Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G0163 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.7e-125 452.6 221 100.0
FAN26G1713 Fragaria x ananassa HOM05D005053 ORTHO05D006206 5.6e-124 447.6 221 99.5
FAN23G1215 Fragaria x ananassa HOM05D005053 ORTHO05D006206 7.3e-124 447.2 221 99.1
FvH4_1g14960 Fragaria vesca HOM05D005053 ORTHO05D006206 1.2e-123 446.4 221 99.1
FAN28G1734 Fragaria x ananassa HOM05D005053 ORTHO05D006206 3.1e-122 441.8 222 98.6
RcHm_v2.0_Chr2g0104011 Rosa chinensis HOM05D005053 ORTHO05D006206 1.1e-116 423.3 221 94.1
MD02G1163200 Malus domestica HOM05D005053 ORTHO05D006206 1.2e-110 403.3 221 89.1
Atru.chr3.440 Acer truncatum HOM05D005053 ORTHO05D006206 6.9e-106 387.5 221 85.1
COL.COLO4_11341 Corchorus olitorius HOM05D005053 ORTHO05D006206 6.9e-106 387.5 221 85.5
Cpa.g.sc6.408 Carica papaya HOM05D005053 ORTHO05D006206 9.9e-105 383.6 221 86.0
Cfa003962 Carpinus fangiana HOM05D005053 ORTHO05D006206 9.9e-105 383.6 221 84.2
Glyma.17G180900 Glycine max HOM05D005053 ORTHO05D006206 1.7e-104 382.9 221 84.6
Manes.13G129200 Manihot esculenta HOM05D005053 ORTHO05D006206 2.2e-104 382.5 221 84.2
PGR102G2816 Punica granatum HOM05D005053 ORTHO05D006206 3.8e-104 381.7 221 83.7
Aqoxy6G00906 Aquilegia oxysepala HOM05D005053 ORTHO05D006206 4.9e-104 381.3 221 83.7
Gorai.008G072800 Gossypium raimondii HOM05D005053 ORTHO05D006206 4.9e-104 381.3 221 83.7
Lalb_Chr09g0333681 Lupinus albus HOM05D005053 ORTHO05D006206 1.4e-103 379.8 221 82.8
MD15G1276200 Malus domestica HOM05D005053 ORTHO05D006206 1.4e-103 379.8 221 84.2
Thecc.01G049700 Theobroma cacao HOM05D005053 ORTHO05D006206 2.4e-103 379.0 222 83.8
Phvul.003G248000 Phaseolus vulgaris HOM05D005053 ORTHO05D006206 2.1e-102 375.9 221 83.3
Ca_22210_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 3.5e-102 375.2 221 82.4
VMungo0251G0766 Vigna mungo HOM05D005053 ORTHO05D006206 3.5e-102 375.2 221 84.2
Lj4g0026236 Lotus japonicus HOM05D005053 ORTHO05D006206 4.6e-102 374.8 221 82.4
Actinidia36514 Actinidia chinensis HOM05D005053 ORTHO05D006206 6.0e-102 374.4 221 84.6
arahy.Tifrunner.gnm1.ann1.VE46QQ Arachis hypogaea HOM05D005053 ORTHO05D006206 7.9e-102 374.0 221 83.7
HanXRQChr14g0448331 Helianthus annuus HOM05D005053 ORTHO05D006206 2.3e-101 372.5 221 82.8
Lsat_1_v5_gn_2_86920 Lactuca sativa HOM05D005053 ORTHO05D006206 2.3e-101 372.5 221 82.4
ECA238G1636 Erigeron canadensis HOM05D005053 ORTHO05D006206 3.9e-101 371.7 221 82.4
arahy.Tifrunner.gnm1.ann1.IMYE37 Arachis hypogaea HOM05D005053 ORTHO05D006206 5.1e-101 371.3 221 82.8
HanXRQChr07g0199901 Helianthus annuus HOM05D005053 ORTHO05D006206 5.1e-101 371.3 221 82.4
Ciclev10026393m.g Citrus clementina HOM05D005053 ORTHO05D006206 8.7e-101 370.5 239 77.8
Actinidia12070 Actinidia chinensis HOM05D005053 ORTHO05D006206 1.9e-100 369.4 221 83.3
GSVIVG01005060001 Vitis vinifera HOM05D005053 ORTHO05D006206 3.3e-100 368.6 221 81.4
Cc07_g05640 Coffea canephora HOM05D005053 ORTHO05D006206 4.3e-100 368.2 221 81.9
Medtr8g079240 Medicago truncatula HOM05D005053 ORTHO05D006206 7.4e-100 367.5 221 80.1
CSS0024932 Camellia sinensis var. sinensis HOM05D005053 ORTHO05D006206 1.6e-99 366.3 221 81.4
vmacro17912 Vaccinium macrocarpon HOM05D005053 ORTHO05D006206 6.2e-99 364.4 221 79.6
TAR376G0500 Trochodendron aralioides HOM05D005053 ORTHO05D006206 4.0e-98 361.7 221 80.5
ClCG01G016600 Citrullus lanatus HOM05D005053 ORTHO05D006206 5.3e-98 361.3 222 78.8
MELO3C007534.2 Cucumis melo HOM05D005053 ORTHO05D006206 5.3e-98 361.3 222 78.8
CsaV3_6G042980 Cucumis sativus L. HOM05D005053 ORTHO05D006206 1.2e-97 360.1 222 78.4
PSO675G4006 Papaver somniferum HOM05D005053 ORTHO05D006206 1.5e-97 359.8 221 79.2
THA.LOC104819229 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 2.0e-97 359.4 221 78.7
PSO541G4895 Papaver somniferum HOM05D005053 ORTHO05D006206 3.4e-97 358.6 221 79.2
AUR62001971 Chenopodium quinoa HOM05D005053 ORTHO05D006206 1.0e-96 357.1 221 79.2
Migut.H00475 Erythranthe guttata HOM05D005053 ORTHO05D006206 1.0e-96 357.1 221 79.6
Hma1.2p1_0687F.1_g203520 Hydrangea macrophylla HOM05D005053 ORTHO05D006206 1.0e-96 357.1 221 80.5
Nn5g29376 Nelumbo nucifera HOM05D005053 ORTHO05D006206 2.9e-96 355.5 221 78.7
Nn6g32115 Nelumbo nucifera HOM05D005053 ORTHO05D006206 4.9e-96 354.8 222 77.5
Potri.007G037800 Populus trichocarpa HOM05D005053 ORTHO05D006206 4.9e-96 354.8 221 79.2
Sed0021889 Sechium edule HOM05D005053 ORTHO05D006206 4.9e-96 354.8 221 77.4
EL10Ac6g15144 Beta vulgaris HOM05D005053 ORTHO05D006206 3.2e-95 352.1 221 78.7
Hund13583 Selenicereus undatus HOM05D005053 ORTHO05D006206 3.2e-95 352.1 221 78.3
CARHR280750 Cardamine hirsuta HOM05D005053 ORTHO05D006206 4.2e-95 351.7 221 79.2
Sc03g0001310 Simmondsia chinensis HOM05D005053 ORTHO05D006206 4.2e-95 351.7 221 78.7
AL8G44450 Arabidopsis lyrata HOM05D005053 ORTHO05D006206 5.5e-95 351.3 221 78.3
Eucgr.H01988 Eucalyptus grandis HOM05D005053 ORTHO05D006206 9.3e-95 350.5 221 76.0
Carub.0008s2757 Capsella rubella HOM05D005053 ORTHO05D006206 1.2e-94 350.1 221 77.8
THA.LOC104821262 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 6.0e-94 347.8 221 76.0
MSTRG.15402 Avicennia marina HOM05D005053 ORTHO05D006206 1.3e-93 346.7 230 76.5
AT5G66930 Arabidopsis thaliana HOM05D005053 ORTHO05D006206 1.8e-93 346.3 221 77.8
Aa31LG1G15480 Aethionema arabicum HOM05D005053 ORTHO05D006206 2.3e-93 345.9 221 76.5
QL06p043337 Quercus lobata HOM05D005053 ORTHO05D006206 2.3e-93 345.9 197 85.3
Oeu004887.1 Olea europaea HOM05D005053 ORTHO05D006206 3.0e-93 345.5 221 78.7
CAN.G470.7 Capsicum annuum HOM05D005053 ORTHO05D006206 1.5e-92 343.2 221 77.4
CiPaw.01G025900 Carya illinoinensis HOM05D005053 ORTHO05D006206 7.4e-92 340.9 197 83.2
unitig_736.g22369 Utricularia gibba HOM05D005053 ORTHO05D006206 7.4e-92 340.9 223 77.1
Nitab4.5_0000806g0140 Nicotiana tabacum HOM05D005053 ORTHO05D006206 9.6e-92 340.5 221 77.4
Solyc02g065180.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 9.6e-92 340.5 221 77.8
Sopen02g015310 Solanum pennellii HOM05D005053 ORTHO05D006206 9.6e-92 340.5 221 77.8
Sp2g29730 Schrenkiella parvula HOM05D005053 ORTHO05D006206 3.7e-91 338.6 221 75.6
Haze_15460 Corylus avellana HOM05D005053 ORTHO05D006206 4.8e-91 338.2 200 83.0
Gohir.A12G069100 Gossypium hirsutum HOM05D005053 ORTHO05D006206 6.3e-91 337.8 195 84.1
Gohir.D12G090200 Gossypium hirsutum HOM05D005053 ORTHO05D006206 1.4e-90 336.7 195 83.1
SGA_v2.0_scaffold27G11440 Striga asiatica HOM05D005053 ORTHO05D006206 1.2e-89 333.6 222 75.7
SGA_v2.0_scaffold204G41608 Striga asiatica HOM05D005053 ORTHO05D006206 1.5e-89 333.2 222 75.7
BcaB04g20086 Brassica carinata HOM05D005053 ORTHO05D006206 4.5e-89 331.6 222 73.9
Dinv29944 Davidia involucrata HOM05D005053 ORTHO05D006206 1.0e-88 330.5 199 82.4
Duzib264G0045 Durio zibethinus HOM05D005053 ORTHO05D006206 1.0e-88 330.5 195 82.1
Peaxi162Scf00049g01010 Petunia axillaris HOM05D005053 ORTHO05D006206 1.7e-88 329.7 234 72.6
Ca_22228_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 8.4e-88 327.4 195 81.0
Thhalv10005270m.g Eutrema salsugineum HOM05D005053 ORTHO05D006206 8.4e-88 327.4 213 76.1
TAR628G0491 Trochodendron aralioides HOM05D005053 ORTHO05D006206 8.4e-88 327.4 195 81.0
Duzib264G0685 Durio zibethinus HOM05D005053 ORTHO05D006206 1.1e-87 327.0 195 81.5
Rhsim08G0104900 Rhododendron simsii HOM05D005053 ORTHO05D006206 1.2e-86 323.6 301 59.1
BcaC06g34767 Brassica carinata HOM05D005053 ORTHO05D006206 2.7e-86 322.4 224 73.7
C07p24820 Brassica napus HOM05D005053 ORTHO05D006206 2.7e-86 322.4 224 73.7
BraA07t29424Z Brassica rapa HOM05D005053 ORTHO05D006206 2.7e-86 322.4 224 74.1
Duzib147G0596 Durio zibethinus HOM05D005053 ORTHO05D006206 2.7e-86 322.4 195 81.5
TWI09G0689 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 2.7e-86 322.4 199 78.4
BraA09t36613Z Brassica rapa HOM05D005053 ORTHO05D006206 7.9e-86 320.9 222 71.6
BcaC04g23174 Brassica carinata HOM05D005053 ORTHO05D006206 1.0e-85 320.5 223 72.2
A09p09640 Brassica napus HOM05D005053 ORTHO05D006206 1.0e-85 320.5 222 72.1
C09p11390 Brassica napus HOM05D005053 ORTHO05D006206 1.0e-85 320.5 223 72.2
A07p16970 Brassica napus HOM05D005053 ORTHO05D006206 1.3e-85 320.1 224 73.2
TWI53G1273 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 1.8e-85 319.7 196 79.1
BolC9t54027H Brassica oleracea HOM05D005053 ORTHO05D006206 2.5e-84 315.8 224 71.9
ATR0225G009 Amborella trichopoda HOM05D005053 ORTHO05D006206 4.3e-84 315.1 222 71.6
BcaB02g09970 Brassica carinata HOM05D005053 ORTHO05D006206 7.4e-84 314.3 224 72.3
AUR62003832 Chenopodium quinoa HOM05D005053 ORTHO05D006206 1.3e-83 313.5 195 79.0
HPP92_024294 Vanilla planifolia HOM05D005053 ORTHO05D006206 1.6e-83 313.2 223 72.2
HPP92_024303 Vanilla planifolia HOM05D005053 ORTHO05D006206 1.6e-83 313.2 223 72.2
SEGI_13826 Sequoiadendron giganteum HOM05D005053 ORTHO05D006206 1.4e-82 310.1 221 69.7
Ah.02g124120 Amaranthus hybridus HOM05D005053 ORTHO05D006206 3.1e-82 308.9 212 71.7
CiPaw.02G011700 Carya illinoinensis HOM05D005053 ORTHO05D006206 1.3e-80 303.5 221 69.2
MBI16_g19902_MAGBIO Magnolia biondii HOM05D005053 ORTHO05D006206 2.2e-80 302.8 183 78.1
RhsimUnG0070600 Rhododendron simsii HOM05D005053 ORTHO05D006206 2.2e-80 302.8 290 57.9
BolC7t43007H Brassica oleracea HOM05D005053 ORTHO05D006206 2.5e-79 299.3 213 72.3
Mapoly0011s0084 Marchantia polymorpha HOM05D005053 ORTHO05D006206 1.4e-77 293.5 221 67.4
Prupe.7G140800 Prunus persica HOM05D005053 ORTHO05D006206 8.8e-77 290.8 164 86.0
Sabra07G0034100 Salix brachista HOM05D005053 ORTHO05D006206 1.1e-76 290.4 198 73.7
Nitab4.5_0009901g0010 Nicotiana tabacum HOM05D005053 ORTHO05D006206 3.3e-76 288.9 206 72.3
Peaxi162Scf00993g00120 Petunia axillaris HOM05D005053 ORTHO05D006206 3.3e-76 288.9 194 73.7
Os12g0428200 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 2.0e-73 279.6 221 64.3
SMO271G0126 Selaginella moellendorffii HOM05D005053 ORTHO05D006206 7.7e-73 277.7 221 62.9
BcaC03g18393 Brassica carinata HOM05D005053 ORTHO05D006206 1.9e-71 273.1 227 63.4
C02p64670 Brassica napus HOM05D005053 ORTHO05D006206 1.9e-71 273.1 227 63.4
Solyc02g090330.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 1.9e-71 273.1 215 64.7
Dinv39902 Davidia involucrata HOM05D005053 ORTHO05D006206 4.2e-71 271.9 173 75.7
PGSC0003DMG400010070 Solanum tuberosum HOM05D005053 ORTHO05D006206 1.6e-70 270.0 215 65.1
Lj7A44T18 Lonicera japonica HOM05D005053 ORTHO05D006206 2.7e-70 269.2 180 76.1
DCAR_025697 Daucus carota HOM05D005053 ORTHO05D006206 6.1e-70 268.1 170 78.2
BolC2t12528H Brassica oleracea HOM05D005053 ORTHO05D006206 7.9e-70 267.7 222 63.5
Zm00001eb184240 Zea mays HOM05D005053 ORTHO05D006206 5.3e-66 255.0 221 60.2
Psat4g088960 Pisum sativum HOM05D005053 ORTHO05D006206 9.1e-66 254.2 159 79.9
Pp3c11_5110 Physcomitrium patens HOM05D005053 ORTHO05D006206 3.5e-65 252.3 222 58.1
AagrBONN_evm.TU.Sc2ySwM_344.1821 Anthoceros agrestis HOM05D005053 ORTHO05D006206 5.5e-63 245.0 197 65.0
CBR_g23008 Chara braunii HOM05D005053 ORTHO05D006206 1.6e-62 243.4 222 55.4
AagrBONN_evm.TU.Sc2ySwM_344.1822 Anthoceros agrestis HOM05D005053 ORTHO05D006206 8.0e-62 241.1 223 56.5
Os12g0446700 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 1.4e-61 240.4 195 64.1
Nitab4.5_0002157g0070 Nicotiana tabacum HOM05D005053 ORTHO05D006206 2.8e-59 232.6 170 69.4
Ah.03g144090 Amaranthus hybridus HOM05D005053 ORTHO05D006206 2.7e-57 226.1 197 62.4
Sopen02g035010 Solanum pennellii HOM05D005053 ORTHO05D006206 2.9e-48 196.1 163 62.6
AagrBONN_evm.TU.Sc2ySwM_369.468 Anthoceros agrestis HOM05D000050 ORTHO05D000771 6.5e-48 194.9 221 49.3
Psat4g089040 Pisum sativum HOM05D005053 ORTHO05D006206 9.5e-47 191.0 184 56.0
CDE02G0556 Ceratophyllum demersum HOM05D005053 ORTHO05D006206 1.5e-44 183.7 153 59.5
TPR.G40637 Trifolium pratense HOM05D005053 ORTHO05D006206 9.2e-42 174.5 93 84.9
TPR.G672 Trifolium pratense HOM05D005053 ORTHO05D006206 5.7e-36 155.2 100 77.0
FAN19G1388 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.7e-35 153.7 84 91.7
SGA_v2.0_scaffold15G07238 Striga asiatica HOM05D005053 ORTHO05D006206 4.9e-35 152.1 250 41.6
MCO07G250 Micromonas commoda HOM05D005053 ORTHO05D006206 8.3e-35 151.4 222 36.5
Cre07.g334700 Chlamydomonas reinhardtii HOM05D005053 ORTHO05D006206 5.0e-32 142.1 230 37.8
Zm00001eb184160 Zea mays HOM05D005053 ORTHO05D006206 2.3e-29 133.3 87 70.1
PRCOL_00006110 Prasinoderma coloniale HOM05D005053 ORTHO05D006206 9.8e-28 127.9 220 36.8
Ciclev10027037m.g Citrus clementina HOM05D005053 ORTHO05D006206 3.9e-24 115.9 84 70.2
Nitab4.5_0003750g0060 Nicotiana tabacum HOM05D005053 ORTHO05D006206 6.6e-24 115.2 142 45.1
AUR62028910 Chenopodium quinoa HOM05D005053 ORTHO05D006206 1.7e-19 100.5 94 56.4
CAN.G836.41 Capsicum annuum HOM05D005053 ORTHO05D024763 9.9e-12 74.7 144 38.9
Cfa024505 Carpinus fangiana HOM05D005053 ORTHO05D124968 1.0e-08 64.7 205 25.4


User provided reference genes

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