Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G0135 Fragaria x ananassa HOM05D005825 ORTHO05D006483 2.1e-180 635.6 321 100.0
FvH4_1g03280 Fragaria vesca HOM05D005825 ORTHO05D006483 3.6e-180 634.8 321 99.7
FAN23G1198 Fragaria x ananassa HOM05D005825 ORTHO05D006483 4.4e-178 627.9 321 98.8
FAN26G2420 Fragaria x ananassa HOM05D005825 ORTHO05D006483 6.3e-177 624.0 321 98.1
FAN28G2006 Fragaria x ananassa HOM05D005825 ORTHO05D006483 5.9e-175 617.5 322 97.8
RcHm_v2.0_Chr2g0088431 Rosa chinensis HOM05D005825 ORTHO05D006483 1.4e-160 569.7 328 89.3
MD02G1032800 Malus domestica HOM05D005825 ORTHO05D006483 5.3e-131 471.5 321 73.8
Prupe.7G242700 Prunus persica HOM05D005825 ORTHO05D006483 1.5e-130 469.9 325 73.8
vmacro20556 Vaccinium macrocarpon HOM05D005825 ORTHO05D006483 2.4e-128 462.6 327 72.8
CANSAT11G1244 Cannabis sativa HOM05D005825 ORTHO05D006483 3.2e-128 462.2 325 73.8
Dinv36528 Davidia involucrata HOM05D005825 ORTHO05D006483 3.5e-127 458.8 326 72.1
Cfa003372 Carpinus fangiana HOM05D005825 ORTHO05D006483 6.0e-127 458.0 328 73.5
MELO3C004508.2 Cucumis melo HOM05D005825 ORTHO05D006483 1.5e-125 453.4 328 71.3
Ca_21683_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 1.9e-125 453.0 326 72.7
CsaV3_2G002850 Cucumis sativus L. HOM05D005825 ORTHO05D006483 9.6e-125 450.7 333 70.6
TWI34G0282 Tripterygium wilfordii HOM05D005825 ORTHO05D006483 1.3e-124 450.3 327 70.3
DCAR_009187 Daucus carota HOM05D005825 ORTHO05D006483 1.6e-124 449.9 323 70.6
Cpa.g.sc75.29 Carica papaya HOM05D005825 ORTHO05D006483 2.1e-124 449.5 325 71.7
Rhsim01G0070600 Rhododendron simsii HOM05D005825 ORTHO05D006483 2.1e-124 449.5 328 70.1
Sp4g09150 Schrenkiella parvula HOM05D005825 ORTHO05D006483 8.1e-124 447.6 322 69.9
Sed0008025 Sechium edule HOM05D005825 ORTHO05D006483 8.1e-124 447.6 327 70.9
ClCG11G003030 Citrullus lanatus HOM05D005825 ORTHO05D006483 2.4e-123 446.0 325 71.7
CiPaw.03G244100 Carya illinoinensis HOM05D005825 ORTHO05D006483 3.1e-123 445.7 324 71.6
Gorai.010G064100 Gossypium raimondii HOM05D005825 ORTHO05D006483 3.1e-123 445.7 326 71.5
Hund09127 Selenicereus undatus HOM05D005825 ORTHO05D006483 5.3e-123 444.9 328 70.7
Gohir.D06G054601 Gossypium hirsutum HOM05D005825 ORTHO05D006483 6.9e-123 444.5 326 71.2
Ciclev10008932m.g Citrus clementina HOM05D005825 ORTHO05D006483 1.2e-122 443.7 323 70.3
AUR62013360 Chenopodium quinoa HOM05D005825 ORTHO05D006483 1.5e-122 443.4 281 78.3
Lalb_Chr13g0301881 Lupinus albus HOM05D005825 ORTHO05D006483 2.0e-122 443.0 326 71.5
AL4G19680 Arabidopsis lyrata HOM05D005825 ORTHO05D006483 2.6e-122 442.6 323 70.3
Carub.0004s0696 Capsella rubella HOM05D005825 ORTHO05D006483 3.4e-122 442.2 322 70.2
Thecc.09G126400 Theobroma cacao HOM05D005825 ORTHO05D006483 3.4e-122 442.2 326 70.9
Atru.chr7.1162 Acer truncatum HOM05D005825 ORTHO05D006483 4.5e-122 441.8 327 69.4
Medtr4g114160 Medicago truncatula HOM05D005825 ORTHO05D006483 4.5e-122 441.8 326 71.2
Phvul.003G164300 Phaseolus vulgaris HOM05D005825 ORTHO05D006483 5.8e-122 441.4 331 70.1
MBI16_g24711_MAGBIO Magnolia biondii HOM05D005825 ORTHO05D006483 9.9e-122 440.7 325 69.2
AT2G26680 Arabidopsis thaliana HOM05D005825 ORTHO05D006483 1.7e-121 439.9 323 70.0
A04p21320 Brassica napus HOM05D005825 ORTHO05D006483 1.7e-121 439.9 325 70.2
BraA04t17698Z Brassica rapa HOM05D005825 ORTHO05D006483 1.7e-121 439.9 325 70.2
Lj2C942T8 Lonicera japonica HOM05D005825 ORTHO05D006483 1.7e-121 439.9 353 67.4
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 2.9e-121 439.1 326 69.6
Sabra02G0094300 Salix brachista HOM05D005825 ORTHO05D006483 3.8e-121 438.7 324 70.4
TAR625G0074 Trochodendron aralioides HOM05D005825 ORTHO05D006483 3.8e-121 438.7 328 70.4
Aqoxy5G01398 Aquilegia oxysepala HOM05D005825 ORTHO05D006483 4.9e-121 438.3 323 71.2
EL10Ac8g18654 Beta vulgaris HOM05D005825 ORTHO05D006483 4.9e-121 438.3 327 69.4
Psat4g040200 Pisum sativum HOM05D005825 ORTHO05D006483 4.9e-121 438.3 326 70.9
Rhsim01G0071200 Rhododendron simsii HOM05D005825 ORTHO05D006483 4.9e-121 438.3 333 68.8
Gohir.A06G056101 Gossypium hirsutum HOM05D005825 ORTHO05D006483 6.4e-121 438.0 328 70.1
CSS0017066 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 1.1e-120 437.2 323 69.3
Lj2A929T15 Lonicera japonica HOM05D005825 ORTHO05D006483 1.4e-120 436.8 352 67.3
Lalb_Chr12g0197941 Lupinus albus HOM05D005825 ORTHO05D006483 1.4e-120 436.8 325 70.5
Lsat_1_v5_gn_8_58680 Lactuca sativa HOM05D005825 ORTHO05D006483 3.2e-120 435.6 326 68.4
Actinidia40470 Actinidia chinensis HOM05D005825 ORTHO05D006483 4.2e-120 435.3 326 70.6
arahy.Tifrunner.gnm1.ann1.1NB5KJ Arachis hypogaea HOM05D005825 ORTHO05D006483 4.2e-120 435.3 327 68.5
Glyma.13G167400 Glycine max HOM05D005825 ORTHO05D006483 4.2e-120 435.3 326 69.6
Peaxi162Scf00157g01524 Petunia axillaris HOM05D005825 ORTHO05D006483 4.2e-120 435.3 323 68.1
Duzib168G1077 Durio zibethinus HOM05D005825 ORTHO05D006483 7.1e-120 434.5 326 69.6
Nn2g12789 Nelumbo nucifera HOM05D005825 ORTHO05D006483 7.1e-120 434.5 331 68.0
Sc08g0006620 Simmondsia chinensis HOM05D005825 ORTHO05D006483 7.1e-120 434.5 335 67.5
VMungo1215G3451 Vigna mungo HOM05D005825 ORTHO05D006483 7.1e-120 434.5 324 67.9
arahy.Tifrunner.gnm1.ann1.9UEQ51 Arachis hypogaea HOM05D005825 ORTHO05D006483 9.3e-120 434.1 329 68.4
PGR142G1018 Punica granatum HOM05D005825 ORTHO05D006483 9.3e-120 434.1 331 69.8
CSS0027185 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 1.2e-119 433.7 323 69.0
Oeu007499.1 Olea europaea HOM05D005825 ORTHO05D006483 2.1e-119 433.0 329 68.7
Lj4g0013357 Lotus japonicus HOM05D005825 ORTHO05D006483 2.7e-119 432.6 324 69.8
Sabra14G0011800 Salix brachista HOM05D005825 ORTHO05D006483 2.7e-119 432.6 325 70.8
Migut.B01717 Erythranthe guttata HOM05D005825 ORTHO05D006483 3.5e-119 432.2 325 68.3
MSTRG.19597 Avicennia marina HOM05D005825 ORTHO05D006483 6.0e-119 431.4 324 68.2
SalBow3G4290 Salvia bowleyana HOM05D005825 ORTHO05D006483 6.0e-119 431.4 323 69.0
Ah.09g226210 Amaranthus hybridus HOM05D005825 ORTHO05D006483 7.9e-119 431.0 328 68.6
Hma1.2p1_0018F.1_g012420 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 1.0e-118 430.6 264 79.5
C04p57230 Brassica napus HOM05D005825 ORTHO05D006483 1.8e-118 429.9 327 68.5
Hma1.2p1_2368F.1_g320700 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 2.3e-118 429.5 264 79.2
Potri.014G017900 Populus trichocarpa HOM05D005825 ORTHO05D006483 3.0e-118 429.1 321 70.1
BcaB06g28186 Brassica carinata HOM05D005825 ORTHO05D006483 3.9e-118 428.7 325 69.5
BolC4t27250H Brassica oleracea HOM05D005825 ORTHO05D006483 3.9e-118 428.7 327 68.5
Eucgr.C01173 Eucalyptus grandis HOM05D005825 ORTHO05D006483 6.7e-118 427.9 332 69.0
PSO782G3266 Papaver somniferum HOM05D005825 ORTHO05D006483 6.7e-118 427.9 333 66.4
BcaC02g08209 Brassica carinata HOM05D005825 ORTHO05D006483 3.3e-117 425.6 328 68.9
PSO675G5818 Papaver somniferum HOM05D005825 ORTHO05D006483 3.3e-117 425.6 333 65.8
DCAR_017816 Daucus carota HOM05D005825 ORTHO05D006483 4.3e-117 425.2 360 62.5
CAN.G1591.11 Capsicum annuum HOM05D005825 ORTHO05D006483 9.6e-117 424.1 322 67.1
THA.LOC104815280 Tarenaya hassleriana HOM05D005825 ORTHO05D006483 9.6e-117 424.1 327 68.2
Manes.06G058801 Manihot esculenta HOM05D005825 ORTHO05D006483 1.6e-116 423.3 267 78.3
Solyc12g009430.2 Solanum lycopersicum HOM05D005825 ORTHO05D006483 1.6e-116 423.3 325 66.8
Sopen12g004430 Solanum pennellii HOM05D005825 ORTHO05D006483 2.1e-116 422.9 325 66.5
HanXRQChr17g0537731 Helianthus annuus HOM05D005825 ORTHO05D006483 2.8e-116 422.5 323 68.4
HanXRQChr17g0537711 Helianthus annuus HOM05D005825 ORTHO05D006483 4.8e-116 421.8 323 67.8
Thhalv10002044m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 1.4e-115 420.2 322 66.5
arahy.Tifrunner.gnm1.ann1.85XGXJ Arachis hypogaea HOM05D005825 ORTHO05D006483 1.8e-115 419.9 327 65.4
unitig_748.g8100 Utricularia gibba HOM05D005825 ORTHO05D006483 9.0e-115 417.5 324 66.7
arahy.Tifrunner.gnm1.ann1.R6UVTB Arachis hypogaea HOM05D005825 ORTHO05D006483 2.6e-114 416.0 327 65.1
SGA_v2.0_scaffold299G47720 Striga asiatica HOM05D005825 ORTHO05D006483 7.6e-114 414.5 321 66.0
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 4.9e-113 411.8 322 65.8
HPP92_017605 Vanilla planifolia HOM05D005825 ORTHO05D006483 4.2e-112 408.7 330 63.9
Thhalv10023596m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 1.6e-111 406.8 322 65.5
Nitab4.5_0014105g0010 Nicotiana tabacum HOM05D005825 ORTHO05D006483 1.3e-110 403.7 322 65.2
Nitab4.5_0002658g0050 Nicotiana tabacum HOM05D005825 ORTHO05D006483 3.9e-110 402.1 322 64.3
CDE04G1080 Ceratophyllum demersum HOM05D005825 ORTHO05D006483 2.5e-109 399.4 329 64.4
QL10p023454 Quercus lobata HOM05D005825 ORTHO05D006483 3.3e-109 399.1 502 47.6
ATR0225G021 Amborella trichopoda HOM05D005825 ORTHO05D006483 9.7e-109 397.5 266 73.7
Zm00001eb043030 Zea mays HOM05D005825 ORTHO05D006483 1.1e-107 394.0 265 70.2
Haze_25579 Corylus avellana HOM05D005825 ORTHO05D006483 1.4e-107 393.7 317 67.8
Os03g0566600 Oryza sativa ssp. japonica HOM05D005825 ORTHO05D006483 1.4e-107 393.7 288 67.4
HanXRQChr06g0180341 Helianthus annuus HOM05D005825 ORTHO05D006483 5.5e-104 381.7 290 68.3
AUR62011128 Chenopodium quinoa HOM05D005825 ORTHO05D006483 1.8e-102 376.7 327 62.4
SHI03392 Sapria himalayana HOM05D005825 ORTHO05D006483 1.1e-96 357.5 385 51.7
AagrBONN_evm.TU.Sc2ySwM_344.1792 Anthoceros agrestis HOM05D005825 ORTHO05D006483 7.0e-83 311.6 269 56.9
ECA246G2031 Erigeron canadensis HOM05D000004 ORTHO05D000002 7.0e-83 311.6 201 78.1
Potri.002G119800 Populus trichocarpa HOM05D005825 ORTHO05D006483 1.0e-81 307.8 187 81.3
SMO147G0115 Selaginella moellendorffii HOM05D005825 ORTHO05D006483 6.5e-81 305.1 267 55.8
TPR.G10697 Trifolium pratense HOM05D005825 ORTHO05D006483 1.9e-80 303.5 183 83.1
GSVIVG01015529001 Vitis vinifera HOM05D005825 ORTHO05D006483 1.2e-77 294.3 170 85.3
CiPaw.04G171000 Carya illinoinensis HOM05D005825 ORTHO05D006483 3.4e-77 292.7 175 81.1
Glyma.17G115000 Glycine max HOM05D005825 ORTHO05D006483 1.4e-75 287.3 176 81.2
Cc06_g08520 Coffea canephora HOM05D005825 ORTHO05D006483 2.7e-71 273.1 167 79.6
CARHR118580 Cardamine hirsuta HOM05D005825 ORTHO05D006483 2.3e-65 253.4 204 65.2
Actinidia21988 Actinidia chinensis HOM05D005825 ORTHO05D006483 5.4e-51 205.7 151 70.2
Ca_13270_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 1.0e-49 201.4 188 58.5
Eucgr.G00617 Eucalyptus grandis HOM05D005825 ORTHO05D006483 3.3e-48 196.4 132 74.2
Ca_14592_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 2.1e-47 193.7 220 52.3
Eucgr.B02426 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.8e-46 190.7 121 77.7
CARHR118590 Cardamine hirsuta HOM05D005825 ORTHO05D006483 9.8e-45 184.9 120 73.3
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 1.7e-44 184.1 165 53.9
Eucgr.C03225 Eucalyptus grandis HOM05D005825 ORTHO05D006483 2.1e-42 177.2 115 74.8
Eucgr.E01840 Eucalyptus grandis HOM05D005825 ORTHO05D006483 3.4e-37 159.8 121 69.4
TAR381G0761 Trochodendron aralioides HOM05D005825 ORTHO05D006483 1.3e-33 147.9 158 58.2
Eucgr.B02447 Eucalyptus grandis HOM05D005825 ORTHO05D006483 2.3e-33 147.1 95 77.9
CAN.G204.2 Capsicum annuum HOM05D005825 ORTHO05D006483 2.6e-21 107.1 69 75.4
SalBow6G2945 Salvia bowleyana HOM05D000060 ORTHO05D000082 9.6e-16 88.6 124 46.8
Zm00001eb219900 Zea mays HOM05D005825 ORTHO05D006483 6.9e-14 82.4 172 33.7
VMungo0464G1687 Vigna mungo HOM05D005825 ORTHO05D006483 1.9e-11 74.3 55 65.5
MCO17G084 Micromonas commoda HOM05D051517 ORTHO05D006483 7.9e-10 68.9 175 29.1
Cre09.g386756 Chlamydomonas reinhardtii HOM05D005825 ORTHO05D006483 3.9e-09 66.6 178 29.8
Cre12.g488550 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 3.9e-09 66.6 180 31.7
Cre02.g103000 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 1.1e-06 58.5 135 33.3
Cre09.g386747 Chlamydomonas reinhardtii HOM05D005825 ORTHO05D006483 3.1e-06 57.0 148 32.4
PRCOL_00003044 Prasinoderma coloniale HOM05D024924 ORTHO05D006483 4.0e-06 56.6 139 31.7


User provided reference genes

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