Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G4196 Fragaria x ananassa HOM05D002759 ORTHO05D003290 7.0e-248 860.1 429 100.0
FAN25G1732 Fragaria x ananassa HOM05D002759 ORTHO05D003290 7.4e-181 637.5 574 63.2
FAN16G3014 Fragaria x ananassa HOM05D002759 ORTHO05D003290 1.5e-178 629.8 572 63.1
FvH4_3g35420 Fragaria vesca HOM05D002759 ORTHO05D003290 1.0e-177 627.1 575 62.6
FAN11G2638 Fragaria x ananassa HOM05D002759 ORTHO05D003290 6.5e-177 624.4 575 62.3
RcHm_v2.0_Chr7g0222331 Rosa chinensis HOM05D002759 ORTHO05D003290 2.4e-163 579.3 574 58.4
FvH4_5g29932 Fragaria vesca HOM05D002759 ORTHO05D003290 4.9e-108 395.6 209 96.2
FAN08G0368 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.4e-107 394.0 443 55.1
MD15G1418900 Malus domestica HOM05D002759 ORTHO05D003290 2.4e-91 340.1 589 38.7
Prupe.1G563000 Prunus persica HOM05D002759 ORTHO05D003290 3.4e-85 319.7 404 47.0
Haze_21022 Corylus avellana HOM05D002759 ORTHO05D003290 6.0e-82 308.9 403 45.4
CiPaw.05G042600 Carya illinoinensis HOM05D002759 ORTHO05D003290 1.1e-78 298.1 391 43.7
TWI59G0497 Tripterygium wilfordii HOM05D002759 ORTHO05D003290 1.9e-67 260.8 389 41.6
CANSAT11G0811 Cannabis sativa HOM05D002759 ORTHO05D003290 3.2e-67 260.0 406 37.9
QL02p098685 Quercus lobata HOM05D002759 ORTHO05D003290 9.4e-67 258.5 445 38.2
FvH4_5g29931 Fragaria vesca HOM05D002759 ORTHO05D003290 6.7e-65 252.3 124 100.0
Dinv24260 Davidia involucrata HOM05D002759 ORTHO05D003290 3.3e-64 250.0 396 38.1
MD00G1166400 Malus domestica HOM05D002759 ORTHO05D003290 2.2e-63 247.3 492 35.6
Rhsim11G0131800 Rhododendron simsii HOM05D002759 ORTHO05D003290 6.3e-63 245.7 471 34.0
Actinidia39057 Actinidia chinensis HOM05D002759 ORTHO05D003290 5.3e-62 242.7 434 36.2
Lj9C311G18 Lonicera japonica HOM05D002759 ORTHO05D003290 2.6e-61 240.4 396 38.6
GSVIVG01023021001 Vitis vinifera HOM05D002759 ORTHO05D003290 3.2e-59 233.4 565 31.5
Atru.chr6.1027 Acer truncatum HOM05D002759 ORTHO05D003290 5.5e-59 232.6 416 35.6
Glyma.08G184200 Glycine max HOM05D002759 ORTHO05D003290 1.0e-57 228.4 426 36.4
Ciclev10000008m.g Citrus clementina HOM05D002759 ORTHO05D003290 1.4e-57 228.0 478 32.8
TAR381G0620 Trochodendron aralioides HOM05D002759 ORTHO05D003290 1.4e-57 228.0 470 31.7
Atru.chr6.1078 Acer truncatum HOM05D002759 ORTHO05D003290 1.8e-57 227.6 416 35.1
Ca_00091_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 2.3e-57 227.3 422 33.6
Ca_29930_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 2.3e-57 227.3 422 33.6
Potri.003G021700 Populus trichocarpa HOM05D002759 ORTHO05D003290 5.1e-57 226.1 403 36.5
Sed0002146 Sechium edule HOM05D002759 ORTHO05D003290 2.6e-56 223.8 405 38.0
ClCG08G010020 Citrullus lanatus HOM05D002759 ORTHO05D003290 7.4e-56 222.2 420 37.1
Lalb_Chr20g0123401 Lupinus albus HOM05D002759 ORTHO05D003290 2.2e-55 220.7 394 37.8
Phvul.006G212401 Phaseolus vulgaris HOM05D002759 ORTHO05D003290 3.7e-55 219.9 392 35.2
Lsat_1_v5_gn_5_109460 Lactuca sativa HOM05D002759 ORTHO05D003290 1.1e-54 218.4 561 28.9
CsaV3_6G032190 Cucumis sativus L. HOM05D002759 ORTHO05D003290 1.4e-54 218.0 410 38.3
MELO3C011463.2 Cucumis melo HOM05D002759 ORTHO05D003290 2.4e-54 217.2 410 37.3
Manes.07G013200 Manihot esculenta HOM05D002759 ORTHO05D003290 7.0e-54 215.7 411 36.3
Sabra03G0013600 Salix brachista HOM05D002759 ORTHO05D003290 1.5e-53 214.5 424 34.7
Lj6g0007416 Lotus japonicus HOM05D002759 ORTHO05D003290 1.7e-52 211.1 387 34.9
arahy.Tifrunner.gnm1.ann1.YVTC7U Arachis hypogaea HOM05D002759 ORTHO05D003290 1.5e-51 208.0 397 36.0
Lj1g0017629 Lotus japonicus HOM05D002759 ORTHO05D003290 2.5e-51 207.2 387 34.1
TPR.G2149 Trifolium pratense HOM05D002759 ORTHO05D003290 1.6e-50 204.5 425 31.1
CAN.G1352.21 Capsicum annuum HOM05D002759 ORTHO05D003290 4.7e-50 203.0 384 33.6
Nitab4.5_0004005g0050 Nicotiana tabacum HOM05D002759 ORTHO05D003290 6.1e-50 202.6 416 32.2
arahy.Tifrunner.gnm1.ann1.VDG0KY Arachis hypogaea HOM05D002759 ORTHO05D003290 1.8e-49 201.1 397 34.8
CSS0015736 Camellia sinensis var. sinensis HOM05D002759 ORTHO05D003290 5.2e-49 199.5 320 37.2
Nitab4.5_0005539g0020 Nicotiana tabacum HOM05D002759 ORTHO05D003290 5.2e-49 199.5 419 32.0
ECA234G1843 Erigeron canadensis HOM05D002759 ORTHO05D003290 8.8e-49 198.7 479 29.9
Peaxi162Scf00011g00138 Petunia axillaris HOM05D002759 ORTHO05D003290 4.4e-48 196.4 395 33.4
Psat1g219920 Pisum sativum HOM05D002759 ORTHO05D003290 1.7e-47 194.5 474 31.4
Gohir.A01G176550 Gossypium hirsutum HOM05D002759 ORTHO05D003290 2.8e-47 193.7 389 34.7
Gohir.D01G167366 Gossypium hirsutum HOM05D002759 ORTHO05D003290 8.2e-47 192.2 389 34.4
Medtr7g023120 Medicago truncatula HOM05D002759 ORTHO05D003290 1.4e-46 191.4 421 32.1
Migut.B00666 Erythranthe guttata HOM05D002759 ORTHO05D003290 1.8e-46 191.0 421 32.5
Sopen01g046990 Solanum pennellii HOM05D002759 ORTHO05D003290 1.8e-46 191.0 382 33.0
Solyc01g104490.3 Solanum lycopersicum HOM05D002759 ORTHO05D003290 3.1e-46 190.3 382 32.7
HanXRQChr10g0290421 Helianthus annuus HOM05D002759 ORTHO05D003290 7.7e-45 185.7 553 28.8
SalBow5G5260 Salvia bowleyana HOM05D002759 ORTHO05D003290 2.2e-44 184.1 497 29.4
PSO170G2118 Papaver somniferum HOM05D002759 ORTHO05D003290 2.9e-44 183.7 413 30.0
PSO528G0214 Papaver somniferum HOM05D002759 ORTHO05D003290 1.5e-43 181.4 413 29.5
Duzib052G0069 Durio zibethinus HOM05D002759 ORTHO05D003290 2.5e-43 180.6 389 31.6
PGR042G2027 Punica granatum HOM05D002759 ORTHO05D003290 3.2e-43 180.3 409 33.5
Cc02_g22260 Coffea canephora HOM05D002759 ORTHO05D003290 2.7e-42 177.2 408 31.6
Eucgr.G00634 Eucalyptus grandis HOM05D002759 ORTHO05D003290 6.1e-42 176.0 417 32.4
Medtr2g007790 Medicago truncatula HOM05D002759 ORTHO05D003290 4.4e-40 169.9 395 29.9
Nn5g28049 Nelumbo nucifera HOM05D002759 ORTHO05D003290 5.7e-40 169.5 427 30.0
DCAR_005626 Daucus carota HOM05D002759 ORTHO05D003290 7.5e-40 169.1 393 32.8
FAN04G0662 Fragaria x ananassa HOM05D002759 ORTHO05D003290 7.5e-40 169.1 97 87.6
THA.LOC104814230 Tarenaya hassleriana HOM05D002759 ORTHO05D003290 4.8e-39 166.4 446 28.7
COL.COLO4_08439 Corchorus olitorius HOM05D002759 ORTHO05D003290 8.3e-39 165.6 435 29.4
Cpa.g.sc148.29 Carica papaya HOM05D002759 ORTHO05D003290 1.1e-38 165.2 303 37.0
BraA01t01371Z Brassica rapa HOM05D002759 ORTHO05D003290 5.0e-36 156.4 379 27.7
AL7G30550 Arabidopsis lyrata HOM05D002759 ORTHO05D003290 1.5e-35 154.8 392 29.6
Aa31LG6G5020 Aethionema arabicum HOM05D002759 ORTHO05D003290 1.2e-34 151.8 387 26.1
C01p17510 Brassica napus HOM05D002759 ORTHO05D003290 2.7e-34 150.6 383 27.2
Thhalv10024187m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 2.7e-34 150.6 413 27.4
A01p14240 Brassica napus HOM05D002759 ORTHO05D003290 3.6e-34 150.2 379 27.2
Carub.0007s1830 Capsella rubella HOM05D002759 ORTHO05D003290 4.7e-34 149.8 402 28.9
BcaNung01007 Brassica carinata HOM05D002759 ORTHO05D003290 1.4e-33 148.3 386 28.0
BcaC09g51048 Brassica carinata HOM05D002759 ORTHO05D003290 3.0e-33 147.1 384 27.6
BolC1t01691H Brassica oleracea HOM05D002759 ORTHO05D003290 3.0e-33 147.1 384 27.6
AT4G22970 Arabidopsis thaliana HOM05D002759 ORTHO05D003290 2.2e-31 141.0 401 27.9
AUR62035559 Chenopodium quinoa HOM05D002759 ORTHO05D003290 2.8e-31 140.6 374 28.9
Sp7g21060 Schrenkiella parvula HOM05D002759 ORTHO05D003290 1.1e-30 138.7 369 27.4
EL10Ac3g05252 Beta vulgaris HOM05D002759 ORTHO05D003290 1.4e-30 138.3 341 29.6
C07p52320 Brassica napus HOM05D002759 ORTHO05D003290 1.4e-30 138.3 395 27.3
BolC7t45725H Brassica oleracea HOM05D002759 ORTHO05D003290 1.4e-30 138.3 395 27.3
AUR62006068 Chenopodium quinoa HOM05D002759 ORTHO05D003290 1.4e-30 138.3 380 28.2
SGA_v2.0_scaffold110G31284 Striga asiatica HOM05D002759 ORTHO05D003290 1.4e-30 138.3 325 30.8
A03p53910 Brassica napus HOM05D002759 ORTHO05D003290 2.4e-30 137.5 396 27.5
BraA03t14460Z Brassica rapa HOM05D002759 ORTHO05D003290 2.4e-30 137.5 396 27.5
FAN13G3161 Fragaria x ananassa HOM05D003050 ORTHO05D003513 9.1e-30 135.6 83 85.5
Hund11642 Selenicereus undatus HOM05D002759 ORTHO05D003290 5.9e-29 132.9 377 28.9
Ah.07g205390 Amaranthus hybridus HOM05D002759 ORTHO05D003290 2.9e-28 130.6 454 27.1
Aqoxy7G02142 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 2.9e-28 130.6 381 27.6
Hund17372 Selenicereus undatus HOM05D002759 ORTHO05D003290 2.9e-28 130.6 346 32.7
CsaV3_6G032170 Cucumis sativus L. HOM05D002759 ORTHO05D003290 1.9e-27 127.9 266 35.7
Gorai.002G207900 Gossypium raimondii HOM05D002759 ORTHO05D003290 1.8e-25 121.3 212 36.8
Aqoxy3G00692 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 1.2e-24 118.6 412 25.5
CARHR290780 Cardamine hirsuta HOM05D002759 ORTHO05D003290 3.4e-24 117.1 212 30.7
CDE09G0711 Ceratophyllum demersum HOM05D002759 ORTHO05D003290 5.0e-20 103.2 209 34.9
Glyma.15G048100 Glycine max HOM05D002759 ORTHO05D003290 2.1e-18 97.8 114 43.9
Aqoxy3G00698 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 8.0e-18 95.9 246 25.6
Zm00001eb193470 Zea mays HOM05D002759 ORTHO05D003290 4.0e-17 93.6 395 27.3
RcHm_v2.0_Chr7g0177921 Rosa chinensis HOM05D002759 ORTHO05D003290 1.2e-16 92.0 226 32.7
Thecc.02G041500 Theobroma cacao HOM05D002759 ORTHO05D003290 2.6e-16 90.9 202 32.7
AL7G28920 Arabidopsis lyrata HOM05D002759 ORTHO05D003290 4.4e-16 90.1 406 24.1
CSS0019427 Camellia sinensis var. sinensis HOM05D002759 ORTHO05D003290 4.1e-14 83.6 111 41.4
Actinidia00220 Actinidia chinensis HOM05D002759 ORTHO05D003290 5.4e-14 83.2 142 33.8
unitig_26.g9018 Utricularia gibba HOM05D002759 ORTHO05D003290 1.2e-13 82.0 128 35.9
vmacro01778 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 8.6e-12 75.9 131 33.6
MD08G1225900 Malus domestica HOM05D002759 ORTHO05D003290 2.1e-10 71.2 75 52.0
SEGI_32877 Sequoiadendron giganteum HOM05D015553 ORTHO05D015291 2.8e-10 70.9 305 25.2
SEGI_38062 Sequoiadendron giganteum HOM05D015553 ORTHO05D015291 1.7e-07 61.6 192 27.6
Cfa017189 Carpinus fangiana HOM05D002759 ORTHO05D003290 3.2e-06 57.4 45 51.1
SEGI_06029 Sequoiadendron giganteum HOM05D015553 ORTHO05D015291 4.1e-06 57.0 142 28.2
MD08G1226100 Malus domestica HOM05D002759 ORTHO05D003290 5.4e-06 56.6 70 44.3


User provided reference genes

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