Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G0259 Fragaria x ananassa HOM05D006394 ORTHO05D008057 5.7e-217 757.3 383 100.0
FvH4_1g11930 Fragaria vesca HOM05D006394 ORTHO05D008057 5.4e-215 750.7 383 99.2
FAN26G2471 Fragaria x ananassa HOM05D006394 ORTHO05D008057 8.9e-178 627.1 321 98.1
FAN23G1778 Fragaria x ananassa HOM05D006394 ORTHO05D008057 1.3e-171 606.7 321 96.0
FAN28G2242 Fragaria x ananassa HOM05D006394 ORTHO05D008057 5.3e-170 601.3 321 95.3
RcHm_v2.0_Chr2g0099531 Rosa chinensis HOM05D006394 ORTHO05D008057 2.7e-158 562.4 323 89.2
Prupe.7G167400 Prunus persica HOM05D006394 ORTHO05D008057 9.1e-130 467.6 327 75.5
MD15G1246300 Malus domestica HOM05D006394 ORTHO05D008057 6.5e-120 434.9 327 71.9
CiPaw.07G057900 Carya illinoinensis HOM05D006394 ORTHO05D008057 6.3e-115 418.3 328 68.9
GSVIVG01018789001 Vitis vinifera HOM05D006394 ORTHO05D008057 5.5e-111 405.2 327 67.6
Duzib264G0144 Durio zibethinus HOM05D006394 ORTHO05D008057 7.5e-108 394.8 326 66.0
Potri.005G115100 Populus trichocarpa HOM05D006394 ORTHO05D008057 5.9e-105 385.2 325 64.9
CsaV3_6G047020 Cucumis sativus L. HOM05D006394 ORTHO05D008057 1.7e-104 383.6 328 64.0
CANSAT01G2157 Cannabis sativa HOM05D006394 ORTHO05D008057 8.5e-104 381.3 328 64.6
MELO3C007895.2 Cucumis melo HOM05D006394 ORTHO05D008057 1.1e-103 380.9 340 61.8
COL.COLO4_21919 Corchorus olitorius HOM05D006394 ORTHO05D008057 3.2e-103 379.4 326 64.7
Thecc.01G019800 Theobroma cacao HOM05D006394 ORTHO05D008057 2.1e-102 376.7 326 64.4
Lj4g0024758 Lotus japonicus HOM05D006394 ORTHO05D008057 2.7e-102 376.3 328 64.0
Glyma.16G129000 Glycine max HOM05D006394 ORTHO05D008057 1.2e-100 370.9 325 64.3
VMungo0251G2040 Vigna mungo HOM05D006394 ORTHO05D008057 1.5e-100 370.5 334 63.2
Gohir.D10G090000 Gossypium hirsutum HOM05D006394 ORTHO05D008057 3.4e-100 369.4 319 65.5
Gorai.007G195500 Gossypium raimondii HOM05D006394 ORTHO05D008057 1.7e-99 367.1 323 63.2
TWI53G2075 Tripterygium wilfordii HOM05D006394 ORTHO05D008057 2.2e-99 366.7 327 63.6
Gohir.D11G183600 Gossypium hirsutum HOM05D006394 ORTHO05D008057 2.8e-99 366.3 323 63.2
Gorai.011G098800 Gossypium raimondii HOM05D006394 ORTHO05D008057 3.7e-99 365.9 319 65.2
Eucgr.J02427 Eucalyptus grandis HOM05D006394 ORTHO05D008057 4.9e-99 365.5 329 63.8
arahy.Tifrunner.gnm1.ann1.VDMC0V Arachis hypogaea HOM05D006394 ORTHO05D008057 7.0e-98 361.7 328 61.6
Gohir.A10G098200 Gossypium hirsutum HOM05D006394 ORTHO05D008057 1.2e-97 360.9 319 64.6
arahy.Tifrunner.gnm1.ann1.SHNU8N Arachis hypogaea HOM05D006394 ORTHO05D008057 2.0e-97 360.1 328 61.3
Gohir.A11G175800 Gossypium hirsutum HOM05D006394 ORTHO05D008057 2.3e-96 356.7 323 62.8
Lalb_Chr09g0333101 Lupinus albus HOM05D006394 ORTHO05D008057 1.1e-95 354.4 326 62.0
Glyma.02G048900 Glycine max HOM05D006394 ORTHO05D008057 2.8e-94 349.7 322 62.4
Ciclev10025906m.g Citrus clementina HOM05D006394 ORTHO05D008057 6.1e-94 348.6 316 61.4
Psat4g099000 Pisum sativum HOM05D006394 ORTHO05D008057 1.5e-92 344.0 332 61.1
Ca_22372_v3 Cicer arietinum L. HOM05D006394 ORTHO05D008057 3.4e-92 342.8 328 61.0
Cc07_g10630 Coffea canephora HOM05D006394 ORTHO05D008057 3.4e-92 342.8 336 57.7
Actinidia22984 Actinidia chinensis HOM05D006394 ORTHO05D008057 9.8e-92 341.3 324 60.8
Medtr8g075970 Medicago truncatula HOM05D006394 ORTHO05D008057 1.7e-91 340.5 336 59.2
Haze_03772 Corylus avellana HOM05D006394 ORTHO05D008057 1.4e-90 337.4 286 66.4
Rhsim10G0213000 Rhododendron simsii HOM05D006394 ORTHO05D008057 3.2e-90 336.3 357 56.0
PSO541G5117 Papaver somniferum HOM05D006394 ORTHO05D008057 1.2e-89 334.3 344 59.0
PSO675G2528 Papaver somniferum HOM05D006394 ORTHO05D008057 5.9e-89 332.0 341 58.9
QL06p032614 Quercus lobata HOM05D006394 ORTHO05D008057 5.0e-88 328.9 318 53.5
PGR102G2413 Punica granatum HOM05D006394 ORTHO05D008057 4.7e-86 322.4 326 60.1
DCAR_032392 Daucus carota HOM05D006394 ORTHO05D008057 2.3e-85 320.1 331 58.0
Nn6g32361 Nelumbo nucifera HOM05D006394 ORTHO05D008057 1.2e-84 317.8 346 58.1
HanXRQChr14g0441351 Helianthus annuus HOM05D006394 ORTHO05D008057 2.0e-84 317.0 330 57.6
Solyc03g033560.3 Solanum lycopersicum HOM05D006394 ORTHO05D008057 5.8e-84 315.5 336 55.4
CAN.G1735.1 Capsicum annuum HOM05D006394 ORTHO05D008057 7.5e-84 315.1 327 56.9
MD02G1133300 Malus domestica HOM05D006394 ORTHO05D008057 1.3e-83 314.3 372 47.3
Sopen03g006350 Solanum pennellii HOM05D006394 ORTHO05D008057 1.3e-83 314.3 336 55.1
Aqoxy2G01815 Aquilegia oxysepala HOM05D006394 ORTHO05D008057 1.1e-82 311.2 344 54.7
Hund16487 Selenicereus undatus HOM05D006394 ORTHO05D008057 1.3e-80 304.3 324 56.8
CDE04G0153 Ceratophyllum demersum HOM05D006394 ORTHO05D008057 3.9e-80 302.8 350 54.3
MSTRG.2708 Avicennia marina HOM05D006394 ORTHO05D008057 3.3e-79 299.7 342 52.9
Peaxi162Scf00034g02720 Petunia axillaris HOM05D006394 ORTHO05D008057 4.3e-79 299.3 327 56.0
Sed0000291 Sechium edule HOM05D006394 ORTHO05D008057 1.8e-77 293.9 315 47.3
ECA238G0838 Erigeron canadensis HOM05D006394 ORTHO05D008057 4.0e-77 292.7 332 54.2
Lj2C467T3 Lonicera japonica HOM05D006394 ORTHO05D008057 8.9e-77 291.6 326 48.2
Cpa.g.sc6.241 Carica papaya HOM05D006394 ORTHO05D008057 3.4e-76 289.7 314 49.4
Hma1.2p1_0743F.1_g211600 Hydrangea macrophylla HOM05D006394 ORTHO05D008057 7.5e-76 288.5 315 48.6
ClCG01G020230 Citrullus lanatus HOM05D006394 ORTHO05D008057 1.7e-72 277.3 300 49.0
THA.LOC104804261 Tarenaya hassleriana HOM05D006394 ORTHO05D008057 6.6e-72 275.4 318 53.1
Phvul.003G262300 Phaseolus vulgaris HOM05D006394 ORTHO05D008057 1.6e-70 270.8 249 56.6
vmacro21917 Vaccinium macrocarpon HOM05D006394 ORTHO05D008057 3.6e-70 269.6 328 45.1
HPP92_007113 Vanilla planifolia HOM05D006394 ORTHO05D008057 3.6e-70 269.6 347 50.7
CSS0039773 Camellia sinensis var. sinensis HOM05D006394 ORTHO05D008057 5.2e-69 265.8 323 45.5
Sabra05G0094200 Salix brachista HOM05D006394 ORTHO05D008057 1.5e-68 264.2 300 47.0
Sc16g0002110 Simmondsia chinensis HOM05D006394 ORTHO05D008057 1.5e-68 264.2 311 45.3
Dinv33624 Davidia involucrata HOM05D006394 ORTHO05D008057 1.3e-67 261.2 260 62.7
Sp3g31400 Schrenkiella parvula HOM05D006394 ORTHO05D008057 3.7e-67 259.6 320 51.6
AT2G17975 Arabidopsis thaliana HOM05D006394 ORTHO05D008057 6.4e-67 258.8 320 50.3
Thhalv10022807m.g Eutrema salsugineum HOM05D006394 ORTHO05D008057 1.4e-66 257.7 318 51.3
AL3G51010 Arabidopsis lyrata HOM05D006394 ORTHO05D008057 2.4e-66 256.9 320 50.6
Migut.H01156 Erythranthe guttata HOM05D006394 ORTHO05D008057 3.2e-66 256.5 332 51.2
Aa31LG8G15150 Aethionema arabicum HOM05D006394 ORTHO05D008057 5.4e-66 255.8 314 51.3
BcaB03g16582 Brassica carinata HOM05D006394 ORTHO05D008057 5.4e-66 255.8 321 50.5
C07p05000 Brassica napus HOM05D006394 ORTHO05D008057 2.1e-65 253.8 318 51.3
Manes.01G145300 Manihot esculenta HOM05D006394 ORTHO05D008057 4.6e-65 252.7 238 56.3
CARHR108450 Cardamine hirsuta HOM05D006394 ORTHO05D008057 7.8e-65 251.9 320 49.7
BcaC06g36350 Brassica carinata HOM05D006394 ORTHO05D008057 5.1e-64 249.2 318 50.9
Actinidia28701 Actinidia chinensis HOM05D006394 ORTHO05D008057 6.6e-64 248.8 312 44.6
BolC7t40901H Brassica oleracea HOM05D006394 ORTHO05D008057 9.6e-63 245.0 319 50.8
Nitab4.5_0006119g0030 Nicotiana tabacum HOM05D006394 ORTHO05D008057 2.8e-62 243.4 303 51.8
Carub.0003s3211 Capsella rubella HOM05D006394 ORTHO05D008057 3.6e-62 243.0 322 48.8
TAR365G0979 Trochodendron aralioides HOM05D006394 ORTHO05D008057 3.6e-62 243.0 267 50.6
TPR.G30047 Trifolium pratense HOM05D006394 ORTHO05D008057 6.8e-61 238.8 326 42.9
unitig_22.g6143 Utricularia gibba HOM05D006394 ORTHO05D008057 5.8e-60 235.7 376 45.2
A07p02700 Brassica napus HOM05D006394 ORTHO05D008057 9.9e-60 235.0 318 49.4
PGSC0003DMG400022563 Solanum tuberosum HOM05D006394 ORTHO05D008057 1.1e-58 231.5 258 46.5
BraA07t28070Z Brassica rapa HOM05D006394 ORTHO05D008057 2.4e-58 230.3 319 49.2
Nitab4.5_0000438g0030 Nicotiana tabacum HOM05D006394 ORTHO05D008057 3.2e-58 229.9 356 44.4
EL10As8g23834 Beta vulgaris HOM05D006394 ORTHO05D008057 6.0e-57 225.7 281 53.4
TAR133G0002 Trochodendron aralioides HOM05D006394 ORTHO05D008057 1.4e-53 214.5 251 48.2
SGA_v2.0_scaffold137G35082 Striga asiatica HOM05D006394 ORTHO05D008057 5.8e-52 209.1 251 55.0
SalBow3G1310 Salvia bowleyana HOM05D006394 ORTHO05D008057 9.9e-52 208.4 336 36.6
SMO347G0374 Selaginella moellendorffii HOM05D006394 ORTHO05D008057 6.0e-49 199.1 335 45.7
Os04g0110600 Oryza sativa ssp. japonica HOM05D006394 ORTHO05D008057 1.3e-46 191.4 264 42.8
Zm00001eb418470 Zea mays HOM05D006394 ORTHO05D008057 2.1e-41 174.1 266 41.0
Zm00001eb411540 Zea mays HOM05D006394 ORTHO05D008057 5.1e-40 169.5 272 39.3
Zm00001eb089410 Zea mays HOM05D006394 ORTHO05D008057 8.1e-38 162.2 269 39.0
Hma1.2p1_0589F.1_g184775 Hydrangea macrophylla HOM05D006394 ORTHO05D008057 4.6e-33 146.4 186 44.1
Actinidia31001 Actinidia chinensis HOM05D006394 ORTHO05D008057 2.1e-30 137.5 155 46.5
Lsat_1_v5_gn_4_146641 Lactuca sativa HOM05D006394 ORTHO05D008057 8.2e-30 135.6 297 33.3
unitig_8.g2966 Utricularia gibba HOM05D006394 ORTHO05D008057 5.9e-28 129.4 303 32.0
CDE02G2139 Ceratophyllum demersum HOM05D006394 ORTHO05D008057 3.7e-22 110.2 132 47.7
ATR0421G001 Amborella trichopoda HOM05D006394 ORTHO05D008057 2.4e-21 107.5 49 91.8
CSS0034598 Camellia sinensis var. sinensis HOM05D006394 ORTHO05D008057 7.7e-20 102.4 47 91.5
CBR_g22407 Chara braunii HOM05D006394 ORTHO05D008057 6.5e-19 99.4 164 37.8
Sopen04g013660 Solanum pennellii HOM05D006394 ORTHO05D008057 2.6e-15 87.4 76 53.9
Sopen10g011120 Solanum pennellii HOM05D006394 ORTHO05D008057 4.5e-12 76.6 68 55.9
MBI05_g15342_MAGBIO Magnolia biondii HOM05D006394 ORTHO05D008057 1.7e-11 74.7 88 46.6
Mapoly0019s0131 Marchantia polymorpha HOM05D001564 ORTHO05D001439 1.0e-08 65.5 157 30.6
Os02g0203700 Oryza sativa ssp. japonica HOM05D001564 ORTHO05D001439 1.0e-08 65.5 178 30.3
Nitab4.5_0000151g0010 Nicotiana tabacum HOM05D001564 ORTHO05D001439 1.8e-08 64.7 188 26.1
vmacro05191 Vaccinium macrocarpon HOM05D001564 ORTHO05D001439 3.0e-08 63.9 162 26.5
Solyc08g067180.4 Solanum lycopersicum HOM05D001564 ORTHO05D001439 3.9e-08 63.5 166 28.3
CsaV3_4G001400 Cucumis sativus L. HOM05D001564 ORTHO05D001439 5.2e-08 63.2 178 28.1
Peaxi162Scf00341g00012 Petunia axillaris HOM05D001564 ORTHO05D001439 5.2e-08 63.2 175 29.7
Peaxi162Scf00641g00018 Petunia axillaris HOM05D001564 ORTHO05D001439 5.2e-08 63.2 156 29.5
CANSAT11G0701 Cannabis sativa HOM05D001564 ORTHO05D001439 6.7e-08 62.8 150 26.0
PGSC0003DMG400007381 Solanum tuberosum HOM05D001564 ORTHO05D001439 6.7e-08 62.8 181 27.6
MD02G1035800 Malus domestica HOM05D001564 ORTHO05D001439 8.8e-08 62.4 146 28.1
Nn8g39385 Nelumbo nucifera HOM05D001564 ORTHO05D001439 8.8e-08 62.4 163 28.2
Sopen08g021120 Solanum pennellii HOM05D001564 ORTHO05D001439 8.8e-08 62.4 167 29.3
MELO3C017900.2 Cucumis melo HOM05D001564 ORTHO05D001439 1.1e-07 62.0 178 28.1
MSTRG.19608 Avicennia marina HOM05D001564 ORTHO05D001439 2.0e-07 61.2 153 26.8
Oeu048467.1 Olea europaea HOM05D006394 ORTHO05D008057 2.0e-07 61.2 95 37.9
Peaxi162Scf00984g00119 Petunia axillaris HOM05D001564 ORTHO05D001439 2.0e-07 61.2 149 33.6
Gohir.A05G125100 Gossypium hirsutum HOM05D001564 ORTHO05D001439 2.6e-07 60.8 177 27.1
Sed0001195 Sechium edule HOM05D001564 ORTHO05D001439 3.3e-07 60.5 179 29.1
CAN.G348.2 Capsicum annuum HOM05D001564 ORTHO05D001439 4.4e-07 60.1 181 27.1
MD15G1176000 Malus domestica HOM05D001564 ORTHO05D001439 4.4e-07 60.1 146 28.1
TWI75G1763 Tripterygium wilfordii HOM05D001564 ORTHO05D001439 4.4e-07 60.1 190 28.4
Atru.chr1.3091 Acer truncatum HOM05D001564 ORTHO05D001439 5.7e-07 59.7 168 29.2
ClCG07G012800 Citrullus lanatus HOM05D001564 ORTHO05D001439 5.7e-07 59.7 178 28.1
PGR031G3637 Punica granatum HOM05D001564 ORTHO05D001439 5.7e-07 59.7 178 26.4
A07p17810 Brassica napus HOM05D001564 ORTHO05D001439 7.4e-07 59.3 155 30.3
BraA07t29501Z Brassica rapa HOM05D001564 ORTHO05D001439 7.4e-07 59.3 155 30.3
Solyc10g038030.3 Solanum lycopersicum HOM05D006394 ORTHO05D008057 7.4e-07 59.3 114 32.5
Sopen04g013620 Solanum pennellii HOM05D006394 ORTHO05D008057 7.4e-07 59.3 72 44.4
CiPaw.08G012900 Carya illinoinensis HOM05D001564 ORTHO05D001439 9.7e-07 58.9 175 26.3
TAR383G0790 Trochodendron aralioides HOM05D001564 ORTHO05D001439 9.7e-07 58.9 151 27.8
Zm00001eb205550 Zea mays HOM05D001564 ORTHO05D001439 9.7e-07 58.9 150 26.0
BcaC02g10834 Brassica carinata HOM05D001564 ORTHO05D001439 1.3e-06 58.5 152 30.3
C04p24640 Brassica napus HOM05D001564 ORTHO05D001439 1.3e-06 58.5 152 30.3
BolC4t23970H Brassica oleracea HOM05D001564 ORTHO05D001439 1.3e-06 58.5 152 30.3
Glyma.05G008700 Glycine max HOM05D001564 ORTHO05D001439 1.3e-06 58.5 146 27.4
Potri.006G149900 Populus trichocarpa HOM05D001564 ORTHO05D001439 1.3e-06 58.5 153 30.1
Sed0024738 Sechium edule HOM05D001564 ORTHO05D001439 1.3e-06 58.5 187 26.7
TWI34G0224 Tripterygium wilfordii HOM05D001564 ORTHO05D001439 1.3e-06 58.5 152 26.3
CSS0036181 Camellia sinensis var. sinensis HOM05D001564 ORTHO05D001439 1.7e-06 58.2 190 26.8
CBR_g82288 Chara braunii HOM05D006394 ORTHO05D008057 1.7e-06 58.2 32 65.6
Gohir.D05G126100 Gossypium hirsutum HOM05D001564 ORTHO05D001439 1.7e-06 58.2 174 25.3
Gorai.009G130100 Gossypium raimondii HOM05D001564 ORTHO05D001439 1.7e-06 58.2 174 25.3
Peaxi162Scf00984g10021 Petunia axillaris HOM05D001564 ORTHO05D001439 1.7e-06 58.2 161 31.1
GSVIVG01035819001 Vitis vinifera HOM05D001564 ORTHO05D001439 1.7e-06 58.2 158 27.8
FAN09G2896 Fragaria x ananassa HOM05D001564 ORTHO05D001439 2.2e-06 57.8 186 28.5
Sp4g08900 Schrenkiella parvula HOM05D001564 ORTHO05D001439 2.2e-06 57.8 152 30.3
Pp3c4_8110 Physcomitrium patens HOM05D004124 ORTHO05D004779 2.8e-06 57.4 341 23.5
SHI18574 Sapria himalayana HOM05D001564 ORTHO05D001439 2.8e-06 57.4 167 27.5
BcaNung07111 Brassica carinata HOM05D001564 ORTHO05D001439 3.7e-06 57.0 155 27.7
C02p59490 Brassica napus HOM05D001564 ORTHO05D001439 3.7e-06 57.0 155 27.7
CSS0037183 Camellia sinensis var. sinensis HOM05D001564 ORTHO05D001439 3.7e-06 57.0 190 26.8
Lj8C624T10 Lonicera japonica HOM05D001564 ORTHO05D001439 3.7e-06 57.0 154 27.3
Prupe.7G239400 Prunus persica HOM05D001564 ORTHO05D001439 3.7e-06 57.0 146 27.4
Thecc.09G149700 Theobroma cacao HOM05D001564 ORTHO05D001439 3.7e-06 57.0 158 28.5
CDE04G3109 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 4.8e-06 56.6 232 27.6
MELO3C023401.2 Cucumis melo HOM05D001564 ORTHO05D001439 4.8e-06 56.6 187 26.7
FvH4_6g30320 Fragaria vesca HOM05D001564 ORTHO05D001439 4.8e-06 56.6 166 25.3
FAN05G3054 Fragaria x ananassa HOM05D001564 ORTHO05D001439 4.8e-06 56.6 166 25.3
MELO3C026642.2 Cucumis melo HOM05D001564 ORTHO05D001439 6.3e-06 56.2 153 28.1
CsaV3_1G029820 Cucumis sativus L. HOM05D001564 ORTHO05D001439 6.3e-06 56.2 153 28.1
Duzib192G0024 Durio zibethinus HOM05D001564 ORTHO05D001439 6.3e-06 56.2 151 27.8
Lsat_1_v5_gn_5_98101 Lactuca sativa HOM05D001564 ORTHO05D001439 6.3e-06 56.2 159 29.6
unitig_748.g7371 Utricularia gibba HOM05D001564 ORTHO05D001439 6.3e-06 56.2 155 27.1
Carub.0006s2335 Capsella rubella HOM05D001564 ORTHO05D001439 8.2e-06 55.8 185 26.5
CiPaw.04G170100 Carya illinoinensis HOM05D001564 ORTHO05D001439 8.2e-06 55.8 146 24.7


User provided reference genes

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