Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN19G0020 Fragaria x ananassa HOM05D005902 ORTHO05D007182 6.5e-105 384.0 188 100.0
FAN26G1601 Fragaria x ananassa HOM05D005902 ORTHO05D007182 4.2e-104 381.3 188 99.5
FAN28G1805 Fragaria x ananassa HOM05D005902 ORTHO05D007182 1.6e-103 379.4 188 98.9
RcHm_v2.0_Chr3g0493321 Rosa chinensis HOM05D005902 ORTHO05D007182 2.5e-101 372.1 188 97.3
MD17G1258000 Malus domestica HOM05D005902 ORTHO05D007182 9.1e-99 363.6 187 94.1
MD09G1263000 Malus domestica HOM05D005902 ORTHO05D007182 2.6e-98 362.1 188 93.6
CiPaw.03G078000 Carya illinoinensis HOM05D005902 ORTHO05D007182 2.9e-97 358.6 188 92.0
Haze_14303 Corylus avellana HOM05D005902 ORTHO05D007182 6.5e-97 357.5 188 91.5
Cfa007771 Carpinus fangiana HOM05D005902 ORTHO05D007182 8.5e-97 357.1 188 91.5
Lj2A514T43 Lonicera japonica HOM05D005902 ORTHO05D007182 1.9e-96 355.9 188 91.5
Prupe.3G160700 Prunus persica HOM05D005902 ORTHO05D007182 3.6e-95 351.7 188 90.4
Nitab4.5_0017196g0010 Nicotiana tabacum HOM05D005902 ORTHO05D007182 3.9e-94 348.2 188 88.3
ClCG05G012140 Citrullus lanatus HOM05D005902 ORTHO05D007182 2.0e-93 345.9 189 88.4
MELO3C023753.2 Cucumis melo HOM05D005902 ORTHO05D007182 2.6e-93 345.5 189 88.4
CAN.G1464.8 Capsicum annuum HOM05D005902 ORTHO05D007182 3.3e-93 345.1 188 87.2
Peaxi162Scf00525g00623 Petunia axillaris HOM05D005902 ORTHO05D007182 3.3e-93 345.1 187 88.2
Manes.05G062600 Manihot esculenta HOM05D005902 ORTHO05D007182 4.4e-93 344.7 189 88.9
CsaV3_3G020300 Cucumis sativus L. HOM05D005902 ORTHO05D007182 7.4e-93 344.0 189 87.8
Hma1.2p1_0158F.1_g069840 Hydrangea macrophylla HOM05D005902 ORTHO05D007182 7.4e-93 344.0 188 87.2
Nn3g18467 Nelumbo nucifera HOM05D005902 ORTHO05D007182 9.7e-93 343.6 189 86.8
Nitab4.5_0000905g0130 Nicotiana tabacum HOM05D005902 ORTHO05D007182 9.7e-93 343.6 188 87.2
CSS0022144 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 1.7e-92 342.8 189 87.8
Ciclev10005984m.g Citrus clementina HOM05D005902 ORTHO05D007182 1.7e-92 342.8 189 87.3
QL02p060024 Quercus lobata HOM05D005902 ORTHO05D007182 1.7e-92 342.8 189 91.0
VMungo0647G1816 Vigna mungo HOM05D005902 ORTHO05D007182 2.2e-92 342.4 189 88.9
Lalb_Chr10g0104081 Lupinus albus HOM05D005902 ORTHO05D007182 2.8e-92 342.0 193 86.5
Cc07_g13000 Coffea canephora HOM05D005902 ORTHO05D007182 4.8e-92 341.3 189 86.2
Psat2g044640 Pisum sativum HOM05D005902 ORTHO05D007182 4.8e-92 341.3 191 86.4
Phvul.008G239100 Phaseolus vulgaris HOM05D005902 ORTHO05D007182 6.3e-92 340.9 190 88.4
Actinidia35717 Actinidia chinensis HOM05D005902 ORTHO05D007182 8.2e-92 340.5 188 85.6
Solyc05g056560.3 Solanum lycopersicum HOM05D005902 ORTHO05D007182 8.2e-92 340.5 188 86.2
Sopen05g034960 Solanum pennellii HOM05D005902 ORTHO05D007182 8.2e-92 340.5 188 86.2
PGR031G2550 Punica granatum HOM05D005902 ORTHO05D007182 1.8e-91 339.3 189 85.7
Dinv28227 Davidia involucrata HOM05D005902 ORTHO05D007182 2.4e-91 339.0 189 86.8
PGSC0003DMG400023318 Solanum tuberosum HOM05D005902 ORTHO05D007182 3.1e-91 338.6 188 86.2
Glyma.14G211800 Glycine max HOM05D005902 ORTHO05D007182 5.3e-91 337.8 187 88.2
vmacro18518 Vaccinium macrocarpon HOM05D005902 ORTHO05D007182 5.3e-91 337.8 189 86.2
TWI53G1594 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 6.9e-91 337.4 189 86.2
arahy.Tifrunner.gnm1.ann1.YJU2T0 Arachis hypogaea HOM05D005902 ORTHO05D007182 9.1e-91 337.0 191 85.9
Glyma.02G242000 Glycine max HOM05D005902 ORTHO05D007182 1.2e-90 336.7 187 87.2
GSVIVG01026316001 Vitis vinifera HOM05D005902 ORTHO05D007182 1.2e-90 336.7 191 86.9
arahy.Tifrunner.gnm1.ann1.00Q11I Arachis hypogaea HOM05D005902 ORTHO05D007182 1.5e-90 336.3 191 85.3
Medtr5g077260 Medicago truncatula HOM05D005902 ORTHO05D007182 2.0e-90 335.9 191 85.3
TPR.G9985 Trifolium pratense HOM05D005902 ORTHO05D007182 2.0e-90 335.9 191 85.9
MBI13_g21692_MAGBIO Magnolia biondii HOM05D005902 ORTHO05D007182 3.4e-90 335.1 189 85.7
Sed0000187 Sechium edule HOM05D005902 ORTHO05D007182 3.4e-90 335.1 189 85.2
Lalb_Chr17g0345911 Lupinus albus HOM05D005902 ORTHO05D007182 4.5e-90 334.7 193 84.5
Lsat_1_v5_gn_8_111480 Lactuca sativa HOM05D005902 ORTHO05D007182 5.9e-90 334.3 192 86.5
LjContig00141g0001362 Lotus japonicus HOM05D005902 ORTHO05D007182 5.9e-90 334.3 192 84.9
TAR371G0118 Trochodendron aralioides HOM05D005902 ORTHO05D007182 7.7e-90 334.0 189 83.6
Thecc.01G244600 Theobroma cacao HOM05D005902 ORTHO05D007182 1.0e-89 333.6 189 85.2
Ca_05775_v3 Cicer arietinum L. HOM05D005902 ORTHO05D007182 1.3e-89 333.2 191 83.8
PSO063G5475 Papaver somniferum HOM05D005902 ORTHO05D007182 2.2e-89 332.4 189 83.6
Rhsim08G0020200 Rhododendron simsii HOM05D005902 ORTHO05D007182 2.9e-89 332.0 189 84.7
Atru.chr1.1947 Acer truncatum HOM05D005902 ORTHO05D007182 3.8e-89 331.6 189 85.7
CANSAT80G0886 Cannabis sativa HOM05D005902 ORTHO05D007182 3.8e-89 331.6 193 84.5
Hund03335 Selenicereus undatus HOM05D005902 ORTHO05D007182 8.5e-89 330.5 190 82.6
TWI74G1040 Tripterygium wilfordii HOM05D005902 ORTHO05D007182 1.1e-88 330.1 189 83.6
DCAR_010066 Daucus carota HOM05D005902 ORTHO05D007182 1.4e-88 329.7 189 83.6
Oeu009432.1 Olea europaea HOM05D005902 ORTHO05D007182 1.9e-88 329.3 192 84.4
Oeu048966.1 Olea europaea HOM05D005902 ORTHO05D007182 1.9e-88 329.3 192 84.4
Potri.004G082100 Populus trichocarpa HOM05D005902 ORTHO05D007182 1.9e-88 329.3 189 84.1
THA.LOC104822070 Tarenaya hassleriana HOM05D005902 ORTHO05D007182 2.5e-88 328.9 192 82.8
Duzib187G0521 Durio zibethinus HOM05D005902 ORTHO05D007182 7.2e-88 327.4 189 83.6
AUR62009143 Chenopodium quinoa HOM05D005902 ORTHO05D007182 9.4e-88 327.0 189 82.5
PSO782G1752 Papaver somniferum HOM05D005902 ORTHO05D007182 1.2e-87 326.6 189 83.1
AUR62039116 Chenopodium quinoa HOM05D005902 ORTHO05D007182 1.6e-87 326.2 189 82.5
Sabra04G0054600 Salix brachista HOM05D005902 ORTHO05D007182 1.6e-87 326.2 186 84.4
HanXRQChr09g0259821 Helianthus annuus HOM05D005902 ORTHO05D007182 3.6e-87 325.1 192 84.4
Duzib264G0381 Durio zibethinus HOM05D005902 ORTHO05D007182 6.1e-87 324.3 189 82.5
Gohir.D12G002400 Gossypium hirsutum HOM05D005902 ORTHO05D007182 6.1e-87 324.3 189 82.5
Sed0027099 Sechium edule HOM05D005902 ORTHO05D007182 6.1e-87 324.3 188 85.6
AL2G23690 Arabidopsis lyrata HOM05D005902 ORTHO05D007182 7.9e-87 323.9 191 82.2
MSTRG.3687 Avicennia marina HOM05D005902 ORTHO05D007182 7.9e-87 323.9 191 83.2
BcaC08g46080 Brassica carinata HOM05D005902 ORTHO05D007182 7.9e-87 323.9 191 83.8
BolC6t39030H Brassica oleracea HOM05D005902 ORTHO05D007182 7.9e-87 323.9 191 83.8
Cpa.g.sc178.4 Carica papaya HOM05D005902 ORTHO05D007182 7.9e-87 323.9 189 82.0
AT1G66080 Arabidopsis thaliana HOM05D005902 ORTHO05D007182 1.0e-86 323.6 191 82.2
Aa31LG2G2820 Aethionema arabicum HOM05D005902 ORTHO05D007182 2.3e-86 322.4 191 83.2
SGA_v2.0_scaffold45G17133 Striga asiatica HOM05D005902 ORTHO05D007182 2.3e-86 322.4 191 82.2
C02p21750 Brassica napus HOM05D005902 ORTHO05D007182 3.0e-86 322.0 191 82.7
Gohir.A12G002700 Gossypium hirsutum HOM05D005902 ORTHO05D007182 3.0e-86 322.0 189 82.0
C06p39370 Brassica napus HOM05D005902 ORTHO05D007182 3.9e-86 321.6 191 82.7
BraA07t30938Z Brassica rapa HOM05D005902 ORTHO05D007182 3.9e-86 321.6 191 82.7
CDE05G1035 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 3.9e-86 321.6 188 81.9
Carub.0002s1207 Capsella rubella HOM05D005902 ORTHO05D007182 5.2e-86 321.2 191 81.7
CDE05G2622 Ceratophyllum demersum HOM05D005902 ORTHO05D007182 5.2e-86 321.2 188 82.4
SalBow5G2060 Salvia bowleyana HOM05D005902 ORTHO05D007182 5.2e-86 321.2 190 81.6
Aqoxy3G04009 Aquilegia oxysepala HOM05D005902 ORTHO05D007182 6.7e-86 320.9 190 78.9
A02p13450 Brassica napus HOM05D005902 ORTHO05D007182 6.7e-86 320.9 191 82.2
BraA02t06403Z Brassica rapa HOM05D005902 ORTHO05D007182 6.7e-86 320.9 191 82.2
Migut.K01111 Erythranthe guttata HOM05D005902 ORTHO05D007182 1.1e-85 320.1 191 82.2
ATR0598G055 Amborella trichopoda HOM05D005902 ORTHO05D007182 2.0e-85 319.3 189 80.4
EL10Ac2g03874 Beta vulgaris HOM05D005902 ORTHO05D007182 2.0e-85 319.3 190 79.5
BcaB05g24153 Brassica carinata HOM05D005902 ORTHO05D007182 2.6e-85 318.9 191 81.7
MSTRG.15644 Avicennia marina HOM05D005902 ORTHO05D007182 3.3e-85 318.5 191 81.7
A07p33100 Brassica napus HOM05D005902 ORTHO05D007182 3.3e-85 318.5 191 82.2
Sc09g0004530 Simmondsia chinensis HOM05D005902 ORTHO05D007182 3.3e-85 318.5 192 80.2
BcaB03g15295 Brassica carinata HOM05D005902 ORTHO05D007182 4.4e-85 318.2 188 81.9
Gorai.008G001800 Gossypium raimondii HOM05D005902 ORTHO05D007182 9.7e-85 317.0 184 82.6
CARHR058040 Cardamine hirsuta HOM05D005902 ORTHO05D007182 1.7e-84 316.2 191 79.6
unitig_748.g7250 Utricularia gibba HOM05D005902 ORTHO05D007182 3.7e-84 315.1 190 80.0
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 8.2e-84 313.9 188 79.3
Thhalv10019182m.g Eutrema salsugineum HOM05D005902 ORTHO05D007182 1.8e-83 312.8 191 80.6
ECA240G4510 Erigeron canadensis HOM05D005902 ORTHO05D007182 3.1e-83 312.0 194 78.4
COL.COLO4_08161 Corchorus olitorius HOM05D005902 ORTHO05D007182 1.2e-82 310.1 178 84.3
FvH4_1g28840 Fragaria vesca HOM05D005902 ORTHO05D007182 8.8e-78 293.9 145 100.0
TAR629G3091 Trochodendron aralioides HOM05D005902 ORTHO05D007182 6.1e-71 271.2 156 84.0
Ah.10g034300 Amaranthus hybridus HOM05D005902 ORTHO05D007182 1.5e-69 266.5 156 80.8
SMO278G0026 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 4.4e-69 265.0 186 66.1
AagrBONN_evm.TU.Sc2ySwM_344.787 Anthoceros agrestis HOM05D005902 ORTHO05D007182 1.3e-68 263.5 191 67.5
Mapoly0006s0187 Marchantia polymorpha HOM05D005902 ORTHO05D007182 2.4e-67 259.2 189 66.7
Pp3c27_3020 Physcomitrium patens HOM05D005902 ORTHO05D007182 2.7e-66 255.8 190 65.8
Sp5g21150 Schrenkiella parvula HOM05D005902 ORTHO05D007182 3.5e-66 255.4 158 79.1
CSS0046217 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 5.5e-64 248.1 147 83.0
Pp3c16_2230 Physcomitrium patens HOM05D005902 ORTHO05D007182 2.3e-62 242.7 190 62.6
HPP92_002287 Vanilla planifolia HOM05D005902 ORTHO05D007182 1.9e-56 223.0 149 73.2
Pp3c3_23430 Physcomitrium patens HOM05D005902 ORTHO05D007182 5.6e-56 221.5 183 55.7
Pp3c10_12120 Physcomitrium patens HOM05D005902 ORTHO05D007182 4.7e-55 218.4 183 54.6
SMO367G0342 Selaginella moellendorffii HOM05D005902 ORTHO05D007182 1.4e-54 216.9 187 53.5
CBR_g54208 Chara braunii HOM05D005902 ORTHO05D007182 1.6e-50 203.4 185 55.1
Mapoly0001s0397 Marchantia polymorpha HOM05D005902 ORTHO05D007182 7.8e-50 201.1 185 52.4
CBR_g54207 Chara braunii HOM05D005902 ORTHO05D007182 6.6e-49 198.0 181 54.7
CSS0023311 Camellia sinensis var. sinensis HOM05D005902 ORTHO05D007182 5.6e-48 194.9 182 58.8
Zm00001eb010060 Zea mays HOM05D005902 ORTHO05D007182 1.9e-43 179.9 188 53.2
Os03g0237500 Oryza sativa ssp. japonica HOM05D005902 ORTHO05D007182 5.4e-43 178.3 188 53.7
MD03G1052600 Malus domestica HOM05D005902 ORTHO05D007182 5.8e-37 158.3 91 83.5
BcaC03g14730 Brassica carinata HOM05D005902 ORTHO05D007182 9.9e-37 157.5 94 83.0
MD01G1041600 Malus domestica HOM05D005902 ORTHO05D007182 1.5e-29 133.7 79 81.0
Cre16.g691215 Chlamydomonas reinhardtii HOM05D005902 ORTHO05D007182 6.0e-26 121.7 182 35.7
MCO11G231 Micromonas commoda HOM05D005902 ORTHO05D007182 2.5e-24 116.3 183 36.6
MD16G1261800 Malus domestica HOM05D005902 ORTHO05D007182 2.0e-21 106.7 50 96.0
PRCOL_00005463 Prasinoderma coloniale HOM05D005902 ORTHO05D007182 2.4e-11 73.2 150 32.7
CSS0027287 Camellia sinensis var. sinensis HOM05D000006 ORTHO05D000001 6.7e-09 65.1 31 93.5
BolC2t08309H Brassica oleracea HOM05D005902 ORTHO05D007182 8.1e-07 58.2 28 85.7


User provided reference genes

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