Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.5e-283 978.8 474 100.0
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.2e-280 969.1 475 99.2
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.4e-273 945.7 474 97.0
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 3.8e-271 937.6 475 96.4
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 6.8e-260 900.2 464 95.5
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.8e-253 878.2 475 91.8
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 6.1e-253 877.1 478 90.6
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 1.6e-216 756.1 472 78.4
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 2.9e-210 735.3 464 76.5
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 1.2e-208 729.9 459 78.2
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 5.6e-206 721.1 463 74.5
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 7.4e-206 720.7 460 75.4
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 1.3e-205 719.9 476 73.3
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 1.6e-205 719.5 465 74.6
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 6.2e-205 717.6 460 74.6
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 6.2e-205 717.6 465 74.4
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 1.4e-204 716.5 466 73.6
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 1.4e-204 716.5 466 73.6
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 2.4e-204 715.7 452 75.7
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 1.5e-203 713.0 471 73.9
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 2.0e-203 712.6 462 74.9
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 2.6e-203 712.2 469 74.0
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 2.6e-203 712.2 462 74.2
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 5.8e-203 711.1 466 72.7
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 2.2e-202 709.1 461 74.6
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 4.9e-202 708.0 477 73.2
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 4.9e-202 708.0 464 74.1
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 1.4e-201 706.4 462 74.5
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 3.2e-201 705.3 462 73.6
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 1.8e-199 699.5 466 71.5
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 6.7e-199 697.6 469 72.1
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 1.9e-198 696.0 464 72.8
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 7.4e-198 694.1 461 72.2
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 8.1e-197 690.6 464 70.9
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 4.0e-196 688.3 464 70.5
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 4.5e-195 684.9 469 71.2
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 7.6e-195 684.1 463 70.0
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 3.8e-194 681.8 459 71.7
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 6.5e-194 681.0 466 70.6
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 1.1e-193 680.2 442 74.7
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 1.9e-193 679.5 443 74.3
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 2.5e-193 679.1 460 70.2
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 7.1e-193 677.6 462 70.1
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 1.6e-192 676.4 442 74.4
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 2.1e-192 676.0 462 69.9
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.0e-191 673.7 462 69.7
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 3.0e-191 672.2 464 69.0
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 5.1e-191 671.4 442 73.5
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 3.3e-190 668.7 469 67.6
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 5.7e-190 667.9 442 72.6
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 7.4e-190 667.5 442 73.3
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 1.3e-189 666.8 442 72.9
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 1.6e-189 666.4 460 68.9
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 1.6e-189 666.4 480 68.3
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 2.8e-189 665.6 471 69.6
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 2.8e-189 665.6 461 69.2
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 3.1e-188 662.1 457 69.8
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 2.0e-187 659.4 446 70.9
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 2.6e-187 659.1 468 67.9
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 3.4e-187 658.7 450 71.8
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 7.6e-187 657.5 463 69.5
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 1.0e-186 657.1 463 67.6
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 3.8e-186 655.2 477 66.9
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 5.0e-186 654.8 469 68.2
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 1.9e-185 652.9 468 68.8
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 3.2e-185 652.1 390 79.0
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 1.8e-183 646.4 457 67.6
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 3.9e-183 645.2 458 67.2
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 1.3e-181 640.2 474 65.2
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 3.7e-181 638.6 487 65.5
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 5.3e-180 634.8 465 67.5
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 9.1e-180 634.0 461 67.2
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 8.5e-178 627.5 457 68.1
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 1.2e-176 623.6 492 65.7
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 6.1e-176 621.3 423 70.7
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 1.8e-175 619.8 466 65.0
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 2.3e-175 619.4 466 67.6
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 1.1e-174 617.1 498 61.4
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 3.3e-174 615.5 478 63.2
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 7.4e-174 614.4 470 64.5
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 1.3e-173 613.6 470 62.6
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 2.4e-172 609.4 455 64.8
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 4.1e-172 608.6 468 63.2
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 9.1e-172 607.4 472 62.7
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.2e-171 607.1 465 63.2
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 1.5e-171 606.7 472 65.0
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 2.6e-171 605.9 465 62.8
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 4.5e-171 605.1 461 64.0
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 3.2e-169 599.0 467 62.7
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 5.5e-169 598.2 394 72.1
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 9.4e-169 597.4 468 65.0
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 1.6e-168 596.7 467 62.3
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 2.1e-168 596.3 468 62.6
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 6.1e-168 594.7 378 75.4
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 1.0e-167 594.0 469 62.3
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 1.4e-167 593.6 469 62.3
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 1.4e-167 593.6 469 62.3
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 2.3e-167 592.8 358 78.2
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 5.2e-167 591.7 470 62.1
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 9.7e-166 587.4 475 61.3
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 3.5e-163 578.9 461 61.6
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 1.7e-162 576.6 463 59.0
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 4.2e-161 572.0 517 56.9
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 5.5e-161 571.6 475 58.9
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 9.4e-161 570.9 408 67.6
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 2.2e-157 559.7 395 71.1
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 8.5e-154 547.7 441 62.1
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 5.5e-153 545.0 418 63.2
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 7.2e-153 544.7 493 56.8
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 1.3e-149 533.9 441 61.7
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 2.8e-149 532.7 450 54.9
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 1.2e-147 527.3 482 57.7
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 3.8e-146 522.3 473 55.2
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 1.5e-145 520.4 440 54.5
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 6.1e-144 515.0 340 72.1
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 6.1e-144 515.0 471 51.8
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 9.5e-129 464.5 494 52.8
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 1.7e-125 453.8 439 54.4
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 5.4e-124 448.7 305 73.4
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 5.8e-118 428.7 205 95.6
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 1.9e-116 423.7 276 75.7
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 2.4e-116 423.3 476 50.2
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 5.4e-116 422.2 356 58.1
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 1.6e-115 420.6 356 56.5
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 4.6e-115 419.1 305 67.9
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 1.0e-114 417.9 324 64.2
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 9.5e-113 411.4 473 51.2
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 9.2e-108 394.8 431 51.7
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 8.7e-106 388.3 367 48.2
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 3.3e-105 386.3 247 83.0
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 7.6e-102 375.2 288 68.8
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 9.3e-92 341.7 419 43.4
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 2.2e-85 320.5 382 42.1
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 1.1e-76 291.6 175 80.6
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 8.2e-56 222.2 119 83.2
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 8.5e-53 212.2 195 55.4
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 2.7e-51 207.2 245 51.4
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 6.7e-50 202.6 201 51.2
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 3.2e-44 183.7 155 60.0
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.8e-39 167.9 262 43.1
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.4e-39 167.5 260 43.5
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 8.5e-37 159.1 124 65.3
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 1.5e-36 158.3 94 79.8
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 1.9e-36 157.9 231 40.3
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 4.0e-34 150.2 194 45.4
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 1.2e-30 138.7 85 74.1
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 6.1e-27 126.3 260 37.3
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 1.6e-22 111.7 62 80.6
TPR.G22107 Trifolium pratense HOM05D004439 ORTHO05D005670 3.5e-22 110.5 70 75.7
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 6.6e-21 106.3 106 53.8
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 8.0e-19 99.4 92 53.3
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 1.9e-15 88.2 66 62.1
Actinidia27323 Actinidia chinensis HOM05D004439 ORTHO05D005670 4.3e-12 77.0 79 54.4
Actinidia22721 Actinidia chinensis HOM05D004439 ORTHO05D057326 2.6e-09 67.8 66 59.1
Actinidia27324 Actinidia chinensis HOM05D004439 ORTHO05D005670 1.9e-07 61.6 36 77.8
Actinidia27321 Actinidia chinensis HOM05D004439 ORTHO05D005670 2.7e-06 57.8 63 47.6


User provided reference genes

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