Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G4580 Fragaria x ananassa HOM05D001656 ORTHO05D005043 0.0e+00 1293.1 667 100.0
FvH4_5g33570 Fragaria vesca HOM05D001656 ORTHO05D005043 1.3e-309 1065.8 667 83.1
RcHm_v2.0_Chr7g0232401 Rosa chinensis HOM05D001656 ORTHO05D005043 7.2e-284 980.3 557 86.5
RcHm_v2.0_Chr7g0232391 Rosa chinensis HOM05D001656 ORTHO05D005043 8.3e-272 940.3 667 73.0
FAN08G2664 Fragaria x ananassa HOM05D001656 ORTHO05D005043 1.3e-269 932.9 667 74.4
FvH4_5g33550 Fragaria vesca HOM05D001656 ORTHO05D005043 6.4e-248 860.9 561 76.8
RcHm_v2.0_Chr7g0232371 Rosa chinensis HOM05D001656 ORTHO05D005043 9.3e-247 857.1 561 77.4
MD15G1398600 Malus domestica HOM05D001656 ORTHO05D005043 1.1e-239 833.6 561 74.2
Prupe.1G542700 Prunus persica HOM05D001656 ORTHO05D005043 2.4e-239 832.4 667 65.2
MD08G1210700 Malus domestica HOM05D001656 ORTHO05D005043 1.2e-233 813.5 667 64.0
TWI56G0239 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 3.5e-230 802.0 560 71.1
CANSAT25G3831 Cannabis sativa HOM05D001656 ORTHO05D005043 6.0e-230 801.2 668 63.0
FAN18G2419 Fragaria x ananassa HOM05D001656 ORTHO05D003489 6.7e-229 797.7 561 72.7
Duzib093G1672 Durio zibethinus HOM05D001656 ORTHO05D005043 2.1e-227 792.7 560 70.9
QL12p040536 Quercus lobata HOM05D001656 ORTHO05D005043 2.8e-227 792.3 560 71.8
Cpa.g.sc160.9 Carica papaya HOM05D001656 ORTHO05D005043 8.1e-227 790.8 559 70.7
Actinidia19273 Actinidia chinensis HOM05D001656 ORTHO05D005043 1.1e-226 790.4 562 71.7
Gohir.D05G217900 Gossypium hirsutum HOM05D001656 ORTHO05D005043 4.0e-226 788.5 560 70.0
Manes.18G053600 Manihot esculenta HOM05D001656 ORTHO05D005043 1.5e-225 786.6 560 70.7
Duzib041G0753 Durio zibethinus HOM05D001656 ORTHO05D005043 2.0e-225 786.2 560 70.9
Gorai.009G224700 Gossypium raimondii HOM05D001656 ORTHO05D005043 2.6e-225 785.8 560 69.8
Sed0025136 Sechium edule HOM05D001656 ORTHO05D005043 4.5e-225 785.0 560 70.4
FAN08G0520 Fragaria x ananassa HOM05D001656 ORTHO05D003489 1.7e-224 783.1 561 71.8
Gohir.A05G214600 Gossypium hirsutum HOM05D001656 ORTHO05D005043 1.7e-224 783.1 560 69.6
vmacro21383 Vaccinium macrocarpon HOM05D001656 ORTHO05D005043 1.7e-224 783.1 562 70.5
Thecc.08G080000 Theobroma cacao HOM05D001656 ORTHO05D005043 2.9e-224 782.3 560 70.2
GSVIVG01009259001 Vitis vinifera HOM05D001656 ORTHO05D005043 2.9e-224 782.3 560 70.2
CsaV3_6G036230 Cucumis sativus L. HOM05D001656 ORTHO05D005043 8.4e-224 780.8 560 69.8
Atru.chr13.919 Acer truncatum HOM05D001656 ORTHO05D005043 1.4e-223 780.0 560 70.4
Lalb_Chr11g0064681 Lupinus albus HOM05D001656 ORTHO05D005043 4.2e-223 778.5 666 61.0
Cfa020711 Carpinus fangiana HOM05D001656 ORTHO05D005043 9.3e-223 777.3 560 70.4
Actinidia10250 Actinidia chinensis HOM05D001656 ORTHO05D005043 1.2e-222 776.9 562 70.8
Eucgr.F00471 Eucalyptus grandis HOM05D001656 ORTHO05D005043 1.2e-222 776.9 560 68.6
Potri.019G077600 Populus trichocarpa HOM05D001656 ORTHO05D005043 1.0e-221 773.9 560 69.5
arahy.Tifrunner.gnm1.ann1.AQ9I9J Arachis hypogaea HOM05D001656 ORTHO05D005043 1.8e-221 773.1 561 69.7
Haze_19016 Corylus avellana HOM05D001656 ORTHO05D005043 1.8e-221 773.1 560 70.4
THA.LOC104799841 Tarenaya hassleriana HOM05D001656 ORTHO05D005043 3.0e-221 772.3 562 68.7
Ciclev10000739m.g Citrus clementina HOM05D001656 ORTHO05D005043 6.7e-221 771.2 560 70.0
arahy.Tifrunner.gnm1.ann1.UN376R Arachis hypogaea HOM05D001656 ORTHO05D005043 1.5e-220 770.0 561 69.5
Rhsim06G0067500 Rhododendron simsii HOM05D001656 ORTHO05D005043 1.9e-220 769.6 562 69.9
SalBow7G3472 Salvia bowleyana HOM05D001656 ORTHO05D005043 2.5e-220 769.2 562 68.9
Migut.C00423 Erythranthe guttata HOM05D001656 ORTHO05D005043 5.7e-220 768.1 562 69.2
CiPaw.15G153300 Carya illinoinensis HOM05D001656 ORTHO05D005043 9.6e-220 767.3 562 69.8
CAN.G1801.4 Capsicum annuum HOM05D001656 ORTHO05D005043 1.3e-219 766.9 562 68.7
HanXRQChr02g0046991 Helianthus annuus HOM05D001656 ORTHO05D005043 1.6e-219 766.5 561 68.4
SpUn0011_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 1.6e-219 766.5 562 68.1
SpUn0057_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 1.6e-219 766.5 562 68.1
SpUn0134_0020 Schrenkiella parvula HOM05D001656 ORTHO05D005043 1.6e-219 766.5 562 68.1
Lsat_1_v5_gn_2_121140 Lactuca sativa HOM05D001656 ORTHO05D005043 2.1e-219 766.1 563 69.6
Glyma.04G088400 Glycine max HOM05D001656 ORTHO05D005043 3.7e-219 765.4 562 68.5
Aqoxy5G02659 Aquilegia oxysepala HOM05D001656 ORTHO05D005043 8.2e-219 764.2 562 67.3
TWI36G0349 Tripterygium wilfordii HOM05D001656 ORTHO05D005043 8.2e-219 764.2 560 68.2
TAR381G0234 Trochodendron aralioides HOM05D001656 ORTHO05D005043 1.1e-218 763.8 560 68.2
COL.COLO4_35356 Corchorus olitorius HOM05D001656 ORTHO05D005043 1.4e-218 763.5 568 68.3
PSO447G0306 Papaver somniferum HOM05D001656 ORTHO05D005043 1.4e-218 763.5 562 67.1
Solyc04g077040.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 1.4e-218 763.5 563 68.2
ClCG08G008920 Citrullus lanatus HOM05D001656 ORTHO05D005043 2.4e-218 762.7 560 69.6
Nitab4.5_0006011g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 2.4e-218 762.7 578 67.1
Dinv22032 Davidia involucrata HOM05D001656 ORTHO05D005043 5.3e-218 761.5 529 72.2
Hma1.2p1_1078F.1_g254805 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 9.0e-218 760.8 563 68.0
PGR083G1861 Punica granatum HOM05D001656 ORTHO05D005043 9.0e-218 760.8 560 67.7
Carub.0008s0951 Capsella rubella HOM05D001656 ORTHO05D005043 1.2e-217 760.4 562 68.0
AL8G23490 Arabidopsis lyrata HOM05D001656 ORTHO05D005043 2.0e-217 759.6 562 67.8
Lj1g0025512 Lotus japonicus HOM05D001656 ORTHO05D005043 2.0e-217 759.6 560 68.9
Thhalv10013140m.g Eutrema salsugineum HOM05D001656 ORTHO05D005043 2.6e-217 759.2 562 68.1
PGSC0003DMG400004938 Solanum tuberosum HOM05D001656 ORTHO05D005043 2.6e-217 759.2 563 67.7
MBI16_g26737_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 3.8e-216 755.4 560 66.4
Medtr3g110710 Medicago truncatula HOM05D001656 ORTHO05D005043 3.8e-216 755.4 666 59.8
Ah.11g038980 Amaranthus hybridus HOM05D001656 ORTHO05D005043 5.0e-216 755.0 560 67.3
SGA_v2.0_scaffold14G07067 Striga asiatica HOM05D001656 ORTHO05D005043 6.5e-216 754.6 562 67.4
Sabra19G0088700 Salix brachista HOM05D001656 ORTHO05D005043 8.4e-216 754.2 560 67.7
AT5G49650 Arabidopsis thaliana HOM05D001656 ORTHO05D005043 1.1e-215 753.8 562 66.9
MSTRG.915 Avicennia marina HOM05D001656 ORTHO05D005043 3.2e-215 752.3 562 67.4
Nitab4.5_0003791g0030 Nicotiana tabacum HOM05D001656 ORTHO05D005043 3.2e-215 752.3 563 67.5
Phvul.009G114000 Phaseolus vulgaris HOM05D001656 ORTHO05D005043 4.2e-215 751.9 560 67.3
Lj4A79T57 Lonicera japonica HOM05D001656 ORTHO05D005043 1.6e-214 750.0 562 67.3
AUR62034954 Chenopodium quinoa HOM05D001656 ORTHO05D005043 4.6e-214 748.4 560 67.3
DCAR_020038 Daucus carota HOM05D001656 ORTHO05D005043 4.6e-214 748.4 562 67.3
BcaC01g01862 Brassica carinata HOM05D001656 ORTHO05D005043 1.0e-213 747.3 562 66.9
AUR62035764 Chenopodium quinoa HOM05D001656 ORTHO05D005043 1.3e-213 746.9 560 67.3
VMungo1309G0971 Vigna mungo HOM05D001656 ORTHO05D005043 1.3e-213 746.9 560 67.5
Ca_15555_v3 Cicer arietinum L. HOM05D001656 ORTHO05D005043 3.0e-213 745.7 561 67.0
Sopen00g004570 Solanum pennellii HOM05D001656 ORTHO05D005043 3.0e-213 745.7 560 66.8
Sopen00g003720 Solanum pennellii HOM05D001656 ORTHO05D005043 8.7e-213 744.2 559 66.7
CAN.G1801.5 Capsicum annuum HOM05D001656 ORTHO05D005043 1.5e-212 743.4 560 66.6
TPR.G12406 Trifolium pratense HOM05D001656 ORTHO05D005043 1.5e-212 743.4 561 67.0
Solyc04g077030.3 Solanum lycopersicum HOM05D001656 ORTHO05D005043 1.9e-212 743.0 578 65.4
BcaB01g00958 Brassica carinata HOM05D001656 ORTHO05D005043 4.3e-212 741.9 563 66.3
ECA247G3818 Erigeron canadensis HOM05D001656 ORTHO05D005043 5.7e-212 741.5 559 67.6
Lj4C747T6 Lonicera japonica HOM05D001656 ORTHO05D005043 5.7e-212 741.5 687 58.5
A06p20550 Brassica napus HOM05D001656 ORTHO05D005043 1.6e-211 740.0 568 66.2
Nitab4.5_0010814g0010 Nicotiana tabacum HOM05D001656 ORTHO05D005043 2.2e-211 739.6 587 64.7
Peaxi162Scf01174g00119 Petunia axillaris HOM05D001656 ORTHO05D005043 3.7e-211 738.8 538 69.1
Aa31LG3G8940 Aethionema arabicum HOM05D001656 ORTHO05D005043 4.8e-211 738.4 575 65.2
Cc10_g08000 Coffea canephora HOM05D001656 ORTHO05D005043 8.2e-211 737.6 562 66.2
Nn6g32050 Nelumbo nucifera HOM05D001656 ORTHO05D005043 1.1e-210 737.3 560 66.4
C03p71250 Brassica napus HOM05D001656 ORTHO05D005043 1.8e-210 736.5 580 64.8
BolC3t19406H Brassica oleracea HOM05D001656 ORTHO05D005043 1.2e-209 733.8 568 65.7
Oeu035948.1 Olea europaea HOM05D001656 ORTHO05D005043 1.3e-208 730.3 562 65.8
MSTRG.914 Avicennia marina HOM05D001656 ORTHO05D005043 2.7e-206 722.6 562 64.9
Cc10_g08010 Coffea canephora HOM05D001656 ORTHO05D005043 7.9e-206 721.1 560 65.4
Oeu046408.1 Olea europaea HOM05D001656 ORTHO05D005043 2.0e-204 716.5 530 68.9
ATR0315G023 Amborella trichopoda HOM05D001656 ORTHO05D005043 9.7e-204 714.1 557 62.7
Os07g0640200 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 6.3e-203 711.4 564 62.9
MELO3C019781.2 Cucumis melo HOM05D001656 ORTHO05D005043 5.3e-202 708.4 564 65.8
Zm00001eb109880 Zea mays HOM05D001656 ORTHO05D005043 1.2e-201 707.2 564 62.6
ECA232G0787 Erigeron canadensis HOM05D001656 ORTHO05D005043 2.0e-201 706.4 560 64.8
CDE02G2348 Ceratophyllum demersum HOM05D001656 ORTHO05D005043 3.8e-200 702.2 561 62.7
Manes.05G186400 Manihot esculenta HOM05D001656 ORTHO05D005043 8.5e-200 701.0 513 68.8
Hund05240 Selenicereus undatus HOM05D001656 ORTHO05D005043 3.2e-199 699.1 562 63.5
DCAR_009544 Daucus carota HOM05D001656 ORTHO05D005043 1.0e-197 694.1 562 64.1
EL10Ac1g02312 Beta vulgaris HOM05D001656 ORTHO05D005043 1.5e-196 690.3 561 62.4
Hund05241 Selenicereus undatus HOM05D001656 ORTHO05D005043 1.5e-196 690.3 603 60.4
PSO210G2052 Papaver somniferum HOM05D001656 ORTHO05D005043 1.3e-195 687.2 513 66.3
Nitab4.5_0003791g0040 Nicotiana tabacum HOM05D001656 ORTHO05D005043 3.7e-195 685.6 603 60.2
SEGI_21864 Sequoiadendron giganteum HOM05D001656 ORTHO05D005043 2.0e-193 679.9 560 60.9
EL10Ac1g02313 Beta vulgaris HOM05D001656 ORTHO05D005043 1.8e-186 656.8 560 60.9
Os12g0633000 Oryza sativa ssp. japonica HOM05D001656 ORTHO05D005043 7.7e-185 651.4 566 58.3
Nn5g30719 Nelumbo nucifera HOM05D001656 ORTHO05D005043 4.2e-183 645.6 433 72.1
Pp3c13_15890 Physcomitrium patens HOM05D001656 ORTHO05D005043 2.8e-179 632.9 556 57.4
Pp3c4_10480 Physcomitrium patens HOM05D001656 ORTHO05D005043 2.0e-164 583.6 558 53.4
Mapoly0152s0012 Marchantia polymorpha HOM05D001656 ORTHO05D005043 7.5e-164 581.6 556 54.1
Psat5g091440 Pisum sativum HOM05D001656 ORTHO05D005043 1.7e-163 580.5 375 74.1
Sc26g0004310 Simmondsia chinensis HOM05D001656 ORTHO05D005043 4.9e-163 578.9 375 74.9
MBI16_g05037_MAGBIO Magnolia biondii HOM05D001656 ORTHO05D005043 7.5e-156 555.1 421 65.8
SMO339G0045 Selaginella moellendorffii HOM05D001656 ORTHO05D005043 1.2e-150 537.7 567 51.7
Sc08g0003410 Simmondsia chinensis HOM05D001656 ORTHO05D005043 1.2e-150 537.7 375 70.9
Pp3c4_10497 Physcomitrium patens HOM05D001656 ORTHO05D005043 1.8e-149 533.9 509 53.6
Dinv44906 Davidia involucrata HOM05D001656 ORTHO05D005043 7.1e-146 521.9 326 77.3
AagrBONN_evm.TU.Sc2ySwM_228.1076 Anthoceros agrestis HOM05D001656 ORTHO05D005043 1.7e-144 517.3 558 50.5
FAN04G1176 Fragaria x ananassa HOM05D001656 ORTHO05D005043 6.0e-137 492.3 357 70.0
Oeu034830.1 Olea europaea HOM05D001656 ORTHO05D005043 8.4e-131 471.9 288 79.5
AUR62034953 Chenopodium quinoa HOM05D001656 ORTHO05D005043 1.5e-111 407.9 272 70.2
CARHR293240 Cardamine hirsuta HOM05D001656 ORTHO05D005043 6.2e-110 402.5 343 59.5
unitig_736.g22951 Utricularia gibba HOM05D001656 ORTHO05D005043 7.6e-108 395.6 346 59.0
Hma1.2p1_1281F.1_g272610 Hydrangea macrophylla HOM05D001656 ORTHO05D005043 1.9e-106 391.0 313 64.2
SpUn0078_0010 Schrenkiella parvula HOM05D001656 ORTHO05D005043 3.9e-96 356.7 226 76.1
Oeu011631.2 Olea europaea HOM05D001656 ORTHO05D005043 1.9e-90 337.8 218 75.2
Oeu035949.1 Olea europaea HOM05D001656 ORTHO05D005043 1.0e-88 332.0 293 60.1
HPP92_019867 Vanilla planifolia HOM05D001656 ORTHO05D005043 5.7e-87 326.2 218 72.9
HPP92_028451 Vanilla planifolia HOM05D001656 ORTHO05D005043 9.7e-87 325.5 297 57.6
Glyma.06G090401 Glycine max HOM05D001656 ORTHO05D005043 4.7e-81 306.6 244 63.5
CBR_g40751 Chara braunii HOM05D001656 ORTHO05D005043 5.0e-75 286.6 248 58.9
Atru.chr7.541 Acer truncatum HOM05D001656 ORTHO05D005043 1.2e-55 222.2 192 60.9
unitig_736.g22950 Utricularia gibba HOM05D001656 ORTHO05D005043 7.0e-53 213.0 141 73.0
Gorai.010G169800 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.6e-52 211.8 138 73.2
Gohir.D06G145701 Gossypium hirsutum HOM05D001656 ORTHO05D005043 2.7e-52 211.1 137 72.3
Gohir.D13G037000 Gossypium hirsutum HOM05D001656 ORTHO05D005043 5.9e-52 209.9 139 71.2
Gorai.013G041400 Gossypium raimondii HOM05D001656 ORTHO05D005043 1.0e-51 209.1 139 70.5
Gorai.010G172000 Gossypium raimondii HOM05D001656 ORTHO05D005043 2.2e-46 191.4 128 70.3
Dinv26408 Davidia involucrata HOM05D001656 ORTHO05D005043 7.0e-37 159.8 98 74.5
Dinv14696 Davidia involucrata HOM05D001656 ORTHO05D005043 3.5e-36 157.5 116 64.7
Atru.chr13.2595 Acer truncatum HOM05D001656 ORTHO05D005043 6.6e-27 126.7 106 62.3
Gohir.D08G147150 Gossypium hirsutum HOM05D001656 ORTHO05D005043 8.6e-19 99.8 63 71.4
Gorai.004G152700 Gossypium raimondii HOM05D001656 ORTHO05D005043 4.3e-18 97.4 63 69.8
RcHm_v2.0_Chr2g0168121 Rosa chinensis HOM05D004344 ORTHO05D021344 1.8e-16 92.0 54 77.8
HanXRQChr08g0210401 Helianthus annuus HOM05D001656 ORTHO05D005043 1.3e-14 85.9 57 68.4
Cc01_g04230 Coffea canephora HOM05D001656 ORTHO05D005043 5.4e-13 80.5 63 60.3
Cc04_g15120 Coffea canephora HOM05D001656 ORTHO05D005043 7.1e-13 80.1 63 60.3
Cre07.g321100 Chlamydomonas reinhardtii HOM05D001656 ORTHO05D014814 2.1e-12 78.6 489 22.5
Cc02_g27750 Coffea canephora HOM05D001656 ORTHO05D005043 2.7e-12 78.2 63 58.7
Cc11_g07750 Coffea canephora HOM05D001656 ORTHO05D005043 4.6e-12 77.4 63 58.7
FvH4_4g27790 Fragaria vesca HOM05D000067 ORTHO05D000097 1.7e-11 75.5 44 75.0
MCO10G102 Micromonas commoda HOM05D001656 ORTHO05D014814 3.9e-11 74.3 428 24.1
FAN09G4010 Fragaria x ananassa HOM05D011708 ORTHO05D005043 6.6e-11 73.6 37 91.9
FvH4_5g33600 Fragaria vesca HOM05D001656 ORTHO05D005043 1.9e-10 72.0 49 67.3
FAN18G3130 Fragaria x ananassa HOM05D001656 ORTHO05D005043 1.9e-10 72.0 49 67.3
Cc08_g09760 Coffea canephora HOM05D001656 ORTHO05D005043 3.6e-09 67.8 54 61.1
CBR_g50937 Chara braunii HOM05D001656 ORTHO05D005043 1.5e-07 62.4 58 51.7


User provided reference genes

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