Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G4268 Fragaria x ananassa HOM05D005023 ORTHO05D006009 4.5e-183 644.4 320 100.0
FvH4_5g22760 Fragaria vesca HOM05D005023 ORTHO05D006009 5.0e-182 641.0 320 99.7
FAN18G3597 Fragaria x ananassa HOM05D005023 ORTHO05D006009 5.0e-182 641.0 320 99.7
FAN08G0704 Fragaria x ananassa HOM05D005023 ORTHO05D006009 2.9e-174 615.1 320 95.9
FAN13G2198 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.1e-173 613.2 320 95.6
FAN13G2978 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.1e-173 613.2 320 95.6
RcHm_v2.0_Chr7g0211361 Rosa chinensis HOM05D005023 ORTHO05D006009 5.2e-155 551.2 320 87.2
FAN04G1126 Fragaria x ananassa HOM05D005023 ORTHO05D006009 4.0e-147 525.0 268 95.9
Prupe.5G030700 Prunus persica HOM05D005023 ORTHO05D006009 5.2e-131 471.5 319 73.7
MD06G1038100 Malus domestica HOM05D005023 ORTHO05D006009 2.1e-111 406.4 317 65.6
QL12p004398 Quercus lobata HOM05D005023 ORTHO05D006009 9.6e-101 370.9 317 59.0
Cfa012488 Carpinus fangiana HOM05D005023 ORTHO05D006009 1.8e-94 350.1 307 57.3
CiPaw.11G096900 Carya illinoinensis HOM05D005023 ORTHO05D006009 4.8e-92 342.0 304 57.9
TWI60G0688 Tripterygium wilfordii HOM05D005023 ORTHO05D006009 7.2e-88 328.2 310 53.9
Atru.chr12.846 Acer truncatum HOM05D005023 ORTHO05D006009 6.3e-84 315.1 308 54.5
GSVIVG01013101001 Vitis vinifera HOM05D005023 ORTHO05D006009 6.3e-84 315.1 316 52.2
Dinv28986 Davidia involucrata HOM05D005023 ORTHO05D006009 1.8e-83 313.5 300 51.0
CSS0008599 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 1.0e-81 307.8 300 51.0
Potri.003G095200 Populus trichocarpa HOM05D005023 ORTHO05D006009 1.3e-81 307.4 314 50.3
Manes.02G223400 Manihot esculenta HOM05D005023 ORTHO05D006009 2.2e-81 306.6 308 50.6
Thecc.03G307500 Theobroma cacao HOM05D005023 ORTHO05D006009 1.1e-80 304.3 313 52.4
Duzib084G0965 Durio zibethinus HOM05D005023 ORTHO05D006009 1.9e-80 303.5 301 51.8
Ciclev10016033m.g Citrus clementina HOM05D005023 ORTHO05D006009 1.6e-79 300.4 304 51.6
COL.COLO4_16967 Corchorus olitorius HOM05D005023 ORTHO05D006009 6.7e-78 295.0 270 53.7
Cpa.g.sc90.15 Carica papaya HOM05D005023 ORTHO05D006009 1.3e-76 290.8 277 53.1
Haze_08177 Corylus avellana HOM05D005023 ORTHO05D006009 1.1e-75 287.7 229 61.6
Gohir.A12G206900 Gossypium hirsutum HOM05D005023 ORTHO05D006009 1.1e-75 287.7 300 50.3
Gorai.008G224900 Gossypium raimondii HOM05D005023 ORTHO05D006009 1.4e-75 287.3 300 50.0
Actinidia09175 Actinidia chinensis HOM05D005023 ORTHO05D006009 4.1e-75 285.8 298 49.3
TPR.G14159 Trifolium pratense HOM05D005023 ORTHO05D006009 7.0e-75 285.0 305 49.5
Lalb_Chr25g0286701 Lupinus albus HOM05D005023 ORTHO05D006009 9.1e-75 284.6 311 48.6
Gohir.D12G209350 Gossypium hirsutum HOM05D005023 ORTHO05D006009 1.2e-74 284.3 300 49.7
Medtr8g066330 Medicago truncatula HOM05D005023 ORTHO05D006009 7.7e-74 281.6 318 47.8
Hma1.2p1_2161F.1_g315620 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 1.0e-73 281.2 304 48.7
CANSAT54G0648 Cannabis sativa HOM05D005023 ORTHO05D006009 1.7e-73 280.4 311 50.2
DCAR_031128 Daucus carota HOM05D005023 ORTHO05D006009 3.6e-71 272.7 265 50.9
Lj6g0028231 Lotus japonicus HOM05D005023 ORTHO05D006009 8.0e-71 271.6 318 47.2
Ca_22661_v3 Cicer arietinum L. HOM05D005023 ORTHO05D006009 1.0e-70 271.2 305 45.6
Actinidia25987 Actinidia chinensis HOM05D005023 ORTHO05D006009 1.8e-70 270.4 301 49.2
Psat4g122280 Pisum sativum HOM05D005023 ORTHO05D006009 8.8e-70 268.1 265 50.6
Aqoxy1G01584 Aquilegia oxysepala HOM05D005023 ORTHO05D006009 2.0e-69 266.9 277 47.3
Sabra01G0107600 Salix brachista HOM05D005023 ORTHO05D006009 1.7e-68 263.8 373 42.6
PSO782G3892 Papaver somniferum HOM05D005023 ORTHO05D006009 2.8e-68 263.1 267 48.7
Rhsim07G0130800 Rhododendron simsii HOM05D005023 ORTHO05D006009 3.7e-68 262.7 298 47.0
Psat4g122680 Pisum sativum HOM05D005023 ORTHO05D006009 4.8e-68 262.3 277 48.7
PGSC0003DMG400014810 Solanum tuberosum HOM05D005023 ORTHO05D006009 6.3e-68 261.9 255 51.8
vmacro00304 Vaccinium macrocarpon HOM05D005023 ORTHO05D006009 1.8e-67 260.4 239 53.6
Solyc08g076570.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 7.0e-67 258.5 255 51.0
Lj2A234G45 Lonicera japonica HOM05D005023 ORTHO05D006009 2.7e-66 256.5 327 41.6
CAN.G298.60 Capsicum annuum HOM05D005023 ORTHO05D006009 1.0e-65 254.6 255 50.2
CAN.G298.61 Capsicum annuum HOM05D005023 ORTHO05D006009 1.0e-65 254.6 255 50.2
CAN.G726.32 Capsicum annuum HOM05D005023 ORTHO05D006009 1.0e-65 254.6 255 50.2
Nitab4.5_0002380g0110 Nicotiana tabacum HOM05D005023 ORTHO05D006009 1.3e-65 254.2 304 46.1
Sopen08g025130 Solanum pennellii HOM05D005023 ORTHO05D006009 1.3e-65 254.2 252 51.2
Peaxi162Scf00170g00918 Petunia axillaris HOM05D005023 ORTHO05D006009 2.9e-65 253.1 257 50.6
PSO170G6706 Papaver somniferum HOM05D005023 ORTHO05D006009 6.5e-65 251.9 279 47.3
Sed0002054 Sechium edule HOM05D005023 ORTHO05D006009 8.5e-65 251.5 306 43.1
arahy.Tifrunner.gnm1.ann1.6CH5L4 Arachis hypogaea HOM05D005023 ORTHO05D006009 1.1e-64 251.1 323 43.0
PSO302G0152 Papaver somniferum HOM05D005023 ORTHO05D006009 1.1e-64 251.1 306 45.1
arahy.Tifrunner.gnm1.ann1.NK2KWA Arachis hypogaea HOM05D005023 ORTHO05D006009 1.5e-64 250.8 323 43.0
ECA240G3323 Erigeron canadensis HOM05D005023 ORTHO05D006009 1.9e-64 250.4 308 44.5
Phvul.009G009200 Phaseolus vulgaris HOM05D005023 ORTHO05D006009 1.9e-64 250.4 254 49.6
Sabra03G0064200 Salix brachista HOM05D005023 ORTHO05D006009 1.9e-64 250.4 342 43.6
arahy.Tifrunner.gnm1.ann1.J93PEP Arachis hypogaea HOM05D005023 ORTHO05D006009 4.2e-64 249.2 323 42.7
Migut.E00780 Erythranthe guttata HOM05D005023 ORTHO05D006009 4.2e-64 249.2 253 48.6
Lsat_1_v5_gn_6_80180 Lactuca sativa HOM05D005023 ORTHO05D006009 4.2e-64 249.2 271 45.8
Nitab4.5_0000353g0050 Nicotiana tabacum HOM05D005023 ORTHO05D006009 4.2e-64 249.2 255 50.2
ClCG04G001320 Citrullus lanatus HOM05D005023 ORTHO05D006009 2.1e-63 246.9 301 42.5
PGR042G2438 Punica granatum HOM05D005023 ORTHO05D006009 2.1e-63 246.9 256 46.9
Glyma.06G013600 Glycine max HOM05D005023 ORTHO05D006009 3.6e-63 246.1 277 49.1
MBI02_g28332_MAGBIO Magnolia biondii HOM05D005023 ORTHO05D006009 8.0e-63 245.0 298 46.6
Nitab4.5_0004669g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 1.4e-62 244.2 255 48.6
Nn7g38116 Nelumbo nucifera HOM05D005023 ORTHO05D006009 1.8e-62 243.8 299 44.1
Glyma.04G013700 Glycine max HOM05D005023 ORTHO05D006009 4.0e-62 242.7 267 48.7
Eucgr.E00250 Eucalyptus grandis HOM05D005023 ORTHO05D006009 8.8e-62 241.5 310 43.9
Nitab4.5_0004839g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 1.5e-61 240.7 248 49.2
CsaV3_1G033210 Cucumis sativus L. HOM05D000021 ORTHO05D000010 1.7e-60 237.3 268 43.3
Hund11209 Selenicereus undatus HOM05D005023 ORTHO05D006009 3.7e-60 236.1 292 45.5
Cc08_g03230 Coffea canephora HOM05D005023 ORTHO05D006009 2.4e-59 233.4 260 48.5
HanXRQChr03g0083581 Helianthus annuus HOM05D005023 ORTHO05D006009 2.4e-59 233.4 294 43.5
EL10Ac8g19220 Beta vulgaris HOM05D005023 ORTHO05D006009 3.5e-58 229.6 263 47.5
Ah.12g065340 Amaranthus hybridus HOM05D005023 ORTHO05D006009 4.5e-58 229.2 248 48.8
AUR62033976 Chenopodium quinoa HOM05D005023 ORTHO05D006009 5.0e-57 225.7 277 43.3
MSTRG.1995 Avicennia marina HOM05D005023 ORTHO05D006009 7.2e-56 221.9 253 44.7
SGA_v2.0_scaffold6G03150 Striga asiatica HOM05D005023 ORTHO05D006009 1.6e-55 220.7 291 41.2
THA.LOC104806696 Tarenaya hassleriana HOM05D005023 ORTHO05D006009 4.0e-54 216.1 300 41.3
SalBow6G4088 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.5e-53 214.2 256 43.0
SalBow6G6255 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.8e-52 209.9 248 42.3
SalBow8G0269 Salvia bowleyana HOM05D005023 ORTHO05D006009 6.3e-52 208.8 248 42.3
SalBow6G3389 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.1e-51 208.0 248 42.3
SalBow6G2872 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.4e-51 207.6 248 42.3
SalBow6G3524 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.4e-51 207.6 248 42.3
Hma1.2p1_1594F.1_g292650 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 1.8e-51 207.2 218 51.4
Aa31sc182G50 Aethionema arabicum HOM05D005023 ORTHO05D006009 2.4e-51 206.8 313 39.3
SalBow6G3383 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.4e-51 206.8 248 41.9
SalBow6G4332 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.4e-51 206.8 248 42.3
SalBow6G6227 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.4e-51 206.8 248 41.9
SalBow6G6031 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.1e-51 206.1 248 41.9
SalBow6G1717 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.4e-51 205.7 248 41.9
TPR.G3350 Trifolium pratense HOM05D005023 ORTHO05D006009 5.4e-51 205.7 243 46.9
PSO063G5178 Papaver somniferum HOM05D005023 ORTHO05D006009 2.7e-50 203.4 184 53.3
SalBow6G6846 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.9e-50 202.2 248 41.9
arahy.Tifrunner.gnm1.ann1.GAHP45 Arachis hypogaea HOM05D005023 ORTHO05D006009 7.8e-50 201.8 264 42.4
SalBow6G3781 Salvia bowleyana HOM05D005023 ORTHO05D006009 9.5e-48 194.9 230 44.3
Thhalv10000976m.g Eutrema salsugineum HOM05D005023 ORTHO05D006009 1.2e-47 194.5 269 41.6
AL8G11450 Arabidopsis lyrata HOM05D005023 ORTHO05D006009 1.4e-46 191.0 302 39.7
CARHR174600 Cardamine hirsuta HOM05D005023 ORTHO05D006009 1.4e-46 191.0 305 39.3
Hma1.2p1_2161F.1_g315630 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 2.3e-46 190.3 155 60.6
Sp2g11650 Schrenkiella parvula HOM05D005023 ORTHO05D006009 3.0e-46 189.9 310 36.8
SHI20240 Sapria himalayana HOM05D000452 ORTHO05D000647 4.0e-46 189.5 255 42.0
BcaC06g31439 Brassica carinata HOM05D005023 ORTHO05D006009 6.8e-46 188.7 286 39.5
CDE02G4581 Ceratophyllum demersum HOM05D005023 ORTHO05D006009 1.2e-45 188.0 331 36.3
AT5G46850 Arabidopsis thaliana HOM05D005023 ORTHO05D006009 5.7e-45 185.7 313 38.0
BraA06t27429Z Brassica rapa HOM05D005023 ORTHO05D006009 9.8e-45 184.9 294 36.7
A06p45570 Brassica napus HOM05D005023 ORTHO05D006009 1.7e-44 184.1 285 37.2
Carub.0008s0106 Capsella rubella HOM05D005023 ORTHO05D006009 6.4e-44 182.2 298 38.6
BcaC06g34337 Brassica carinata HOM05D005023 ORTHO05D006009 1.8e-43 180.6 285 37.9
C07p30210 Brassica napus HOM05D005023 ORTHO05D006009 1.8e-43 180.6 285 37.9
BolC7t43557H Brassica oleracea HOM05D005023 ORTHO05D006009 1.2e-42 177.9 285 37.2
MELO3C033076.2 Cucumis melo HOM05D005023 ORTHO05D006009 2.7e-42 176.8 244 37.3
Os12g0596900 Oryza sativa ssp. japonica HOM05D005023 ORTHO05D006009 2.3e-41 173.7 286 37.4
SalBow6G0983 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.9e-41 172.9 168 46.4
Sc01g0007280 Simmondsia chinensis HOM05D005023 ORTHO05D006009 8.6e-41 171.8 259 39.0
SalBow6G0969 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.9e-40 170.6 168 46.4
SalBow6G5471 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.9e-40 170.6 168 46.4
SalBow6G1311 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.2e-39 167.9 172 45.3
HPP92_014897 Vanilla planifolia HOM05D005023 ORTHO05D006009 1.4e-38 164.5 246 37.8
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 1.2e-37 161.4 208 41.8
HPP92_014902 Vanilla planifolia HOM05D005023 ORTHO05D006009 2.6e-37 160.2 246 37.8
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 3.4e-37 159.8 245 39.2
Zm00001eb030880 Zea mays HOM05D005023 ORTHO05D006009 3.4e-37 159.8 207 41.5
Actinidia09177 Actinidia chinensis HOM05D005023 ORTHO05D006009 3.2e-35 153.3 266 36.1
Hma1.2p1_0572F.1_g181170 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 6.2e-31 139.0 131 53.4
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 9.9e-29 131.7 142 47.9
TAR375G0008 Trochodendron aralioides HOM05D005023 ORTHO05D006009 1.1e-27 128.3 204 37.7
Mapoly0088s0063 Marchantia polymorpha HOM05D005023 ORTHO05D006009 2.3e-25 120.6 204 33.3
SalBow6G6268 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.1e-25 119.4 161 41.0
MELO3C011047.2 Cucumis melo HOM05D005023 ORTHO05D006009 2.0e-21 107.5 102 50.0
SalBow6G0951 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.6e-21 105.5 135 40.7
SMO358G0075 Selaginella moellendorffii HOM05D005023 ORTHO05D006009 1.7e-17 94.4 199 30.7
Pp3c13_7870 Physcomitrium patens HOM05D005023 ORTHO05D006009 1.9e-16 90.9 211 31.8
CSS0036970 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 5.8e-13 79.3 92 45.7
SEGI_33873 Sequoiadendron giganteum HOM05D005023 ORTHO05D006009 1.3e-09 68.2 74 43.2
AagrBONN_evm.TU.Sc2ySwM_344.1294 Anthoceros agrestis HOM05D005023 ORTHO05D006009 4.8e-07 59.7 152 30.3


User provided reference genes

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