Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G4370 Fragaria x ananassa HOM05D006475 ORTHO05D007969 3.1e-60 235.7 203 100.0
FvH4_5g24000 Fragaria vesca HOM05D006475 ORTHO05D007969 2.1e-56 223.0 198 99.0
FAN18G1960 Fragaria x ananassa HOM05D006475 ORTHO05D007969 6.0e-56 221.5 198 98.5
FAN13G3229 Fragaria x ananassa HOM05D006475 ORTHO05D007969 3.6e-53 212.2 198 96.5
FAN08G1612 Fragaria x ananassa HOM05D006475 ORTHO05D007969 2.6e-51 206.1 198 94.4
FAN04G1597 Fragaria x ananassa HOM05D006475 ORTHO05D007969 1.3e-50 203.8 198 94.9
RcHm_v2.0_Chr7g0213461 Rosa chinensis HOM05D006475 ORTHO05D007969 6.0e-48 194.9 199 92.5
Prupe.5G019900 Prunus persica HOM05D006475 ORTHO05D007969 2.2e-34 149.8 201 83.1
Cfa012603 Carpinus fangiana HOM05D006475 ORTHO05D007969 7.4e-22 108.2 202 72.8
Haze_08048 Corylus avellana HOM05D006475 ORTHO05D007969 8.2e-21 104.8 202 71.8
CiPaw.12G072000 Carya illinoinensis HOM05D006475 ORTHO05D007969 1.1e-20 104.4 203 70.9
Haze_08058 Corylus avellana HOM05D006475 ORTHO05D007969 1.4e-20 104.0 202 71.3
Potri.003G103400 Populus trichocarpa HOM05D006475 ORTHO05D007969 6.9e-20 101.7 195 71.3
QL08p050707 Quercus lobata HOM05D006475 ORTHO05D007969 6.9e-20 101.7 200 70.0
Actinidia14740 Actinidia chinensis HOM05D006475 ORTHO05D007969 1.2e-19 100.9 209 67.0
TAR375G0514 Trochodendron aralioides HOM05D006475 ORTHO05D007969 2.6e-19 99.8 197 71.6
Lj8A334T74 Lonicera japonica HOM05D006475 ORTHO05D007969 7.7e-19 98.2 202 67.8
Manes.17G003100 Manihot esculenta HOM05D006475 ORTHO05D007969 7.7e-19 98.2 202 68.8
Rhsim07G0139200 Rhododendron simsii HOM05D006475 ORTHO05D007969 1.7e-18 97.1 210 66.2
Potri.001G130500 Populus trichocarpa HOM05D006475 ORTHO05D007969 2.2e-18 96.7 195 71.3
Thecc.01G139200 Theobroma cacao HOM05D006475 ORTHO05D007969 6.5e-18 95.1 200 69.0
Actinidia18163 Actinidia chinensis HOM05D006475 ORTHO05D007969 8.5e-18 94.7 205 66.8
Sabra03G0070600 Salix brachista HOM05D006475 ORTHO05D007969 1.4e-17 94.0 195 69.2
MSTRG.1769 Avicennia marina HOM05D006475 ORTHO05D007969 3.2e-17 92.8 200 70.0
TWI23G0232 Tripterygium wilfordii HOM05D006475 ORTHO05D007969 5.5e-17 92.0 201 66.2
SalBow8G0939 Salvia bowleyana HOM05D006475 ORTHO05D007969 3.6e-16 89.4 197 69.5
Nitab4.5_0006541g0010 Nicotiana tabacum HOM05D006475 ORTHO05D007969 1.0e-15 87.8 203 68.0
Sopen08g001530 Solanum pennellii HOM05D006475 ORTHO05D007969 1.4e-15 87.4 200 67.5
Oeu042209.2 Olea europaea HOM05D006475 ORTHO05D007969 1.1e-14 84.3 197 68.0
Nitab4.5_0001175g0100 Nicotiana tabacum HOM05D006475 ORTHO05D007969 2.5e-14 83.2 204 67.2
vmacro17427 Vaccinium macrocarpon HOM05D006475 ORTHO05D007969 7.4e-14 81.6 227 59.5
Hund11101 Selenicereus undatus HOM05D006475 ORTHO05D007969 9.7e-14 81.3 200 64.5
Duzib187G1769 Durio zibethinus HOM05D006475 ORTHO05D007969 1.3e-13 80.9 199 65.3
CSS0010448 Camellia sinensis var. sinensis HOM05D006475 ORTHO05D007969 1.7e-13 80.5 205 64.9
Peaxi162Scf00045g00636 Petunia axillaris HOM05D006475 ORTHO05D007969 1.7e-13 80.5 201 66.7
Nn3g19252 Nelumbo nucifera HOM05D006475 ORTHO05D007969 2.8e-13 79.7 196 66.3
Cc08_g05010 Coffea canephora HOM05D006475 ORTHO05D007969 1.4e-12 77.4 203 49.8
Glyma.01G149900 Glycine max HOM05D006475 ORTHO05D007969 1.4e-12 77.4 198 65.7
PGSC0003DMG400018460 Solanum tuberosum HOM05D006475 ORTHO05D007969 1.4e-12 77.4 204 65.2
Cpa.g.sc137.18 Carica papaya HOM05D006475 ORTHO05D007969 1.8e-12 77.0 200 64.0
Lalb_Chr05g0215421 Lupinus albus HOM05D006475 ORTHO05D007969 2.4e-12 76.6 214 64.0
Nitab4.5_0001175g0110 Nicotiana tabacum HOM05D006475 ORTHO05D007969 2.4e-12 76.6 208 33.2
Ciclev10005760m.g Citrus clementina HOM05D006475 ORTHO05D007969 3.1e-12 76.3 201 66.7
Solyc08g005520.3 Solanum lycopersicum HOM05D006475 ORTHO05D007969 4.1e-12 75.9 200 65.5
PGR031G1524 Punica granatum HOM05D006475 ORTHO05D007969 5.3e-12 75.5 202 64.4
CAN.G320.16 Capsicum annuum HOM05D006475 ORTHO05D007969 6.9e-12 75.1 203 66.0
DCAR_028235 Daucus carota HOM05D006475 ORTHO05D007969 6.9e-12 75.1 203 64.5
Lsat_1_v5_gn_6_15221 Lactuca sativa HOM05D006475 ORTHO05D007969 1.2e-11 74.3 204 66.2
Ah.12g056010 Amaranthus hybridus HOM05D006475 ORTHO05D007969 7.7e-11 71.6 203 65.0
Nitab4.5_0001175g0040 Nicotiana tabacum HOM05D006475 ORTHO05D007969 7.7e-11 71.6 198 50.5
Phvul.002G128300 Phaseolus vulgaris HOM05D006475 ORTHO05D007969 1.0e-10 71.2 205 61.5
VMungo1215G2540 Vigna mungo HOM05D006475 ORTHO05D007969 1.0e-10 71.2 197 65.0
PSO717G0136 Papaver somniferum HOM05D006475 ORTHO05D007969 1.3e-10 70.9 226 59.3
Ca_25099_v3 Cicer arietinum L. HOM05D006475 ORTHO05D007969 1.7e-10 70.5 203 62.1
AL7G34940 Arabidopsis lyrata HOM05D006475 ORTHO05D007969 2.2e-10 70.1 197 63.5
A01p11110 Brassica napus HOM05D006475 ORTHO05D007969 2.9e-10 69.7 198 62.6
BraA01t01057Z Brassica rapa HOM05D006475 ORTHO05D007969 2.9e-10 69.7 198 62.6
AUR62027319 Chenopodium quinoa HOM05D006475 ORTHO05D007969 2.9e-10 69.7 203 62.1
AUR62007413 Chenopodium quinoa HOM05D006475 ORTHO05D007969 6.5e-10 68.6 201 62.2
ECA233G2922 Erigeron canadensis HOM05D006475 ORTHO05D007969 6.5e-10 68.6 205 49.8
BcaC09g51436 Brassica carinata HOM05D006475 ORTHO05D007969 1.4e-09 67.4 198 62.6
BolC1t01287H Brassica oleracea HOM05D006475 ORTHO05D007969 1.4e-09 67.4 198 62.6
Thhalv10026017m.g Eutrema salsugineum HOM05D006475 ORTHO05D007969 1.4e-09 67.4 199 61.8
Hma1.2p1_0544F.1_g175570 Hydrangea macrophylla HOM05D006475 ORTHO05D007969 1.4e-09 67.4 203 60.6
Aa31LG6G1840 Aethionema arabicum HOM05D006475 ORTHO05D007969 1.9e-09 67.0 197 61.4
CANSAT21G0913 Cannabis sativa HOM05D006475 ORTHO05D007969 1.9e-09 67.0 172 69.2
CARHR226020 Cardamine hirsuta HOM05D006475 ORTHO05D007969 1.9e-09 67.0 203 61.6
Eucgr.D02591 Eucalyptus grandis HOM05D006475 ORTHO05D007969 1.9e-09 67.0 199 63.3
PSO675G8107 Papaver somniferum HOM05D006475 ORTHO05D007969 1.9e-09 67.0 237 55.3
Aqoxy7G00886 Aquilegia oxysepala HOM05D006475 ORTHO05D007969 3.2e-09 66.2 220 59.5
Dinv28011 Davidia involucrata HOM05D006475 ORTHO05D007969 3.2e-09 66.2 97 50.5
Glyma.09G214000 Glycine max HOM05D006475 ORTHO05D007969 3.2e-09 66.2 196 63.3
GSVIVG01022797001 Vitis vinifera HOM05D006475 ORTHO05D007969 3.2e-09 66.2 129 86.0
Carub.0007s2200 Capsella rubella HOM05D006475 ORTHO05D007969 5.5e-09 65.5 197 62.9
HanXRQChr08g0226771 Helianthus annuus HOM05D006475 ORTHO05D007969 7.2e-09 65.1 207 61.8
Gorai.012G037900 Gossypium raimondii HOM05D006475 ORTHO05D007969 9.4e-09 64.7 199 60.8
Zm00001eb025510 Zea mays HOM05D006475 ORTHO05D007969 9.4e-09 64.7 199 64.8
CDE11G0189 Ceratophyllum demersum HOM05D006475 ORTHO05D007969 1.6e-08 63.9 203 58.6
Sp7g17850 Schrenkiella parvula HOM05D006475 ORTHO05D007969 2.1e-08 63.5 198 62.6
Gohir.A05G381700 Gossypium hirsutum HOM05D006475 ORTHO05D007969 3.6e-08 62.8 199 60.8
Gohir.D04G033600 Gossypium hirsutum HOM05D006475 ORTHO05D007969 3.6e-08 62.8 199 60.3
unitig_0.g2207 Utricularia gibba HOM05D006475 ORTHO05D007969 7.9e-08 61.6 33 81.8
C01p13140 Brassica napus HOM05D006475 ORTHO05D007969 1.8e-07 60.5 33 81.8
arahy.Tifrunner.gnm1.ann1.X7UPX8 Arachis hypogaea HOM05D006475 ORTHO05D007969 2.3e-07 60.1 154 72.7
BcaNung04008 Brassica carinata HOM05D006475 ORTHO05D007969 2.3e-07 60.1 33 81.8
Medtr5g026800 Medicago truncatula HOM05D006475 ORTHO05D007969 2.3e-07 60.1 218 60.1
arahy.Tifrunner.gnm1.ann1.SLXS5Y Arachis hypogaea HOM05D006475 ORTHO05D007969 3.0e-07 59.7 136 79.4
Sc07g0008230 Simmondsia chinensis HOM05D006475 ORTHO05D007969 3.9e-07 59.3 195 57.9
SGA_v2.0_scaffold144G35881 Striga asiatica HOM05D006475 ORTHO05D007969 5.1e-07 58.9 195 63.6
arahy.Tifrunner.gnm1.ann1.0NMX6V Arachis hypogaea HOM05D006475 ORTHO05D007969 6.7e-07 58.5 214 57.5
arahy.Tifrunner.gnm1.ann1.CC5QNU Arachis hypogaea HOM05D006475 ORTHO05D007969 6.7e-07 58.5 214 57.5
Nitab4.5_0000532g0060 Nicotiana tabacum HOM05D006475 ORTHO05D007969 1.1e-06 57.8 33 72.7
arahy.Tifrunner.gnm1.ann1.Y3VSY6 Arachis hypogaea HOM05D006475 ORTHO05D007969 5.7e-06 55.5 147 53.1
TPR.G17268 Trifolium pratense HOM05D006475 ORTHO05D007969 5.7e-06 55.5 154 72.7


User provided reference genes

Program Settings