Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G0057 Fragaria x ananassa HOM05D004652 ORTHO05D005634 2.4e-198 695.3 345 100.0
FvH4_1g16330 Fragaria vesca HOM05D004652 ORTHO05D005634 1.2e-197 693.0 345 99.7
FAN23G0595 Fragaria x ananassa HOM05D004652 ORTHO05D005634 4.0e-193 677.9 345 97.1
FAN28G0632 Fragaria x ananassa HOM05D004652 ORTHO05D005634 9.2e-190 666.8 349 95.1
RcHm_v2.0_Chr2g0106191 Rosa chinensis HOM05D004652 ORTHO05D005634 6.6e-188 660.6 345 95.1
MD02G1175800 Malus domestica HOM05D004652 ORTHO05D005634 8.1e-162 573.9 345 82.0
CiPaw.01G015500 Carya illinoinensis HOM05D004652 ORTHO05D005634 3.4e-160 568.5 345 77.7
Dinv30009 Davidia involucrata HOM05D004652 ORTHO05D005634 4.4e-160 568.2 345 80.3
CiPaw.01G015800 Carya illinoinensis HOM05D004652 ORTHO05D005634 5.8e-160 567.8 345 78.3
QL06p040720 Quercus lobata HOM05D004652 ORTHO05D005634 1.2e-157 560.1 344 77.3
CANSAT25G2702 Cannabis sativa HOM05D004652 ORTHO05D005634 8.7e-156 553.9 345 76.2
Haze_15373 Corylus avellana HOM05D004652 ORTHO05D005634 2.4e-153 545.8 375 70.7
GSVIVG01022087001 Vitis vinifera HOM05D004652 ORTHO05D005634 2.0e-152 542.7 346 75.1
Glyma.11G054000 Glycine max HOM05D004652 ORTHO05D005634 7.6e-152 540.8 348 76.7
Nn5g30355 Nelumbo nucifera HOM05D004652 ORTHO05D005634 9.9e-152 540.4 343 75.2
Actinidia36476 Actinidia chinensis HOM05D004652 ORTHO05D005634 3.8e-151 538.5 345 74.8
CSS0025726 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 4.9e-151 538.1 346 74.9
CsaV3_2G016420 Cucumis sativus L. HOM05D004652 ORTHO05D005634 5.4e-150 534.6 345 74.2
Phvul.002G017100 Phaseolus vulgaris HOM05D004652 ORTHO05D005634 7.1e-150 534.3 349 74.8
MELO3C020851.2 Cucumis melo HOM05D004652 ORTHO05D005634 1.6e-149 533.1 345 73.9
Glyma.01G188100 Glycine max HOM05D004652 ORTHO05D005634 2.1e-149 532.7 348 75.3
Medtr7g104350 Medicago truncatula HOM05D004652 ORTHO05D005634 7.9e-149 530.8 346 75.4
Psat3g034240 Pisum sativum HOM05D004652 ORTHO05D005634 3.9e-148 528.5 346 75.1
arahy.Tifrunner.gnm1.ann1.8Y90C0 Arachis hypogaea HOM05D004652 ORTHO05D005634 6.7e-148 527.7 354 71.5
arahy.Tifrunner.gnm1.ann1.EFTP1R Arachis hypogaea HOM05D004652 ORTHO05D005634 8.7e-148 527.3 354 72.0
TPR.G19549 Trifolium pratense HOM05D004652 ORTHO05D005634 1.5e-147 526.6 343 74.3
VMungo1215G2858 Vigna mungo HOM05D004652 ORTHO05D005634 1.5e-147 526.6 349 73.1
Lj2g0023089 Lotus japonicus HOM05D004652 ORTHO05D005634 5.6e-147 524.6 349 74.2
Lalb_Chr05g0213341 Lupinus albus HOM05D004652 ORTHO05D005634 7.4e-147 524.2 345 73.0
Actinidia12037 Actinidia chinensis HOM05D004652 ORTHO05D005634 1.3e-146 523.5 374 70.1
Hma1.2p1_0670F.1_g200440 Hydrangea macrophylla HOM05D004652 ORTHO05D005634 2.1e-146 522.7 349 73.6
Peaxi162Scf00549g00023 Petunia axillaris HOM05D004652 ORTHO05D005634 4.8e-146 521.5 345 73.3
CSS0033708 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 5.8e-144 514.6 330 74.2
Migut.H00415 Erythranthe guttata HOM05D004652 ORTHO05D005634 2.2e-143 512.7 343 71.4
Nitab4.5_0001221g0030 Nicotiana tabacum HOM05D004652 ORTHO05D005634 2.2e-143 512.7 345 72.5
TWI09G0879 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 6.4e-143 511.1 347 72.9
Potri.007G045900 Populus trichocarpa HOM05D004652 ORTHO05D005634 2.4e-142 509.2 346 70.8
Ciclev10025986m.g Citrus clementina HOM05D004652 ORTHO05D005634 5.5e-142 508.1 349 72.2
MSTRG.23735 Avicennia marina HOM05D004652 ORTHO05D005634 7.1e-142 507.7 345 71.9
PGR102G1991 Punica granatum HOM05D004652 ORTHO05D005634 7.1e-142 507.7 345 70.1
Sopen02g037740 Solanum pennellii HOM05D004652 ORTHO05D005634 7.1e-142 507.7 344 70.1
Lj7A73G20 Lonicera japonica HOM05D004652 ORTHO05D005634 9.3e-142 507.3 306 78.4
Manes.13G121100 Manihot esculenta HOM05D004652 ORTHO05D005634 9.3e-142 507.3 351 71.5
Sed0013827 Sechium edule HOM05D004652 ORTHO05D005634 1.6e-141 506.5 346 71.1
Solyc02g093170.4 Solanum lycopersicum HOM05D004652 ORTHO05D005634 1.6e-141 506.5 345 69.9
PGSC0003DMG400004028 Solanum tuberosum HOM05D004652 ORTHO05D005634 3.5e-141 505.4 346 69.9
HanXRQChr15g0490761 Helianthus annuus HOM05D004652 ORTHO05D005634 6.0e-141 504.6 349 70.8
Nitab4.5_0002765g0060 Nicotiana tabacum HOM05D004652 ORTHO05D005634 5.1e-140 501.5 349 70.8
Prupe.6G231900 Prunus persica HOM05D004652 ORTHO05D005634 1.1e-139 500.4 286 84.6
Lsat_1_v5_gn_4_165120 Lactuca sativa HOM05D004652 ORTHO05D005634 2.5e-139 499.2 345 69.9
Cc07_g06170 Coffea canephora HOM05D004652 ORTHO05D005634 3.3e-139 498.8 347 70.3
PSO675G7477 Papaver somniferum HOM05D004652 ORTHO05D005634 1.3e-138 496.9 361 65.4
GSVIVG01031712001 Vitis vinifera HOM05D004652 ORTHO05D005634 2.8e-138 495.7 345 71.3
Duzib147G0331 Durio zibethinus HOM05D004652 ORTHO05D005634 6.2e-138 494.6 338 71.0
Gorai.013G045700 Gossypium raimondii HOM05D004652 ORTHO05D005634 1.1e-137 493.8 340 71.8
Thecc.02G103600 Theobroma cacao HOM05D004652 ORTHO05D005634 1.1e-137 493.8 340 72.9
Gohir.A13G042200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 3.1e-137 492.3 340 71.8
Cpa.g.sc55.119 Carica papaya HOM05D004652 ORTHO05D005634 4.0e-137 491.9 343 70.3
Potri.009G099600 Populus trichocarpa HOM05D004652 ORTHO05D005634 9.0e-137 490.7 346 70.8
unitig_736.g22389 Utricularia gibba HOM05D004652 ORTHO05D005634 1.2e-136 490.3 346 67.9
DCAR_010876 Daucus carota HOM05D004652 ORTHO05D005634 2.6e-136 489.2 349 68.8
Atru.chr5.2643 Acer truncatum HOM05D004652 ORTHO05D005634 4.5e-136 488.4 347 70.0
Atru.chr5.2649 Acer truncatum HOM05D004652 ORTHO05D005634 4.5e-136 488.4 347 70.0
Sabra09G0075900 Salix brachista HOM05D004652 ORTHO05D005634 1.7e-135 486.5 346 70.2
Duzib132G1249 Durio zibethinus HOM05D004652 ORTHO05D005634 2.2e-135 486.1 346 70.2
ECA232G0198 Erigeron canadensis HOM05D004652 ORTHO05D005634 3.8e-135 485.3 316 73.1
Thecc.01G060000 Theobroma cacao HOM05D004652 ORTHO05D005634 4.9e-135 485.0 304 76.6
Gorai.007G215700 Gossypium raimondii HOM05D004652 ORTHO05D005634 1.1e-134 483.8 343 70.6
TWI31G1310 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 1.4e-134 483.4 306 75.5
Ciclev10030127m.g Citrus clementina HOM05D004652 ORTHO05D005634 2.5e-134 482.6 347 68.3
Eucgr.I01131 Eucalyptus grandis HOM05D004652 ORTHO05D005634 6.0e-133 478.0 348 68.1
Sabra07G0041100 Salix brachista HOM05D004652 ORTHO05D005634 7.9e-133 477.6 380 62.9
Aqoxy6G01262 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 1.0e-132 477.2 347 69.2
Gohir.A11G195100 Gossypium hirsutum HOM05D004652 ORTHO05D005634 1.3e-130 470.3 305 74.1
AUR62013234 Chenopodium quinoa HOM05D004652 ORTHO05D005634 4.8e-130 468.4 344 68.0
Oeu049898.1 Olea europaea HOM05D004652 ORTHO05D005634 5.3e-129 464.9 299 75.9
Sc07g0000730 Simmondsia chinensis HOM05D004652 ORTHO05D005634 9.0e-129 464.2 343 65.6
vmacro05311 Vaccinium macrocarpon HOM05D004652 ORTHO05D005634 1.2e-128 463.8 346 66.2
Atru.chr3.293 Acer truncatum HOM05D004652 ORTHO05D005634 2.2e-127 459.5 351 66.1
THA.LOC104807263 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 5.5e-126 454.9 327 67.6
Thhalv10025679m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 7.2e-126 454.5 330 68.8
ATR0724G029 Amborella trichopoda HOM05D004652 ORTHO05D005634 2.3e-124 449.5 336 65.8
Sp7g31800 Schrenkiella parvula HOM05D004652 ORTHO05D005634 6.7e-124 448.0 330 67.9
EL10Ac9g22324 Beta vulgaris HOM05D004652 ORTHO05D005634 8.7e-124 447.6 350 64.3
CDE02G2369 Ceratophyllum demersum HOM05D004652 ORTHO05D005634 8.7e-124 447.6 309 69.3
Rhsim10G0114700 Rhododendron simsii HOM05D004652 ORTHO05D005634 1.1e-123 447.2 310 70.3
Carub.0007s0633 Capsella rubella HOM05D004652 ORTHO05D005634 2.5e-123 446.0 333 66.4
CARHR242200 Cardamine hirsuta HOM05D004652 ORTHO05D005634 5.7e-123 444.9 341 65.7
Hund13540 Selenicereus undatus HOM05D004652 ORTHO05D005634 7.4e-123 444.5 342 62.3
AL7G17310 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 9.7e-123 444.1 331 67.7
AT4G34090 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 1.3e-122 443.7 332 67.2
THA.LOC104807591 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 1.6e-122 443.4 342 64.3
BcaNung03359 Brassica carinata HOM05D004652 ORTHO05D005634 2.2e-122 443.0 330 66.7
PSO541G5706 Papaver somniferum HOM05D004652 ORTHO05D005634 6.9e-121 438.0 361 60.1
SGA_v2.0_scaffold143G35809 Striga asiatica HOM05D004652 ORTHO05D005634 6.9e-121 438.0 279 74.9
Gohir.D11G201200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 7.7e-120 434.5 285 74.0
Ah.01g017900 Amaranthus hybridus HOM05D004652 ORTHO05D005634 1.0e-119 434.1 286 72.4
Os03g0109700 Oryza sativa ssp. japonica HOM05D004652 ORTHO05D005634 2.9e-119 432.6 334 61.4
Aa31LG2G16510 Aethionema arabicum HOM05D002471 ORTHO05D003712 6.5e-119 431.4 306 69.0
AT2G23370 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 1.2e-117 427.2 343 62.7
AUR62010252 Chenopodium quinoa HOM05D004652 ORTHO05D005634 2.1e-117 426.4 279 73.5
AL4G13280 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 3.6e-117 425.6 341 61.9
Eucgr.H01690 Eucalyptus grandis HOM05D004652 ORTHO05D005634 7.9e-117 424.5 311 63.7
HPP92_024094 Vanilla planifolia HOM05D004652 ORTHO05D005634 1.0e-116 424.1 349 61.9
SGA_v2.0_scaffold34G13618 Striga asiatica HOM05D004652 ORTHO05D005634 1.4e-116 423.7 283 73.5
BolC8t51563H Brassica oleracea HOM05D004652 ORTHO05D005634 5.1e-116 421.8 314 65.3
CARHR293000 Cardamine hirsuta HOM05D004652 ORTHO05D005634 1.5e-115 420.2 315 65.1
Carub.0004s0257 Capsella rubella HOM05D004652 ORTHO05D005634 2.0e-115 419.9 342 62.3
BcaC07g40988 Brassica carinata HOM05D004652 ORTHO05D005634 7.4e-115 417.9 314 65.0
C08p39900 Brassica napus HOM05D004652 ORTHO05D005634 7.4e-115 417.9 314 65.0
A09p56940 Brassica napus HOM05D004652 ORTHO05D005634 1.3e-114 417.2 314 64.6
Sp4g02380 Schrenkiella parvula HOM05D004652 ORTHO05D005634 2.2e-114 416.4 342 61.4
BraA09t41086Z Brassica rapa HOM05D004652 ORTHO05D005634 4.1e-113 412.1 314 64.0
AUR62001905 Chenopodium quinoa HOM05D004652 ORTHO05D005634 3.4e-112 409.1 311 62.1
Zm00001eb404220 Zea mays HOM05D004652 ORTHO05D005634 1.9e-110 403.3 323 60.1
Hund00119 Selenicereus undatus HOM05D004652 ORTHO05D005634 1.6e-109 400.2 341 62.2
ClCG02G012270 Citrullus lanatus HOM05D004652 ORTHO05D005634 2.3e-108 396.4 261 71.3
BolC7t46455H Brassica oleracea HOM05D004652 ORTHO05D005634 6.7e-108 394.8 333 62.5
Ca_08994_v3 Cicer arietinum L. HOM05D004652 ORTHO05D005634 1.8e-105 386.7 344 59.3
BraA03t15329Z Brassica rapa HOM05D004652 ORTHO05D005634 2.0e-104 383.3 308 64.3
Aa31LG7G13600 Aethionema arabicum HOM05D004652 ORTHO05D005634 5.9e-104 381.7 356 56.5
C07p60150 Brassica napus HOM05D004652 ORTHO05D005634 1.7e-103 380.2 360 57.8
AUR62003906 Chenopodium quinoa HOM05D004652 ORTHO05D005634 5.0e-103 378.6 282 62.8
A03p62590 Brassica napus HOM05D004652 ORTHO05D005634 2.5e-102 376.3 360 57.2
Cpa.g.sc200.27 Carica papaya HOM05D004652 ORTHO05D005634 2.7e-101 372.9 362 55.0
COL.COLO4_24563 Corchorus olitorius HOM05D004652 ORTHO05D005634 1.4e-100 370.5 251 72.5
SMO367G0761 Selaginella moellendorffii HOM05D004652 ORTHO05D005634 1.3e-98 364.0 303 56.8
Mapoly0032s0004 Marchantia polymorpha HOM05D004652 ORTHO05D005634 2.8e-98 362.8 311 55.0
Thhalv10000243m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 2.7e-96 356.3 325 56.3
COL.COLO4_32629 Corchorus olitorius HOM05D004652 ORTHO05D005634 6.5e-95 351.7 346 55.2
Pp3c4_13980 Physcomitrium patens HOM05D004652 ORTHO05D005634 1.9e-94 350.1 303 56.1
Pp3c13_18360 Physcomitrium patens HOM05D004652 ORTHO05D005634 6.8e-92 341.7 309 53.7
FAN26G0096 Fragaria x ananassa HOM05D004652 ORTHO05D005634 1.4e-89 334.0 164 99.4
AagrBONN_evm.TU.Sc2ySwM_362.2895 Anthoceros agrestis HOM05D004652 ORTHO05D005634 5.0e-87 325.5 340 49.4
Gohir.D13G040700 Gossypium hirsutum HOM05D004652 ORTHO05D005634 2.3e-84 316.6 229 69.0
EL10Ac6g15724 Beta vulgaris HOM05D004652 ORTHO05D005634 2.0e-83 313.5 235 62.6
CBR_g34458 Chara braunii HOM05D004652 ORTHO05D005634 2.2e-82 310.1 335 46.6
Eucgr.I01132 Eucalyptus grandis HOM05D004652 ORTHO05D005634 7.0e-81 305.1 233 64.8
Oeu004436.1 Olea europaea HOM05D004652 ORTHO05D005634 1.0e-79 301.2 318 55.7
Ah.02g125990 Amaranthus hybridus HOM05D004652 ORTHO05D005634 1.7e-79 300.4 281 53.7
TAR381G1258 Trochodendron aralioides HOM05D004652 ORTHO05D005634 1.4e-73 280.8 203 67.5
SEGI_25477 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 2.6e-59 233.4 165 66.1
SEGI_26044 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 2.6e-59 233.4 165 66.1
Aqoxy2G01254 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 8.3e-58 228.4 140 79.3
TAR381G1342 Trochodendron aralioides HOM05D004652 ORTHO05D005634 6.6e-47 192.2 112 79.5
Cre13.g563150 Chlamydomonas reinhardtii HOM05D004652 ORTHO05D005634 9.0e-44 181.8 333 33.9
Aqoxy4G02413 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 1.3e-42 177.9 112 77.7
ECA248G0229 Erigeron canadensis HOM05D004652 ORTHO05D005634 1.3e-42 177.9 118 70.3
PRCOL_00001748 Prasinoderma coloniale HOM05D004652 ORTHO05D005634 7.8e-40 168.7 308 34.7
MCO15G669 Micromonas commoda HOM05D004652 ORTHO05D005634 2.4e-33 147.1 330 31.5
Potri.001G304401 Populus trichocarpa HOM05D004652 ORTHO05D005634 6.0e-32 142.5 129 55.8
TAR381G1519 Trochodendron aralioides HOM05D004652 ORTHO05D005634 7.9e-32 142.1 163 49.1
MCO09G010 Micromonas commoda HOM05D004652 ORTHO05D005634 4.3e-30 136.3 361 33.2
Sabra07G0040900 Salix brachista HOM05D015619 ORTHO05D009044 3.0e-23 113.6 87 65.5
Lalb_Chr09g0323281 Lupinus albus HOM05D004652 ORTHO05D005634 1.5e-22 111.3 169 38.5
FAN23G0103 Fragaria x ananassa HOM05D004652 ORTHO05D198901 2.8e-21 107.1 117 54.7
Cc00_g07740 Coffea canephora HOM05D004652 ORTHO05D005634 1.1e-17 95.1 286 28.0
CDE01G0594 Ceratophyllum demersum HOM05D000934 ORTHO05D000746 2.1e-16 90.9 105 44.8


User provided reference genes

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