Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G4320 Fragaria x ananassa HOM05D006694 ORTHO05D008240 1.3e-89 335.1 168 100.0
FvH4_5g33200 Fragaria vesca HOM05D006694 ORTHO05D008240 7.2e-88 329.3 167 98.8
FAN08G0107 Fragaria x ananassa HOM05D006694 ORTHO05D008240 3.9e-86 323.6 168 95.8
RcHm_v2.0_Chr5g0048941 Rosa chinensis HOM05D006694 ORTHO05D008240 8.3e-68 262.7 168 79.2
FAN25G2919 Fragaria x ananassa HOM05D006694 ORTHO05D008240 3.1e-67 260.8 168 78.0
FvH4_3g35120 Fragaria vesca HOM05D006694 ORTHO05D008240 7.0e-67 259.6 168 76.8
FAN11G2736 Fragaria x ananassa HOM05D006694 ORTHO05D008240 1.2e-63 248.8 157 77.7
FAN21G3540 Fragaria x ananassa HOM05D006694 ORTHO05D008240 1.2e-63 248.8 168 75.0
MD08G1215500 Malus domestica HOM05D006694 ORTHO05D008240 8.9e-46 189.5 160 60.6
CiPaw.14G112300 Carya illinoinensis HOM05D006694 ORTHO05D008240 2.8e-39 167.9 159 53.5
QL01p017030 Quercus lobata HOM05D006694 ORTHO05D008240 1.9e-35 155.2 156 50.6
RcHm_v2.0_Chr7g0231581 Rosa chinensis HOM05D006694 ORTHO05D008240 3.0e-33 147.9 88 85.2
CSS0033907 Camellia sinensis var. sinensis HOM05D006694 ORTHO05D008240 1.2e-29 136.0 158 41.8
Haze_23236 Corylus avellana HOM05D006694 ORTHO05D008240 2.0e-29 135.2 151 48.3
TWI79G1258 Tripterygium wilfordii HOM05D006694 ORTHO05D008240 3.8e-28 131.0 161 42.9
Haze_23854 Corylus avellana HOM05D006694 ORTHO05D008240 7.1e-27 126.7 134 51.5
Lalb_Chr10g0096081 Lupinus albus HOM05D006694 ORTHO05D008240 2.1e-26 125.2 157 43.3
Sc16g0011010 Simmondsia chinensis HOM05D006694 ORTHO05D008240 4.6e-26 124.0 168 42.3
ClCG03G012530 Citrullus lanatus HOM05D006694 ORTHO05D008240 2.3e-25 121.7 167 41.3
Hma1.2p1_1099F.1_g256830 Hydrangea macrophylla HOM05D006694 ORTHO05D008240 2.3e-25 121.7 152 43.4
Cfa011326 Carpinus fangiana HOM05D006694 ORTHO05D008240 3.0e-25 121.3 158 41.8
MELO3C015109.2 Cucumis melo HOM05D006694 ORTHO05D008240 1.3e-23 115.9 166 39.8
Prupe.1G547200 Prunus persica HOM05D006694 ORTHO05D008240 2.8e-23 114.8 83 68.7
CsaV3_1G043500 Cucumis sativus L. HOM05D006694 ORTHO05D008240 4.8e-23 114.0 164 39.6
Hund21974 Selenicereus undatus HOM05D006179 ORTHO05D008240 6.2e-23 113.6 145 43.4
Sed0016136 Sechium edule HOM05D006694 ORTHO05D008240 8.1e-23 113.2 158 39.9
LjContig00485g0019324 Lotus japonicus HOM05D006694 ORTHO05D008240 1.4e-22 112.5 158 41.1
PGR031G0070 Punica granatum HOM05D006694 ORTHO05D008240 1.8e-22 112.1 161 44.7
PGSC0003DMG400022317 Solanum tuberosum HOM05D006694 ORTHO05D008240 1.8e-22 112.1 152 40.1
Nitab4.5_0000730g0020 Nicotiana tabacum HOM05D006694 ORTHO05D008240 3.1e-22 111.3 144 38.2
Medtr7g067460 Medicago truncatula HOM05D006694 ORTHO05D008240 5.3e-22 110.5 129 43.4
Solyc07g064625.1 Solanum lycopersicum HOM05D006694 ORTHO05D008240 6.9e-22 110.2 153 39.9
Ca_20213_v3 Cicer arietinum L. HOM05D006694 ORTHO05D008240 1.5e-21 109.0 157 41.4
Nitab4.5_0001500g0030 Nicotiana tabacum HOM05D006694 ORTHO05D008240 1.5e-21 109.0 144 37.5
Sopen07g032820 Solanum pennellii HOM05D006694 ORTHO05D008240 2.6e-21 108.2 153 39.9
CAN.G337.135 Capsicum annuum HOM05D006694 ORTHO05D008240 5.8e-21 107.1 153 39.2
LjContig00485g0005104 Lotus japonicus HOM05D006694 ORTHO05D008240 1.3e-20 105.9 157 41.4
Ca_07624_v3 Cicer arietinum L. HOM05D000278 ORTHO05D008240 1.7e-20 105.5 153 41.2
HanXRQChr14g0447481 Helianthus annuus HOM05D006694 ORTHO05D008240 2.2e-20 105.1 160 35.6
MD15G1400000 Malus domestica HOM05D006694 ORTHO05D008240 2.2e-20 105.1 83 61.4
Psat3g130440 Pisum sativum HOM05D006694 ORTHO05D008240 2.9e-20 104.8 136 41.2
Oeu043278.1 Olea europaea HOM05D006694 ORTHO05D008240 6.4e-20 103.6 169 38.5
CARHR235710 Cardamine hirsuta HOM05D006694 ORTHO05D008240 8.4e-20 103.2 133 42.1
THA.LOC104800448 Tarenaya hassleriana HOM05D006694 ORTHO05D008240 1.1e-19 102.8 156 39.1
Phvul.008G105900 Phaseolus vulgaris HOM05D006694 ORTHO05D008240 1.4e-19 102.4 155 38.1
Aqoxy1G00470 Aquilegia oxysepala HOM05D006694 ORTHO05D008240 3.2e-19 101.3 145 33.8
TAR633G1767 Trochodendron aralioides HOM05D006694 ORTHO05D008240 3.2e-19 101.3 165 35.8
Nn7g35871 Nelumbo nucifera HOM05D006694 ORTHO05D008240 5.4e-19 100.5 162 36.4
Aa31LG10G10300 Aethionema arabicum HOM05D006694 ORTHO05D008240 2.1e-18 98.6 152 39.5
Glyma.07G147400 Glycine max HOM05D006694 ORTHO05D008240 2.7e-18 98.2 132 39.4
Thhalv10006947m.g Eutrema salsugineum HOM05D006694 ORTHO05D008240 3.5e-18 97.8 154 38.3
TPR.G8137 Trifolium pratense HOM05D006694 ORTHO05D008240 3.5e-18 97.8 125 40.8
Ah.06g194610 Amaranthus hybridus HOM05D006694 ORTHO05D008240 4.6e-18 97.4 109 43.1
Nitab4.5_0003488g0040 Nicotiana tabacum HOM05D006694 ORTHO05D008240 6.0e-18 97.1 145 36.6
Lj1g0001110 Lotus japonicus HOM05D006694 ORTHO05D010126 3.0e-17 94.7 159 40.9
AL7G24620 Arabidopsis lyrata HOM05D006694 ORTHO05D008240 5.1e-17 94.0 131 38.9
EL10Ac4g10114 Beta vulgaris HOM05D006694 ORTHO05D008240 5.1e-17 94.0 96 47.9
Cfa009864 Carpinus fangiana HOM05D006694 ORTHO05D008240 5.1e-17 94.0 154 37.0
AUR62006546 Chenopodium quinoa HOM05D006694 ORTHO05D008240 8.7e-17 93.2 162 35.2
SalBow5G3658 Salvia bowleyana HOM05D006694 ORTHO05D008240 8.7e-17 93.2 153 34.6
Aa31LG5G9000 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.5e-16 92.4 157 38.9
Aa31LG5G8930 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.9e-16 92.0 163 37.4
Migut.D00664 Erythranthe guttata HOM05D006694 ORTHO05D008240 1.9e-16 92.0 146 34.9
Sp1g10540 Schrenkiella parvula HOM05D006694 ORTHO05D008240 4.3e-16 90.9 119 43.7
SalBow5G5172 Salvia bowleyana HOM05D006694 ORTHO05D008240 5.6e-16 90.5 130 37.7
Aa31LG2G18100 Aethionema arabicum HOM05D006694 ORTHO05D008240 7.3e-16 90.1 156 36.5
Aa31LG8G12540 Aethionema arabicum HOM05D006694 ORTHO05D008240 7.3e-16 90.1 136 38.2
Aa31LG2G18070 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.3e-15 89.4 157 36.9
Aa31LG2G18090 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.3e-15 89.4 157 36.9
C05p11260 Brassica napus HOM05D006694 ORTHO05D008240 1.6e-15 89.0 144 37.5
SalBow6G6606 Salvia bowleyana HOM05D006694 ORTHO05D008240 1.6e-15 89.0 153 32.7
BolC5t29875H Brassica oleracea HOM05D006694 ORTHO05D008240 2.1e-15 88.6 144 36.8
Aa31LG6G11680 Aethionema arabicum HOM05D006694 ORTHO05D008240 3.6e-15 87.8 133 38.3
Aa31LG6G5340 Aethionema arabicum HOM05D006694 ORTHO05D008240 3.6e-15 87.8 133 38.3
Aa31sc233G30 Aethionema arabicum HOM05D006694 ORTHO05D008240 8.1e-15 86.7 156 35.3
Aa31LG6G11690 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.8e-14 85.5 136 38.2
Aa31LG6G5330 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.8e-14 85.5 136 38.2
VMungo1383G3557 Vigna mungo HOM05D006694 ORTHO05D008240 1.8e-14 85.5 147 32.7
Aa31sc233G40 Aethionema arabicum HOM05D006694 ORTHO05D008240 2.4e-14 85.1 156 36.5
Aa31sc233G60 Aethionema arabicum HOM05D006694 ORTHO05D008240 2.4e-14 85.1 156 36.5
A06p09550 Brassica napus HOM05D006694 ORTHO05D008240 2.4e-14 85.1 144 34.7
BraA06t24145Z Brassica rapa HOM05D006694 ORTHO05D008240 2.4e-14 85.1 144 35.4
SGA_v2.0_scaffold29G12231 Striga asiatica HOM05D006694 ORTHO05D008240 4.0e-14 84.3 147 33.3
Dinv15034 Davidia involucrata HOM05D006694 ORTHO05D008240 5.3e-14 84.0 58 67.2
MD15G1399800 Malus domestica HOM05D006694 ORTHO05D008240 5.3e-14 84.0 58 70.7
SalBow6G6418 Salvia bowleyana HOM05D006694 ORTHO05D008240 5.3e-14 84.0 130 35.4
Aa31sc233G50 Aethionema arabicum HOM05D006694 ORTHO05D008240 1.2e-13 82.8 160 34.4
MBI11_g34855_MAGBIO Magnolia biondii HOM05D000162 ORTHO05D000090 1.7e-12 79.0 121 35.5
MBI04_g37009_MAGBIO Magnolia biondii HOM05D006694 ORTHO05D008240 2.2e-12 78.6 132 31.8
AT4G28010 Arabidopsis thaliana HOM05D006694 ORTHO05D008240 3.8e-12 77.8 134 35.8
Atru.chr3.2947 Acer truncatum HOM05D006694 ORTHO05D008240 8.4e-12 76.6 100 46.0
Atru.chr3.2963 Acer truncatum HOM05D006694 ORTHO05D008240 8.4e-12 76.6 100 46.0
DCAR_024407 Daucus carota HOM05D006694 ORTHO05D008240 8.4e-12 76.6 83 45.8
Manes.09G016633 Manihot esculenta HOM05D000162 ORTHO05D000090 1.4e-11 75.9 131 34.4
Ciclev10014456m.g Citrus clementina HOM05D006694 ORTHO05D008240 7.1e-11 73.6 59 55.9
ATR0737G153 Amborella trichopoda HOM05D006694 ORTHO05D008240 9.3e-11 73.2 125 35.2
Manes.01G178400 Manihot esculenta HOM05D006694 ORTHO05D008240 2.1e-10 72.0 78 50.0
Nitab4.5_0000718g0300 Nicotiana tabacum HOM05D006694 ORTHO05D008240 2.7e-10 71.6 86 41.9
Carub.0007s1279 Capsella rubella HOM05D006694 ORTHO05D008240 3.5e-10 71.2 106 37.7
Potri.009G069600 Populus trichocarpa HOM05D006694 ORTHO05D008240 3.9e-09 67.8 79 46.8
Sabra09G0052500 Salix brachista HOM05D006694 ORTHO05D008240 5.1e-09 67.4 78 47.4
Rhsim13G0208900 Rhododendron simsii HOM05D006694 ORTHO05D008240 2.5e-08 65.1 51 51.0
ATR0681G086 Amborella trichopoda HOM05D006694 ORTHO05D008240 7.4e-08 63.5 133 30.8
VMungo1383G3689 Vigna mungo HOM05D000162 ORTHO05D000090 9.6e-08 63.2 147 26.5
ATR0737G136 Amborella trichopoda HOM05D006694 ORTHO05D008240 2.1e-07 62.0 103 31.1
Eucgr.G03208 Eucalyptus grandis HOM05D006694 ORTHO05D008240 2.1e-07 62.0 82 43.9
Sc05g0000860 Simmondsia chinensis HOM05D000162 ORTHO05D000090 2.1e-07 62.0 156 28.2
THA.LOC104809083 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 2.8e-07 61.6 152 27.6
MSTRG.18464 Avicennia marina HOM05D006694 ORTHO05D008240 3.7e-07 61.2 150 28.7
Nn3g18307 Nelumbo nucifera HOM05D000162 ORTHO05D000090 8.1e-07 60.1 115 26.1
Phvul.008G069700 Phaseolus vulgaris HOM05D000162 ORTHO05D000090 8.1e-07 60.1 142 27.5
BolC8t52279H Brassica oleracea HOM05D000162 ORTHO05D000090 1.4e-06 59.3 140 30.0
EL10Ac5g10449 Beta vulgaris HOM05D000162 ORTHO05D000090 1.8e-06 58.9 118 28.8
THA.LOC104809084 Tarenaya hassleriana HOM05D000162 ORTHO05D000090 2.4e-06 58.5 134 24.6
GSVIVG01037290001 Vitis vinifera HOM05D006694 ORTHO05D008240 2.4e-06 58.5 46 56.5
Aa31LG5G21690 Aethionema arabicum HOM05D006694 ORTHO05D008240 3.1e-06 58.2 136 30.9
Nn1g02624 Nelumbo nucifera HOM05D000162 ORTHO05D000090 3.1e-06 58.2 140 27.1
TWI75G1134 Tripterygium wilfordii HOM05D000162 ORTHO05D000090 3.1e-06 58.2 128 29.7
TAR362G0483 Trochodendron aralioides HOM05D000162 ORTHO05D000090 4.0e-06 57.8 102 33.3
ECA238G0309 Erigeron canadensis HOM05D006295 ORTHO05D008061 5.3e-06 57.4 78 35.9
Lsat_1_v5_gn_9_9621 Lactuca sativa HOM05D000162 ORTHO05D000090 5.3e-06 57.4 138 25.4
ATR1128G092 Amborella trichopoda HOM05D006694 ORTHO05D008240 6.9e-06 57.0 99 31.3
AUR62011921 Chenopodium quinoa HOM05D000162 ORTHO05D000090 6.9e-06 57.0 148 26.4


User provided reference genes

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