Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G0123 Fragaria x ananassa HOM05D005548 ORTHO05D007497 1.9e-262 908.7 461 100.0
FvH4_1g04721 Fragaria vesca HOM05D005548 ORTHO05D007497 7.8e-261 903.3 461 99.3
FAN26G0240 Fragaria x ananassa HOM05D005548 ORTHO05D007497 1.8e-249 865.5 464 95.7
FAN23G0305 Fragaria x ananassa HOM05D005548 ORTHO05D007497 6.0e-245 850.5 464 94.4
RcHm_v2.0_Chr2g0090331 Rosa chinensis HOM05D005548 ORTHO05D007497 6.9e-233 810.4 464 90.5
FAN28G1005 Fragaria x ananassa HOM05D005548 ORTHO05D007497 1.0e-204 716.8 389 94.9
Prupe.7G231800 Prunus persica HOM05D005548 ORTHO05D007497 1.1e-203 713.4 467 79.2
MD02G1046200 Malus domestica HOM05D005548 ORTHO05D007497 2.5e-198 695.7 464 77.6
Haze_25723 Corylus avellana HOM05D005548 ORTHO05D007497 7.9e-189 664.1 464 74.4
Haze_25730 Corylus avellana HOM05D005548 ORTHO05D007497 1.0e-188 663.7 464 74.4
MD15G1184300 Malus domestica HOM05D005548 ORTHO05D007497 4.4e-187 658.3 468 75.0
Cfa021563 Carpinus fangiana HOM05D005548 ORTHO05D007497 3.7e-186 655.2 466 73.8
QL02p085206 Quercus lobata HOM05D005548 ORTHO05D007497 9.1e-185 650.6 467 74.3
Cpa.g.sc23.102 Carica papaya HOM05D005548 ORTHO05D007497 2.6e-184 649.0 465 73.3
GSVIVG01015386001 Vitis vinifera HOM05D005548 ORTHO05D007497 6.1e-181 637.9 430 75.8
Eucgr.C01037 Eucalyptus grandis HOM05D005548 ORTHO05D007497 1.4e-180 636.7 455 72.5
Thecc.09G109700 Theobroma cacao HOM05D005548 ORTHO05D007497 1.4e-180 636.7 465 72.0
CiPaw.04G163600 Carya illinoinensis HOM05D005548 ORTHO05D007497 3.0e-180 635.6 463 71.1
TWI63G0439 Tripterygium wilfordii HOM05D005548 ORTHO05D007497 1.5e-179 633.3 463 72.6
Duzib168G0181 Durio zibethinus HOM05D005548 ORTHO05D007497 2.6e-179 632.5 461 71.1
TAR383G0243 Trochodendron aralioides HOM05D005548 ORTHO05D007497 9.7e-179 630.6 466 70.0
Dinv41607 Davidia involucrata HOM05D005548 ORTHO05D007497 2.2e-178 629.4 466 71.5
arahy.Tifrunner.gnm1.ann1.HQIA7A Arachis hypogaea HOM05D005548 ORTHO05D007497 2.8e-178 629.0 473 68.3
Dinv36636 Davidia involucrata HOM05D005548 ORTHO05D007497 4.8e-178 628.2 460 71.7
VMungo0464G1126 Vigna mungo HOM05D005548 ORTHO05D007497 1.4e-177 626.7 470 69.8
Hma1.2p1_0518F.1_g171060 Hydrangea macrophylla HOM05D005548 ORTHO05D007497 3.1e-177 625.5 405 76.0
Lj2g0015861 Lotus japonicus HOM05D005548 ORTHO05D007497 3.1e-177 625.5 419 74.2
Glyma.09G191000 Glycine max HOM05D005548 ORTHO05D007497 2.7e-176 622.5 467 69.8
Glyma.07G085900 Glycine max HOM05D005548 ORTHO05D007497 3.5e-176 622.1 467 69.6
Actinidia09420 Actinidia chinensis HOM05D005548 ORTHO05D007497 1.3e-175 620.2 397 77.6
Potri.018G080900 Populus trichocarpa HOM05D005548 ORTHO05D007497 1.3e-175 620.2 458 69.7
Nn2g11732 Nelumbo nucifera HOM05D005548 ORTHO05D007497 3.8e-175 618.6 468 69.2
Lalb_Chr14g0371531 Lupinus albus HOM05D005548 ORTHO05D007497 6.5e-175 617.8 465 69.2
Manes.03G021300 Manihot esculenta HOM05D005548 ORTHO05D007497 8.5e-175 617.5 463 69.8
Phvul.004G163700 Phaseolus vulgaris HOM05D005548 ORTHO05D007497 4.2e-174 615.1 470 68.1
Atru.chr7.1357 Acer truncatum HOM05D005548 ORTHO05D007497 5.5e-174 614.8 381 79.3
PGR142G0895 Punica granatum HOM05D005548 ORTHO05D007497 7.2e-174 614.4 401 76.8
PGSC0003DMG400000312 Solanum tuberosum HOM05D005548 ORTHO05D007497 7.2e-174 614.4 447 70.2
Sopen12g003070 Solanum pennellii HOM05D005548 ORTHO05D007497 2.7e-173 612.5 450 69.6
Solyc12g007090.2 Solanum lycopersicum HOM05D005548 ORTHO05D007497 6.1e-173 611.3 450 69.6
Lalb_Chr22g0352791 Lupinus albus HOM05D005548 ORTHO05D007497 1.4e-172 610.1 465 68.0
ClCG00G004520 Citrullus lanatus HOM05D005548 ORTHO05D007497 2.3e-172 609.4 399 75.7
EL10Ac8g18489 Beta vulgaris HOM05D005548 ORTHO05D007497 3.0e-172 609.0 454 69.6
DCAR_010452 Daucus carota HOM05D005548 ORTHO05D007497 2.6e-171 605.9 457 69.6
CSS0001162 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 3.4e-171 605.5 454 70.7
CSS0009071 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 4.4e-171 605.1 455 70.1
Gohir.D07G005900 Gossypium hirsutum HOM05D005548 ORTHO05D007497 7.5e-171 604.4 465 69.0
Nitab4.5_0005947g0010 Nicotiana tabacum HOM05D005548 ORTHO05D007497 1.3e-170 603.6 454 68.9
CAN.G1529.9 Capsicum annuum HOM05D005548 ORTHO05D007497 1.7e-170 603.2 451 68.7
MBI04_g22012_MAGBIO Magnolia biondii HOM05D005548 ORTHO05D007497 1.7e-170 603.2 457 69.1
MELO3C025346.2 Cucumis melo HOM05D005548 ORTHO05D007497 8.3e-170 600.9 399 74.7
Sc18g0001240 Simmondsia chinensis HOM05D005548 ORTHO05D007497 8.3e-170 600.9 459 68.6
COL.COLO4_34874 Corchorus olitorius HOM05D005548 ORTHO05D007497 1.4e-169 600.1 376 79.5
Gohir.A07G006100 Gossypium hirsutum HOM05D005548 ORTHO05D007497 3.1e-169 599.0 462 68.4
Cc06_g09710 Coffea canephora HOM05D005548 ORTHO05D007497 4.1e-169 598.6 471 67.9
Hund26198 Selenicereus undatus HOM05D005548 ORTHO05D007497 4.1e-169 598.6 457 69.1
THA.LOC104811114 Tarenaya hassleriana HOM05D005548 ORTHO05D007497 5.4e-169 598.2 416 73.3
Gorai.001G005500 Gossypium raimondii HOM05D005548 ORTHO05D007497 7.0e-169 597.8 465 68.4
Sabra18G0068100 Salix brachista HOM05D005548 ORTHO05D007497 1.2e-168 597.0 452 69.5
Ca_03976_v3 Cicer arietinum L. HOM05D005548 ORTHO05D007497 1.6e-168 596.7 469 66.1
TPR.G18453 Trifolium pratense HOM05D005548 ORTHO05D007497 2.0e-168 596.3 460 67.6
CsaV3_1G024240 Cucumis sativus L. HOM05D005548 ORTHO05D007497 2.7e-168 595.9 447 68.2
Sed0013441 Sechium edule HOM05D005548 ORTHO05D007497 5.9e-168 594.7 399 74.2
Migut.K00455 Erythranthe guttata HOM05D005548 ORTHO05D007497 7.7e-168 594.3 421 72.2
Actinidia20374 Actinidia chinensis HOM05D005548 ORTHO05D007497 1.2e-165 587.0 376 77.1
HanXRQChr06g0179971 Helianthus annuus HOM05D005548 ORTHO05D007497 1.6e-165 586.6 455 68.1
Lsat_1_v5_gn_8_95001 Lactuca sativa HOM05D005548 ORTHO05D007497 3.6e-165 585.5 460 67.2
AUR62010987 Chenopodium quinoa HOM05D005548 ORTHO05D007497 2.3e-164 582.8 375 75.5
Medtr6g088460 Medicago truncatula HOM05D005548 ORTHO05D007497 3.0e-164 582.4 455 66.2
Lj7C651T8 Lonicera japonica HOM05D005548 ORTHO05D007497 6.8e-164 581.3 475 68.0
PSO782G1908 Papaver somniferum HOM05D005548 ORTHO05D007497 6.8e-164 581.3 458 64.6
Aqoxy7G01651 Aquilegia oxysepala HOM05D005548 ORTHO05D007497 2.0e-163 579.7 461 66.8
PSO832G1226 Papaver somniferum HOM05D005548 ORTHO05D007497 7.5e-163 577.8 469 63.5
Psat1g042920 Pisum sativum HOM05D005548 ORTHO05D007497 7.5e-163 577.8 465 64.5
Peaxi162Scf00546g00024 Petunia axillaris HOM05D005548 ORTHO05D007497 6.3e-162 574.7 442 66.5
ECA233G4048 Erigeron canadensis HOM05D005548 ORTHO05D007497 5.4e-161 571.6 381 74.3
AT5G19540 Arabidopsis thaliana HOM05D005548 ORTHO05D007497 5.9e-160 568.2 405 71.4
ATR0315G003 Amborella trichopoda HOM05D005548 ORTHO05D007497 2.9e-159 565.8 394 71.3
AL6G31050 Arabidopsis lyrata HOM05D005548 ORTHO05D007497 6.6e-159 564.7 428 68.5
Carub.0006s1789 Capsella rubella HOM05D005548 ORTHO05D007497 1.9e-158 563.1 398 71.4
CDE02G3701 Ceratophyllum demersum HOM05D005548 ORTHO05D007497 1.9e-158 563.1 470 63.4
Nitab4.5_0002904g0080 Nicotiana tabacum HOM05D005548 ORTHO05D007497 3.3e-158 562.4 455 66.2
SalBow1G6148 Salvia bowleyana HOM05D005548 ORTHO05D007497 4.3e-158 562.0 434 67.1
MSTRG.26421 Avicennia marina HOM05D005548 ORTHO05D007497 9.5e-158 560.8 416 67.8
CARHR193360 Cardamine hirsuta HOM05D005548 ORTHO05D007497 9.5e-158 560.8 461 65.7
Sp6g24840 Schrenkiella parvula HOM05D005548 ORTHO05D007497 1.4e-156 557.0 459 64.1
Aa31LG4G18070 Aethionema arabicum HOM05D005548 ORTHO05D007497 4.0e-156 555.4 415 69.2
BcaB05g23389 Brassica carinata HOM05D005548 ORTHO05D007497 3.7e-154 548.9 461 62.0
Thhalv10013469m.g Eutrema salsugineum HOM05D005548 ORTHO05D007497 1.8e-153 546.6 459 63.4
BolC2t06964H Brassica oleracea HOM05D005548 ORTHO05D007497 7.0e-153 544.7 464 62.1
unitig_899.g15439 Utricularia gibba HOM05D005548 ORTHO05D007497 7.0e-153 544.7 395 69.6
Duzib150G0071 Durio zibethinus HOM05D005548 ORTHO05D007497 1.2e-152 543.9 449 65.9
BcaC03g13685 Brassica carinata HOM05D005548 ORTHO05D007497 1.3e-151 540.4 464 61.4
A02p05630 Brassica napus HOM05D005548 ORTHO05D007497 1.3e-151 540.4 451 62.7
BNapus_Darmor_BZH_scaffold_38p02320 Brassica napus HOM05D005548 ORTHO05D007497 1.3e-151 540.4 464 61.4
BraA02t05515Z Brassica rapa HOM05D005548 ORTHO05D007497 1.3e-151 540.4 451 62.7
SGA_v2.0_scaffold307G48040 Striga asiatica HOM05D005548 ORTHO05D007497 3.3e-150 535.8 438 62.6
Os08g0387500 Oryza sativa ssp. japonica HOM05D005548 ORTHO05D007497 1.1e-140 504.2 397 64.5
Zm00001eb042080 Zea mays HOM05D005548 ORTHO05D007497 1.4e-140 503.8 402 64.2
vmacro20704 Vaccinium macrocarpon HOM05D005548 ORTHO05D007497 1.8e-140 503.4 462 58.4
Rhsim01G0095300 Rhododendron simsii HOM05D005548 ORTHO05D007497 8.3e-138 494.6 455 56.9
Hma1.2p1_0518F.1_g171070 Hydrangea macrophylla HOM05D005548 ORTHO05D007497 1.6e-136 490.3 316 75.9
SalBow1G2309 Salvia bowleyana HOM05D005548 ORTHO05D007497 4.9e-130 468.8 346 68.5
HPP92_019989 Vanilla planifolia HOM05D005548 ORTHO05D004628 2.7e-112 409.8 355 61.4
AUR62021496 Chenopodium quinoa HOM05D005548 ORTHO05D007497 1.3e-106 391.0 274 71.9
Mapoly0115s0052 Marchantia polymorpha HOM05D005548 ORTHO05D007497 9.3e-105 384.8 436 48.4
AagrBONN_evm.TU.Sc2ySwM_344.3922 Anthoceros agrestis HOM05D005548 ORTHO05D007497 2.3e-103 380.2 410 47.3
Pp3c17_15530 Physcomitrium patens HOM05D005548 ORTHO05D007497 2.3e-103 380.2 375 52.8
Pp3c17_15540 Physcomitrium patens HOM05D005548 ORTHO05D007497 1.1e-100 371.3 364 52.7
SMO367G0640 Selaginella moellendorffii HOM05D005548 ORTHO05D007497 7.6e-99 365.2 397 50.4
SEGI_13755 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 5.7e-94 349.0 375 49.9
SEGI_11261 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 3.9e-79 299.7 320 50.6
Rhsim01G0096400 Rhododendron simsii HOM05D005548 ORTHO05D007497 3.7e-77 293.1 337 46.6
CBR_g3024 Chara braunii HOM05D005548 ORTHO05D007497 1.2e-75 288.1 382 45.5
AUR62021498 Chenopodium quinoa HOM05D005548 ORTHO05D007497 7.5e-54 215.7 136 74.3
Ciclev10010350m.g Citrus clementina HOM05D005548 ORTHO05D007497 1.1e-52 211.8 258 47.7
Nn8g39172 Nelumbo nucifera HOM05D005548 ORTHO05D007497 5.4e-36 156.4 115 69.6
Oeu048670.1 Olea europaea HOM05D005548 ORTHO05D007497 1.6e-35 154.8 98 71.4
CSS0016063 Camellia sinensis var. sinensis HOM05D003621 ORTHO05D004259 9.8e-30 135.6 90 75.6
CSS0042262 Camellia sinensis var. sinensis HOM05D003621 ORTHO05D004259 4.9e-29 133.3 90 74.4
SEGI_23308 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 3.2e-28 130.6 283 32.5
Ah.12g056490 Amaranthus hybridus HOM05D005548 ORTHO05D007497 7.0e-28 129.4 82 75.6
arahy.Tifrunner.gnm1.ann1.VN1956 Arachis hypogaea HOM05D005548 ORTHO05D007497 4.6e-27 126.7 140 53.6
SEGI_35049 Sequoiadendron giganteum HOM05D005548 ORTHO05D007497 2.5e-25 120.9 260 31.5
Dinv06981 Davidia involucrata HOM05D005548 ORTHO05D045157 1.6e-24 118.2 81 71.6
CSS0021555 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 4.4e-22 110.2 74 75.7
MCO02G293 Micromonas commoda HOM05D005548 ORTHO05D007497 3.5e-19 100.5 365 27.9
CSS0011769 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 4.6e-19 100.1 135 51.9
CSS0008802 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 9.9e-14 82.4 126 47.6
SalBow1G1492 Salvia bowleyana HOM05D005548 ORTHO05D007497 7.1e-12 76.3 126 41.3
CSS0008633 Camellia sinensis var. sinensis HOM05D005548 ORTHO05D007497 3.5e-11 73.9 74 56.8
Lsat_1_v5_gn_5_96001 Lactuca sativa HOM05D005548 ORTHO05D029961 2.1e-08 64.7 115 40.0
TPR.G36012 Trifolium pratense HOM05D005548 ORTHO05D007497 4.7e-08 63.5 121 38.0


User provided reference genes

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