Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G4374 Fragaria x ananassa HOM05D005827 ORTHO05D005864 3.4e-73 278.5 166 100.0
FAN13G0291 Fragaria x ananassa HOM05D005827 ORTHO05D005864 1.9e-71 272.7 166 98.2
FAN08G1793 Fragaria x ananassa HOM05D005827 ORTHO05D005864 4.1e-71 271.6 166 98.2
FvH4_5g29540 Fragaria vesca HOM05D005827 ORTHO05D005864 1.2e-70 270.0 166 97.0
RcHm_v2.0_Chr7g0222441 Rosa chinensis HOM05D005827 ORTHO05D005864 5.6e-68 261.2 167 94.6
FAN04G0262 Fragaria x ananassa HOM05D005827 ORTHO05D005864 9.2e-63 243.8 131 95.4
CANSAT11G0172 Cannabis sativa HOM05D005827 ORTHO05D005864 1.2e-46 190.3 129 76.0
Prupe.1G568500 Prunus persica HOM05D005827 ORTHO05D005864 1.0e-45 187.2 166 65.7
Duzib132G0170 Durio zibethinus HOM05D005827 ORTHO05D005864 3.0e-45 185.7 167 62.9
MD15G1423200 Malus domestica HOM05D005827 ORTHO05D005864 6.6e-45 184.5 131 73.3
Gorai.005G235500 Gossypium raimondii HOM05D005827 ORTHO05D005864 1.6e-43 179.9 129 72.1
Manes.10G074300 Manihot esculenta HOM05D005827 ORTHO05D005864 6.2e-43 177.9 168 63.7
Atru.chr5.2579 Acer truncatum HOM05D005827 ORTHO05D005864 1.1e-42 177.2 167 62.3
Thecc.02G106700 Theobroma cacao HOM05D005827 ORTHO05D005864 1.1e-42 177.2 130 70.0
Dinv15756 Davidia involucrata HOM05D005827 ORTHO05D005864 3.1e-42 175.6 166 59.6
Potri.009G097000 Populus trichocarpa HOM05D005827 ORTHO05D005864 3.1e-42 175.6 167 61.7
COL.COLO4_32605 Corchorus olitorius HOM05D005827 ORTHO05D005864 5.3e-42 174.9 171 66.7
Gohir.A03G186800 Gossypium hirsutum HOM05D005827 ORTHO05D005864 5.3e-42 174.9 129 69.8
Eucgr.G01363 Eucalyptus grandis HOM05D005827 ORTHO05D005864 2.6e-41 172.6 166 59.0
Gohir.D02G207600 Gossypium hirsutum HOM05D005827 ORTHO05D005864 3.4e-41 172.2 129 70.5
Nitab4.5_0000209g0220 Nicotiana tabacum HOM05D005827 ORTHO05D005864 3.4e-41 172.2 167 56.9
QL11p034047 Quercus lobata HOM05D005827 ORTHO05D005864 4.9e-40 168.3 167 65.9
DCAR_029081 Daucus carota HOM05D005827 ORTHO05D005864 1.1e-39 167.2 170 61.2
Hma1.2p1_0796F.1_g219120 Hydrangea macrophylla HOM05D005827 ORTHO05D005864 1.4e-39 166.8 130 66.9
Sopen12g028550 Solanum pennellii HOM05D005827 ORTHO05D005864 1.9e-39 166.4 129 63.6
Peaxi162Scf00880g00322 Petunia axillaris HOM05D005827 ORTHO05D005864 3.2e-39 165.6 166 56.6
CSS0006486 Camellia sinensis var. sinensis HOM05D005827 ORTHO05D005864 4.2e-39 165.2 127 66.9
Solyc12g056030.2 Solanum lycopersicum HOM05D005827 ORTHO05D005864 7.1e-39 164.5 129 62.8
PGSC0003DMG400005012 Solanum tuberosum HOM05D005827 ORTHO05D005864 1.6e-38 163.3 129 62.0
CAN.G517.16 Capsicum annuum HOM05D005827 ORTHO05D005864 2.1e-38 162.9 121 66.1
Nitab4.5_0011210g0030 Nicotiana tabacum HOM05D000771 ORTHO05D005864 7.9e-38 161.0 166 53.0
QL11p033993 Quercus lobata HOM05D005827 ORTHO05D005864 7.9e-38 161.0 161 65.8
Rhsim11G0160600 Rhododendron simsii HOM05D005827 ORTHO05D005864 1.0e-37 160.6 164 57.3
CiPaw.06G170100 Carya illinoinensis HOM05D005827 ORTHO05D005864 1.3e-37 160.2 163 57.1
THA.LOC104823732 Tarenaya hassleriana HOM05D005827 ORTHO05D005864 1.8e-37 159.8 168 55.4
vmacro14445 Vaccinium macrocarpon HOM05D005827 ORTHO05D005864 2.3e-37 159.5 129 63.6
PGR042G1992 Punica granatum HOM05D005827 ORTHO05D005864 6.7e-37 157.9 167 62.9
Nitab4.5_0001647g0080 Nicotiana tabacum HOM05D005827 ORTHO05D005864 2.5e-36 156.0 129 59.7
Sabra09G0074600 Salix brachista HOM05D005827 ORTHO05D005864 9.6e-36 154.1 166 56.6
Cc02_g19170 Coffea canephora HOM05D005827 ORTHO05D005864 1.6e-35 153.3 130 62.3
Sabra09G0074500 Salix brachista HOM05D005827 ORTHO05D005864 2.1e-35 152.9 196 49.5
Lsat_1_v5_gn_5_114720 Lactuca sativa HOM05D005827 ORTHO05D005864 2.8e-35 152.5 128 64.8
Nn1g04717 Nelumbo nucifera HOM05D005827 ORTHO05D005864 3.7e-35 152.1 125 65.6
TAR625G0497 Trochodendron aralioides HOM05D005827 ORTHO05D005864 4.8e-35 151.8 130 63.1
TAR625G1254 Trochodendron aralioides HOM05D005827 ORTHO05D005864 4.8e-35 151.8 130 63.1
GSVIVG01003168001 Vitis vinifera HOM05D005827 ORTHO05D005864 4.8e-35 151.8 167 58.1
ECA234G2840 Erigeron canadensis HOM05D005827 ORTHO05D005864 1.1e-34 150.6 131 61.1
Cpa.g.sc246.10 Carica papaya HOM05D005827 ORTHO05D005864 1.8e-34 149.8 129 62.8
HanXRQChr16g0514881 Helianthus annuus HOM05D005827 ORTHO05D005864 2.4e-34 149.4 128 60.9
Sc08g0001470 Simmondsia chinensis HOM05D005827 ORTHO05D005864 5.3e-34 148.3 133 60.9
Haze_10160 Corylus avellana HOM05D005827 ORTHO05D005864 6.9e-34 147.9 119 64.7
EL10Ac9g22299 Beta vulgaris HOM05D005827 ORTHO05D005864 2.6e-33 146.0 167 53.3
Carub.0005s0059 Capsella rubella HOM05D005827 ORTHO05D005864 3.4e-33 145.6 132 58.3
CsaV3_4G029930 Cucumis sativus L. HOM05D005827 ORTHO05D005864 5.8e-33 144.8 131 56.5
AL5G10740 Arabidopsis lyrata HOM05D005827 ORTHO05D005864 1.7e-32 143.3 127 58.3
BcaB07g30381 Brassica carinata HOM05D005827 ORTHO05D005864 1.7e-32 143.3 132 56.8
A02p32240 Brassica napus HOM05D005827 ORTHO05D005864 1.7e-32 143.3 132 56.8
BolC2t11063H Brassica oleracea HOM05D005827 ORTHO05D005864 1.7e-32 143.3 132 56.8
BraA02t08240Z Brassica rapa HOM05D005827 ORTHO05D005864 1.7e-32 143.3 132 56.8
AT2G01640 Arabidopsis thaliana HOM05D005827 ORTHO05D005864 2.2e-32 142.9 132 57.6
BcaC03g17064 Brassica carinata HOM05D005827 ORTHO05D005864 2.2e-32 142.9 132 56.8
AUR62010278 Chenopodium quinoa HOM05D005827 ORTHO05D005864 2.9e-32 142.5 130 56.9
MD08G1229200 Malus domestica HOM05D005827 ORTHO05D005864 2.9e-32 142.5 140 60.7
MSTRG.27741 Avicennia marina HOM05D005827 ORTHO05D005864 3.8e-32 142.1 165 50.9
C02p49840 Brassica napus HOM05D005827 ORTHO05D005864 8.4e-32 141.0 132 56.1
Sp2g13090 Schrenkiella parvula HOM05D005827 ORTHO05D005864 8.4e-32 141.0 132 54.5
Lj9A321T79 Lonicera japonica HOM05D005827 ORTHO05D005864 9.3e-31 137.5 206 43.7
ClCG04G002790 Citrullus lanatus HOM05D005827 ORTHO05D005864 1.2e-30 137.1 159 49.1
Migut.N01172 Erythranthe guttata HOM05D005827 ORTHO05D005864 1.6e-30 136.7 129 58.1
PSO170G4182 Papaver somniferum HOM05D005827 ORTHO05D005864 2.7e-30 136.0 165 49.7
Sed0003004 Sechium edule HOM05D005827 ORTHO05D005864 4.6e-30 135.2 168 49.4
Aqoxy5G03364 Aquilegia oxysepala HOM05D005827 ORTHO05D005864 1.3e-29 133.7 163 49.7
TWI31G0230 Tripterygium wilfordii HOM05D005827 ORTHO05D005864 1.3e-29 133.7 128 59.4
Eucgr.H03226 Eucalyptus grandis HOM05D005827 ORTHO05D005864 5.1e-29 131.7 106 66.0
Lalb_Chr21g0308391 Lupinus albus HOM05D005827 ORTHO05D005864 8.7e-29 131.0 169 46.7
Ca_06388_v3 Cicer arietinum L. HOM05D005827 ORTHO05D005864 7.4e-28 127.9 135 55.6
PSO210G1068 Papaver somniferum HOM05D005827 ORTHO05D005864 7.4e-28 127.9 165 49.1
SalBow3G3341 Salvia bowleyana HOM05D005827 ORTHO05D005864 1.6e-27 126.7 138 50.0
Ca_30413_v3 Cicer arietinum L. HOM05D005827 ORTHO05D005864 2.1e-27 126.3 170 47.6
arahy.Tifrunner.gnm1.ann1.M92LVR Arachis hypogaea HOM05D005827 ORTHO05D005864 1.8e-26 123.2 124 52.4
Aa31LG2G8260 Aethionema arabicum HOM05D005827 ORTHO05D005864 3.1e-26 122.5 128 51.6
Thhalv10005665m.g Eutrema salsugineum HOM05D005827 ORTHO05D005864 6.9e-26 121.3 154 46.1
arahy.Tifrunner.gnm1.ann1.HL4A43 Arachis hypogaea HOM05D005827 ORTHO05D005864 9.0e-26 120.9 124 50.8
HPP92_026144 Vanilla planifolia HOM05D005827 ORTHO05D005864 1.5e-25 120.2 130 50.0
CDE01G0172 Ceratophyllum demersum HOM05D005827 ORTHO05D005864 4.5e-25 118.6 135 53.3
Actinidia00415 Actinidia chinensis HOM05D005827 ORTHO05D005864 2.2e-24 116.3 100 62.0
TAR381G1673 Trochodendron aralioides HOM05D005827 ORTHO05D005864 2.9e-24 115.9 105 62.9
Hund00127 Selenicereus undatus HOM05D005827 ORTHO05D005864 3.8e-24 115.5 100 62.0
Os12g0244500 Oryza sativa ssp. japonica HOM05D005827 ORTHO05D005864 6.5e-24 114.8 112 57.1
SGA_v2.0_scaffold42G16001 Striga asiatica HOM05D005827 ORTHO05D005864 6.5e-24 114.8 168 45.2
Ciclev10030223m.g Citrus clementina HOM05D005827 ORTHO05D005864 1.1e-23 114.0 124 57.3
Glyma.12G113700 Glycine max HOM05D005827 ORTHO05D005864 3.2e-23 112.5 164 42.1
Zm00001eb133530 Zea mays HOM05D005827 ORTHO05D005864 5.5e-23 111.7 163 44.8
Hund00128 Selenicereus undatus HOM05D005827 ORTHO05D005864 7.1e-23 111.3 101 60.4
MELO3C003274.2 Cucumis melo HOM05D005827 ORTHO05D005864 2.1e-22 109.8 140 45.7
Phvul.007G038800 Phaseolus vulgaris HOM05D005827 ORTHO05D005864 2.1e-22 109.8 132 49.2
Glyma.20G127400 Glycine max HOM05D005827 ORTHO05D005864 1.1e-20 104.0 127 46.5
SGA_v2.0_scaffold393G50707 Striga asiatica HOM05D005827 ORTHO05D005864 1.5e-20 103.6 162 42.0
Psat6g219720 Pisum sativum HOM05D005827 ORTHO05D005864 1.6e-19 100.1 144 44.4
Nn2g12688 Nelumbo nucifera HOM05D005827 ORTHO05D005864 2.2e-19 99.8 91 59.3
ATR0827G109 Amborella trichopoda HOM05D005827 ORTHO05D005864 2.8e-19 99.4 103 51.5
unitig_94.g28296 Utricularia gibba HOM05D005827 ORTHO05D005864 5.3e-18 95.1 131 43.5
unitig_94.g28309 Utricularia gibba HOM05D005827 ORTHO05D005864 5.3e-18 95.1 131 43.5
QL11p034007 Quercus lobata HOM05D005827 ORTHO05D005864 2.0e-17 93.2 109 61.5
MELO3C033554.2 Cucumis melo HOM05D005827 ORTHO05D005864 7.7e-17 91.3 131 42.0
Lj5g0000760 Lotus japonicus HOM05D005827 ORTHO05D005864 1.0e-16 90.9 115 47.0
AUR62044681 Chenopodium quinoa HOM05D005827 ORTHO05D005864 5.0e-16 88.6 76 56.6
AUR62039111 Chenopodium quinoa HOM05D005827 ORTHO05D005864 6.5e-16 88.2 74 58.1
Aa31sc215G30 Aethionema arabicum HOM05D005827 ORTHO05D005864 8.5e-16 87.8 92 52.2
CiPaw.07G088900 Carya illinoinensis HOM05D005827 ORTHO05D005864 1.9e-15 86.7 82 59.8
Lj3g0023632 Lotus japonicus HOM05D005827 ORTHO05D005864 4.2e-15 85.5 115 43.5
MD05G1087800 Malus domestica HOM05D005827 ORTHO05D005864 4.6e-14 82.0 95 47.4
ATR0691G195 Amborella trichopoda HOM05D005827 ORTHO05D005864 6.1e-14 81.6 80 51.2
Medtr1g107495 Medicago truncatula HOM05D005827 ORTHO05D005864 6.1e-14 81.6 84 51.2
CANSAT25G3357 Cannabis sativa HOM05D005827 ORTHO05D005864 1.5e-12 77.0 52 69.2
SMO364G0308 Selaginella moellendorffii HOM05D005827 ORTHO05D000003 1.5e-12 77.0 125 36.0
Zm00001eb207600 Zea mays HOM05D005827 ORTHO05D005864 3.3e-12 75.9 83 57.8
TPR.G13876 Trifolium pratense HOM05D005827 ORTHO05D005864 4.3e-12 75.5 76 52.6
SEGI_38856 Sequoiadendron giganteum HOM05D005827 ORTHO05D005864 7.4e-12 74.7 106 39.6
Zm00001eb006370 Zea mays HOM05D005827 ORTHO05D005864 9.7e-12 74.3 85 55.3
Zm00001eb350190 Zea mays HOM05D005827 ORTHO05D005864 1.3e-11 73.9 84 53.6
SMO364G0554 Selaginella moellendorffii HOM05D005827 ORTHO05D005864 1.7e-11 73.6 125 35.2
Zm00001eb324360 Zea mays HOM05D005827 ORTHO05D005864 2.2e-11 73.2 78 59.0
Zm00001eb259520 Zea mays HOM05D005827 ORTHO05D005864 1.1e-10 70.9 83 55.4
Zm00001eb324920 Zea mays HOM05D005827 ORTHO05D005864 4.1e-10 68.9 82 56.1
Mapoly0052s0016 Marchantia polymorpha HOM05D005827 ORTHO05D005864 5.3e-10 68.6 112 43.8
Zm00001eb091410 Zea mays HOM05D005827 ORTHO05D005864 1.2e-09 67.4 91 50.5
Ah.01g018070 Amaranthus hybridus HOM05D007150 ORTHO05D008994 2.9e-08 62.8 41 68.3
ClCG01G025500 Citrullus lanatus HOM05D005827 ORTHO05D005864 1.2e-06 57.4 123 33.3
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 7.9e-06 54.7 120 33.3


User provided reference genes

Program Settings