Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G4438 Fragaria x ananassa HOM05D007421 ORTHO05D009203 9.2e-129 463.8 269 100.0
FvH4_5g30620 Fragaria vesca HOM05D007421 ORTHO05D009203 4.3e-126 454.9 269 97.8
FAN04G0435 Fragaria x ananassa HOM05D007421 ORTHO05D009203 2.8e-109 399.1 270 90.0
RcHm_v2.0_Chr7g0225501 Rosa chinensis HOM05D007421 ORTHO05D009203 9.3e-97 357.5 273 76.2
Prupe.1G559900 Prunus persica HOM05D007421 ORTHO05D009203 1.0e-42 177.9 299 49.8
FvH4_6g27415 Fragaria vesca HOM05D007421 ORTHO05D009203 5.2e-39 165.6 120 78.3
RcHm_v2.0_Chr5g0049711 Rosa chinensis HOM05D007421 ORTHO05D009203 1.1e-36 157.9 248 46.8
MD08G1222100 Malus domestica HOM05D007421 ORTHO05D009203 9.5e-33 144.8 292 41.1
RcHm_v2.0_Chr7g0236151 Rosa chinensis HOM05D007421 ORTHO05D009203 2.8e-32 143.3 237 46.8
CiPaw.06G151100 Carya illinoinensis HOM05D007421 ORTHO05D009203 1.7e-29 134.0 289 39.1
Cfa005578 Carpinus fangiana HOM05D007421 ORTHO05D009203 4.9e-29 132.5 270 41.1
Haze_10776 Corylus avellana HOM05D007421 ORTHO05D009203 2.4e-28 130.2 274 39.8
Manes.11G148500 Manihot esculenta HOM05D007421 ORTHO05D009203 3.4e-22 109.8 316 33.5
Cc02_g21850 Coffea canephora HOM05D007421 ORTHO05D009203 2.9e-21 106.7 303 33.3
Rhsim11G0134600 Rhododendron simsii HOM05D007421 ORTHO05D009203 2.4e-20 103.6 324 34.3
RcHm_v2.0_Chr0c11g0499381 Rosa chinensis HOM05D007421 ORTHO05D009203 2.4e-20 103.6 133 53.4
Dinv24220 Davidia involucrata HOM05D007421 ORTHO05D009203 5.4e-20 102.4 322 31.7
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 7.0e-20 102.1 240 36.7
Nn5g28883 Nelumbo nucifera HOM05D007421 ORTHO05D009203 9.2e-20 101.7 238 36.1
RcHm_v2.0_Chr7g0236451 Rosa chinensis HOM05D007421 ORTHO05D009203 2.7e-19 100.1 131 52.7
RcHm_v2.0_Chr7g0236491 Rosa chinensis HOM05D007421 ORTHO05D009203 2.7e-19 100.1 131 52.7
Nitab4.5_0000078g0170 Nicotiana tabacum HOM05D007421 ORTHO05D009203 5.9e-19 99.0 288 44.1
QL11p019404 Quercus lobata HOM05D007421 ORTHO05D009203 7.8e-19 98.6 266 35.0
TAR628G0675 Trochodendron aralioides HOM05D007421 ORTHO05D009203 1.7e-18 97.4 230 37.0
Nitab4.5_0011639g0020 Nicotiana tabacum HOM05D007421 ORTHO05D009203 2.3e-18 97.1 291 37.1
Potri.005G176900 Populus trichocarpa HOM05D007421 ORTHO05D009203 3.9e-18 96.3 310 31.6
CSS0030012 Camellia sinensis var. sinensis HOM05D007421 ORTHO05D009203 5.0e-18 95.9 285 33.3
CSS0048527 Camellia sinensis var. sinensis HOM05D007421 ORTHO05D009203 5.0e-18 95.9 285 33.3
COL.COLO4_20870 Corchorus olitorius HOM05D007321 ORTHO05D009244 5.0e-18 95.9 306 30.1
Actinidia00249 Actinidia chinensis HOM05D007421 ORTHO05D009203 1.1e-17 94.7 291 35.1
TWI59G0537 Tripterygium wilfordii HOM05D007421 ORTHO05D009203 2.5e-17 93.6 276 33.7
CAN.G1034.36 Capsicum annuum HOM05D007421 ORTHO05D009203 4.3e-17 92.8 272 36.0
Thecc.02G143500 Theobroma cacao HOM05D007421 ORTHO05D009203 4.3e-17 92.8 299 31.8
Nitab4.5_0004176g0040 Nicotiana tabacum HOM05D007421 ORTHO05D009203 5.6e-17 92.4 287 42.2
Sabra05G0133500 Salix brachista HOM05D007421 ORTHO05D009203 5.6e-17 92.4 315 31.1
vmacro01809 Vaccinium macrocarpon HOM05D007421 ORTHO05D009203 1.6e-16 90.9 313 37.1
Solyc10g047040.3 Solanum lycopersicum HOM05D007421 ORTHO05D009203 3.6e-16 89.7 265 40.4
Sopen10g016990 Solanum pennellii HOM05D007421 ORTHO05D009203 3.6e-16 89.7 240 40.8
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 4.7e-16 89.4 235 38.7
RcHm_v2.0_Chr7g0236421 Rosa chinensis HOM05D007421 ORTHO05D009203 1.1e-15 88.2 148 45.3
RcHm_v2.0_Chr7g0231151 Rosa chinensis HOM05D007421 ORTHO05D009203 2.3e-15 87.0 148 44.6
FAN08G3106 Fragaria x ananassa HOM05D007421 ORTHO05D009203 3.1e-15 86.7 160 40.6
Gohir.A03G171600 Gossypium hirsutum HOM05D007421 ORTHO05D009203 1.5e-14 84.3 310 30.3
Gorai.005G217800 Gossypium raimondii HOM05D007421 ORTHO05D009203 1.5e-14 84.3 310 29.4
CANSAT11G0077 Cannabis sativa HOM05D007421 ORTHO05D009203 3.4e-14 83.2 223 33.6
EL10Ac8g19356 Beta vulgaris HOM05D007421 ORTHO05D009203 4.4e-14 82.8 251 29.5
Cpa.g.sc0.12 Carica papaya HOM05D007421 ORTHO05D009203 9.8e-14 81.6 318 31.8
DCAR_029217 Daucus carota HOM05D007421 ORTHO05D009203 2.2e-13 80.5 288 34.0
Gorai.013G063400 Gossypium raimondii HOM05D007421 ORTHO05D009203 2.2e-13 80.5 281 31.0
PGSC0003DMG400024171 Solanum tuberosum HOM05D007421 ORTHO05D009203 2.9e-13 80.1 255 44.3
Atru.chr6.906 Acer truncatum HOM05D007421 ORTHO05D009203 3.7e-13 79.7 243 32.9
Gohir.A13G065600 Gossypium hirsutum HOM05D007421 ORTHO05D009203 4.9e-13 79.3 279 30.8
Ca_18335_v3 Cicer arietinum L. HOM05D007421 ORTHO05D009203 1.9e-12 77.4 234 29.9
FvH4_5g35251 Fragaria vesca HOM05D007421 ORTHO05D009203 3.2e-12 76.6 145 41.4
GSVIVG01022264001 Vitis vinifera HOM05D007421 ORTHO05D009203 2.7e-11 73.6 130 37.7
Oeu000232.1 Olea europaea HOM05D007421 ORTHO05D009203 4.6e-11 72.8 328 29.3
ClCG09G021300 Citrullus lanatus HOM05D007421 ORTHO05D009203 1.3e-10 71.2 234 29.5
TPR.G10446 Trifolium pratense HOM05D007421 ORTHO05D009203 1.3e-10 71.2 284 28.9
Lj9C318G13 Lonicera japonica HOM05D007421 ORTHO05D009203 2.3e-10 70.5 189 34.9
Gohir.D02G194950 Gossypium hirsutum HOM05D007421 ORTHO05D009203 5.0e-10 69.3 309 26.9
Sc08g0004770 Simmondsia chinensis HOM05D007421 ORTHO05D009203 5.0e-10 69.3 255 34.5
Lj4g0022412 Lotus japonicus HOM05D007421 ORTHO05D009203 6.6e-10 68.9 243 30.0
CsaV3_7G012710 Cucumis sativus L. HOM05D007421 ORTHO05D009203 1.1e-09 68.2 235 30.6
Medtr4g094292 Medicago truncatula HOM05D007421 ORTHO05D009203 1.5e-09 67.8 58 51.7
Gohir.D13G056100 Gossypium hirsutum HOM05D007421 ORTHO05D009203 2.5e-09 67.0 205 33.2
Potri.002G084750 Populus trichocarpa HOM05D007421 ORTHO05D009203 2.5e-09 67.0 286 28.7
Sed0000945 Sechium edule HOM05D007421 ORTHO05D009203 4.3e-09 66.2 236 30.1
Glyma.08G075000 Glycine max HOM05D007421 ORTHO05D009203 5.6e-09 65.9 231 27.7
Hma1.2p1_0012F.1_g007610 Hydrangea macrophylla HOM05D007421 ORTHO05D009203 5.6e-09 65.9 55 60.0
Aqoxy5G02013 Aquilegia oxysepala HOM05D007421 ORTHO05D009203 1.6e-08 64.3 248 30.2
DCAR_001801 Daucus carota HOM05D007421 ORTHO05D009203 4.7e-08 62.8 55 56.4
Eucgr.I02692 Eucalyptus grandis HOM05D007421 ORTHO05D009203 1.1e-07 61.6 51 56.9
Medtr4g094298 Medicago truncatula HOM05D007421 ORTHO05D009203 1.1e-07 61.6 54 59.3
VMungo0251G1640 Vigna mungo HOM05D007421 ORTHO05D009203 1.8e-07 60.8 226 27.4
Ca_02335_v3 Cicer arietinum L. HOM05D007421 ORTHO05D009203 4.0e-07 59.7 51 54.9
Phvul.002G206600 Phaseolus vulgaris HOM05D007421 ORTHO05D009203 6.8e-07 58.9 210 28.6
Psat7g097480 Pisum sativum HOM05D007421 ORTHO05D009203 8.9e-07 58.5 236 28.0
Migut.B00639 Erythranthe guttata HOM05D007421 ORTHO05D009203 1.2e-06 58.2 52 51.9
Ciclev10003479m.g Citrus clementina HOM05D007421 ORTHO05D009203 2.0e-06 57.4 271 27.3
Lalb_Chr12g0208511 Lupinus albus HOM05D007421 ORTHO05D009203 2.0e-06 57.4 57 43.9
Glyma.05G120200 Glycine max HOM05D007421 ORTHO05D009203 3.4e-06 56.6 248 37.9


User provided reference genes

Program Settings