Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G4575 Fragaria x ananassa HOM05D052792 ORTHO05D046315 2.5e-59 231.9 115 100.0
FvH4_5g14671 Fragaria vesca HOM05D052792 ORTHO05D046315 1.2e-56 223.0 114 96.5
RcHm_v2.0_Chr7g0181731 Rosa chinensis HOM05D000001 ORTHO05D006025 1.3e-20 103.2 75 68.0
Haze_07307 Corylus avellana HOM05D000001 ORTHO05D006025 4.6e-13 78.2 73 53.4
Cfa018923 Carpinus fangiana HOM05D000001 ORTHO05D006025 2.3e-12 75.9 67 55.2
Lj2g0004488 Lotus japonicus HOM05D000001 ORTHO05D006025 8.8e-12 73.9 68 55.9
Prupe.5G195700 Prunus persica HOM05D000001 ORTHO05D006025 4.3e-11 71.6 41 73.2
Sabra15G0029000 Salix brachista HOM05D000001 ORTHO05D006025 1.3e-10 70.1 41 73.2
MD06G1195900 Malus domestica HOM05D000001 ORTHO05D006025 2.2e-10 69.3 41 70.7
GSVIVG01007983001 Vitis vinifera HOM05D000001 ORTHO05D006025 2.8e-10 68.9 70 50.0
Lj5P109T17 Lonicera japonica HOM05D000001 ORTHO05D010847 3.7e-10 68.6 41 70.7
Potri.015G034900 Populus trichocarpa HOM05D000001 ORTHO05D006025 4.8e-10 68.2 41 70.7
Medtr3g005330 Medicago truncatula HOM05D000001 ORTHO05D006025 1.1e-09 67.0 47 66.0
QL10p017329 Quercus lobata HOM05D000001 ORTHO05D006025 1.8e-09 66.2 78 46.2
Ca_21432_v3 Cicer arietinum L. HOM05D000001 ORTHO05D006025 2.4e-09 65.9 67 52.2
Lalb_Chr16g0384191 Lupinus albus HOM05D000001 ORTHO05D006025 2.4e-09 65.9 44 63.6
Actinidia37616 Actinidia chinensis HOM05D000001 ORTHO05D006025 3.1e-09 65.5 41 63.4
CSS0041874 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D006025 3.1e-09 65.5 48 60.4
ClCG06G016090 Citrullus lanatus HOM05D000001 ORTHO05D006025 3.1e-09 65.5 41 65.9
TAR629G3207 Trochodendron aralioides HOM05D000001 ORTHO05D006025 3.1e-09 65.5 40 67.5
TPR.G25504 Trifolium pratense HOM05D000001 ORTHO05D006025 4.1e-09 65.1 47 66.0
Manes.06G090600 Manihot esculenta HOM05D000001 ORTHO05D006025 5.3e-09 64.7 41 65.9
Ciclev10020040m.g Citrus clementina HOM05D000001 ORTHO05D006025 6.9e-09 64.3 52 55.8
CsaV3_1G002450 Cucumis sativus L. HOM05D000001 ORTHO05D006025 6.9e-09 64.3 41 65.9
CANSAT25G0297 Cannabis sativa HOM05D000001 ORTHO05D006025 9.1e-09 63.9 41 68.3
Nn1g04529 Nelumbo nucifera HOM05D000001 ORTHO05D006025 9.1e-09 63.9 40 65.0
Sed0014076 Sechium edule HOM05D000001 ORTHO05D006025 1.2e-08 63.5 41 63.4
VMungo1215G0477 Vigna mungo HOM05D000001 ORTHO05D006025 2.0e-08 62.8 47 59.6
Hma1.2p1_0060F.1_g033620 Hydrangea macrophylla HOM05D000001 ORTHO05D006025 2.6e-08 62.4 41 61.0
Nn4g23223 Nelumbo nucifera HOM05D000001 ORTHO05D006025 2.6e-08 62.4 40 62.5
Rhsim08G0153000 Rhododendron simsii HOM05D000001 ORTHO05D006025 2.6e-08 62.4 41 58.5
CiPaw.11G046400 Carya illinoinensis HOM05D000001 ORTHO05D006025 3.4e-08 62.0 41 65.9
Glyma.13G001700 Glycine max HOM05D000001 ORTHO05D006025 3.4e-08 62.0 41 68.3
PGR083G0331 Punica granatum HOM05D000001 ORTHO05D006025 5.9e-08 61.2 41 61.0
Sc12g0006450 Simmondsia chinensis HOM05D000001 ORTHO05D006025 2.2e-07 59.3 45 57.8
Glyma.20G068100 Glycine max HOM05D000001 ORTHO05D006025 5.0e-07 58.2 41 61.0
DCAR_019654 Daucus carota HOM05D000001 ORTHO05D006025 8.5e-07 57.4 41 61.0
DCAR_016570 Daucus carota HOM05D000001 ORTHO05D006025 1.1e-06 57.0 41 58.5
Eucgr.B00528 Eucalyptus grandis HOM05D000001 ORTHO05D006025 1.1e-06 57.0 41 58.5
TWI81G0257 Tripterygium wilfordii HOM05D000001 ORTHO05D006025 1.1e-06 57.0 41 58.5
Ciclev10028449m.g Citrus clementina HOM05D000001 ORTHO05D009745 2.5e-06 55.8 73 42.5
Lsat_1_v5_gn_5_20780 Lactuca sativa HOM05D000001 ORTHO05D006025 2.5e-06 55.8 39 61.5
VMungo0720G2774 Vigna mungo HOM05D000001 ORTHO05D000003 3.2e-06 55.5 71 42.3
Glyma.13G313200 Glycine max HOM05D000001 ORTHO05D009745 5.5e-06 54.7 75 37.3
Lj3g0019604 Lotus japonicus HOM05D000001 ORTHO05D009745 7.2e-06 54.3 75 38.7
Nn7g38365 Nelumbo nucifera HOM05D000001 ORTHO05D000003 7.2e-06 54.3 75 40.0
Phvul.007G044100 Phaseolus vulgaris HOM05D000001 ORTHO05D000003 7.2e-06 54.3 72 40.3
Haze_11241 Corylus avellana HOM05D000001 ORTHO05D000003 9.4e-06 53.9 70 38.6
Glyma.10G258200 Glycine max HOM05D000001 ORTHO05D000003 9.4e-06 53.9 76 38.2
Glyma.20G132900 Glycine max HOM05D000001 ORTHO05D000003 9.4e-06 53.9 76 38.2


User provided reference genes

Program Settings