m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 2.2e-26 124.0 330 32.1
Sp6g33290 Schrenkiella parvula HOM05D005306 ORTHO05D006158 8.4e-26 122.1 335 32.2
Thhalv10004547m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 1.4e-25 121.3 334 32.6
Nn1g05302 Nelumbo nucifera HOM05D005306 ORTHO05D006158 3.2e-25 120.2 373 33.0
BcaB02g09863 Brassica carinata HOM05D005306 ORTHO05D006158 7.9e-24 115.5 343 33.2
AT5G10110 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 1.3e-23 114.8 334 32.9
HanXRQChr15g0484181 Helianthus annuus HOM05D005306 ORTHO05D006158 1.3e-23 114.8 363 31.4
Lsat_1_v5_gn_4_141700 Lactuca sativa HOM05D005306 ORTHO05D006158 2.3e-23 114.0 345 32.5
CARHR279030 Cardamine hirsuta HOM05D005306 ORTHO05D006158 3.0e-23 113.6 337 31.5
PSO210G6319 Papaver somniferum HOM05D005306 ORTHO05D006158 3.0e-23 113.6 156 45.5
TWI74G0266 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 3.0e-23 113.6 210 38.6
Cc07_g15400 Coffea canephora HOM05D005306 ORTHO05D006158 8.7e-23 112.1 330 33.0
AL6G20570 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 1.1e-22 111.7 335 33.1
Lsat_1_v5_gn_5_43440 Lactuca sativa HOM05D005306 ORTHO05D006158 1.1e-22 111.7 342 34.5
CARHR203180 Cardamine hirsuta HOM05D005306 ORTHO05D006158 2.5e-22 110.5 350 32.0
BraA09t36544Z Brassica rapa HOM05D005306 ORTHO05D006158 3.3e-22 110.2 338 31.7
Aqoxy6G00585 Aquilegia oxysepala HOM05D005306 ORTHO05D006158 4.3e-22 109.8 341 30.2
Lalb_Chr07g0185101 Lupinus albus HOM05D005306 ORTHO05D006158 2.1e-21 107.5 116 48.3
Hund13638 Selenicereus undatus HOM05D005306 ORTHO05D006158 2.1e-21 107.5 275 31.6
BraA03t09786Z Brassica rapa HOM05D005306 ORTHO05D006158 2.8e-21 107.1 123 50.4
A03p04410 Brassica napus HOM05D005306 ORTHO05D006158 4.8e-21 106.3 210 37.6
C03p04880 Brassica napus HOM05D005306 ORTHO05D006158 4.8e-21 106.3 210 37.6
BolC3t13020H Brassica oleracea HOM05D005306 ORTHO05D006158 4.8e-21 106.3 210 37.6
ECA232G0837 Erigeron canadensis HOM05D005306 ORTHO05D006158 8.2e-21 105.5 151 41.1
Lalb_Chr13g0296051 Lupinus albus HOM05D005306 ORTHO05D006158 8.2e-21 105.5 116 48.3
arahy.Tifrunner.gnm1.ann1.U0X1YR Arachis hypogaea HOM05D005306 ORTHO05D006158 1.4e-20 104.8 327 30.0
C09p10370 Brassica napus HOM05D005306 ORTHO05D006158 1.8e-20 104.4 333 32.1
A09p08930 Brassica napus HOM05D005306 ORTHO05D006158 2.4e-20 104.0 335 29.9
BcaB04g20004 Brassica carinata HOM05D005306 ORTHO05D006158 3.1e-20 103.6 335 30.7
MSTRG.2558 Avicennia marina HOM05D005306 ORTHO05D006158 4.0e-20 103.2 113 50.4
BolC9t53937H Brassica oleracea HOM05D005306 ORTHO05D006158 4.0e-20 103.2 333 31.8
Solyc04g054900.3 Solanum lycopersicum HOM05D005306 ORTHO05D006158 9.0e-20 102.1 354 29.4
arahy.Tifrunner.gnm1.ann1.H9PZRL Arachis hypogaea HOM05D005306 ORTHO05D006158 1.2e-19 101.7 327 30.0
PGSC0003DMG400020626 Solanum tuberosum HOM05D005306 ORTHO05D006158 1.2e-19 101.7 355 29.9
BcaC04g23269 Brassica carinata HOM05D005306 ORTHO05D006158 2.0e-19 100.9 340 29.7
Nitab4.5_0000104g0330 Nicotiana tabacum HOM05D005306 ORTHO05D006158 2.6e-19 100.5 349 30.9
Medtr8g090365 Medicago truncatula HOM05D005306 ORTHO05D006158 3.4e-19 100.1 344 29.9
Nitab4.5_0004120g0030 Nicotiana tabacum HOM05D005306 ORTHO05D006158 1.0e-18 98.6 352 30.7
SalBow3G4455 Salvia bowleyana HOM05D005306 ORTHO05D006158 1.0e-18 98.6 112 45.5
Migut.H02371 Erythranthe guttata HOM05D005306 ORTHO05D006158 1.3e-18 98.2 112 48.2
Psat7g054080 Pisum sativum HOM05D005306 ORTHO05D006158 1.3e-18 98.2 345 32.5
Sopen04g024710 Solanum pennellii HOM05D005306 ORTHO05D006158 1.3e-18 98.2 354 29.1
MSTRG.23333 Avicennia marina HOM05D005306 ORTHO05D006158 2.5e-17 94.0 191 36.6
THA.LOC104801720 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 2.5e-17 94.0 280 32.5
Sed0017418 Sechium edule HOM05D005306 ORTHO05D006158 3.2e-17 93.6 331 30.5
Aa31LG3G17030 Aethionema arabicum HOM05D005306 ORTHO05D006158 4.2e-17 93.2 110 43.6
Lj4g0005197 Lotus japonicus HOM05D005306 ORTHO05D006158 5.5e-17 92.8 353 30.6
Ah.02g122180 Amaranthus hybridus HOM05D005306 ORTHO05D006158 1.6e-16 91.3 350 29.4
Peaxi162Scf00422g00025 Petunia axillaris HOM05D005306 ORTHO05D006158 1.6e-16 91.3 342 28.1
TPR.G2173 Trifolium pratense HOM05D005306 ORTHO05D006158 2.7e-16 90.5 343 29.2
Phvul.002G254400 Phaseolus vulgaris HOM05D005306 ORTHO05D006158 6.0e-16 89.4 108 42.6
Ca_17725_v3 Cicer arietinum L. HOM05D005306 ORTHO05D006158 7.9e-16 89.0 343 31.2
MBI05_g34472_MAGBIO Magnolia biondii HOM05D005306 ORTHO05D006158 1.0e-15 88.6 400 26.8
CAN.G113.1 Capsicum annuum HOM05D005306 ORTHO05D006158 6.7e-15 85.9 350 29.1
SGA_v2.0_scaffold47G17761 Striga asiatica HOM05D005306 ORTHO05D006158 6.7e-15 85.9 294 31.3
Oeu032161.1 Olea europaea HOM05D005306 ORTHO05D006158 1.1e-14 85.1 354 29.1
Oeu032163.1 Olea europaea HOM05D005306 ORTHO05D006158 1.1e-14 85.1 354 29.1
EL10Ac6g15084 Beta vulgaris HOM05D005306 ORTHO05D006158 1.5e-14 84.7 351 27.6
VMungo0251G2777 Vigna mungo HOM05D005306 ORTHO05D006158 1.1e-12 78.6 344 25.3
Os02g0752300 Oryza sativa ssp. japonica HOM05D005306 ORTHO05D006158 1.4e-12 78.2 129 36.4
CDE10G0726 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 4.1e-12 76.6 105 41.0
PSO447G0179 Papaver somniferum HOM05D005306 ORTHO05D006158 1.0e-10 72.0 108 44.4
HPP92_004303 Vanilla planifolia HOM05D005306 ORTHO05D006158 3.8e-10 70.1 195 30.8
Ah.03g142470 Amaranthus hybridus HOM05D005306 ORTHO05D006158 2.5e-09 67.4 291 28.2
Zm00001eb194230 Zea mays HOM05D005306 ORTHO05D006158 1.2e-08 65.1 94 44.7
ATR0564G355 Amborella trichopoda HOM05D005306 ORTHO05D006158 7.9e-08 62.4 115 31.3
Sc16g0005560 Simmondsia chinensis HOM05D005306 ORTHO05D006158 1.4e-07 61.6 275 28.4
unitig_27.g25362 Utricularia gibba HOM05D033148 ORTHO05D006158 6.7e-07 59.3 97 37.1


User provided reference genes

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