Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G4187 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.3e-48 193.7 96 100.0
FvH4_5g34303 Fragaria vesca HOM05D003712 ORTHO05D004368 2.4e-47 191.8 96 99.0
FAN08G3545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.8e-42 173.7 86 98.8
FvH4_3g39481 Fragaria vesca HOM05D003712 ORTHO05D004368 6.1e-35 150.6 96 82.3
FAN11G3078 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.4e-33 144.8 95 77.9
RcHm_v2.0_Chr7g0234891 Rosa chinensis HOM05D003712 ORTHO05D004368 2.4e-31 138.7 122 62.3
FAN16G2504 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.4e-25 117.9 59 91.5
FAN02G2973 Fragaria x ananassa HOM05D003712 ORTHO05D004368 9.2e-23 110.2 91 57.1
RcHm_v2.0_Chr2g0161751 Rosa chinensis HOM05D003712 ORTHO05D004368 7.8e-22 107.1 96 52.1
FAN14G4046 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.7e-21 105.9 80 58.8
FvH4_6g44545 Fragaria vesca HOM05D003712 ORTHO05D004368 1.9e-20 102.4 98 52.0
Prupe.3G230900 Prunus persica HOM05D003712 ORTHO05D004368 7.3e-20 100.5 93 53.8
FAN09G2580 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.2e-19 99.8 127 44.1
Ciclev10033348m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.8e-18 95.9 92 51.1
Ciclev10017864m.g Citrus clementina HOM05D003712 ORTHO05D004368 4.0e-18 94.7 91 48.4
Thecc.06G200700 Theobroma cacao HOM05D003712 ORTHO05D004368 4.4e-17 91.3 92 43.5
Potri.007G109600 Populus trichocarpa HOM05D003712 ORTHO05D004368 9.9e-17 90.1 94 46.8
Hma1.2p1_0565F.1_g179610 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 2.2e-16 89.0 92 46.7
MBI06_g08453_MAGBIO Magnolia biondii HOM05D003712 ORTHO05D004368 2.2e-16 89.0 92 44.6
Manes.12G082800 Manihot esculenta HOM05D003712 ORTHO05D004368 8.3e-16 87.0 92 43.5
Potri.005G061780 Populus trichocarpa HOM05D003712 ORTHO05D004368 8.3e-16 87.0 93 47.3
Ciclev10003398m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.1e-15 86.7 88 47.7
Aqoxy5G01666 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.4e-15 86.3 95 46.3
Cfa014527 Carpinus fangiana HOM05D003712 ORTHO05D004368 1.4e-15 86.3 91 47.3
Hma1.2p1_0565F.1_g179590 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 1.4e-15 86.3 89 46.1
Actinidia24056 Actinidia chinensis HOM05D003712 ORTHO05D004368 1.9e-15 85.9 93 39.8
Aqoxy5G01667 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.9e-15 85.9 87 49.4
Cpa.g.sc228.6 Carica papaya HOM05D003712 ORTHO05D004368 1.9e-15 85.9 94 44.7
DCAR_004145 Daucus carota HOM05D003712 ORTHO05D004368 2.4e-15 85.5 92 45.7
DCAR_004146 Daucus carota HOM05D003712 ORTHO05D004368 2.4e-15 85.5 94 44.7
Migut.H01521 Erythranthe guttata HOM05D003712 ORTHO05D004368 2.4e-15 85.5 90 45.6
Potri.005G224300 Populus trichocarpa HOM05D003712 ORTHO05D004368 2.4e-15 85.5 90 41.1
Hma1.2p1_0565F.1_g179580 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 3.2e-15 85.1 90 48.9
Ciclev10003665m.g Citrus clementina HOM05D003712 ORTHO05D004368 4.1e-15 84.7 88 44.3
COL.COLO4_06989 Corchorus olitorius HOM05D003712 ORTHO05D004368 4.1e-15 84.7 92 46.7
MD17G1084800 Malus domestica HOM05D003712 ORTHO05D004368 4.1e-15 84.7 90 46.7
DCAR_008077 Daucus carota HOM05D003712 ORTHO05D004368 5.4e-15 84.3 84 48.8
MBI18_g37562_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 5.4e-15 84.3 94 43.6
Oeu032463.1 Olea europaea HOM05D003712 ORTHO05D004368 7.1e-15 84.0 84 46.4
FvH4_3g03881 Fragaria vesca HOM05D003712 ORTHO05D004368 9.2e-15 83.6 90 46.7
Gohir.A06G127300 Gossypium hirsutum HOM05D003712 ORTHO05D004368 9.2e-15 83.6 95 40.0
Gohir.D10G127800 Gossypium hirsutum HOM05D003712 ORTHO05D004368 9.2e-15 83.6 92 45.7
Gorai.011G140900 Gossypium raimondii HOM05D003712 ORTHO05D004368 9.2e-15 83.6 92 45.7
Prupe.3G230500 Prunus persica HOM05D003712 ORTHO05D004368 9.2e-15 83.6 94 45.7
SalBow7G0868 Salvia bowleyana HOM05D003712 ORTHO05D004368 9.2e-15 83.6 96 46.9
DCAR_004147 Daucus carota HOM05D003712 ORTHO05D004368 1.2e-14 83.2 104 43.3
FAN16G1684 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.2e-14 83.2 90 50.0
MD09G1090300 Malus domestica HOM05D003712 ORTHO05D004368 1.2e-14 83.2 97 45.4
FvH4_3g03882 Fragaria vesca HOM05D003712 ORTHO05D004368 2.1e-14 82.4 92 45.7
Potri.007G117900 Populus trichocarpa HOM05D003712 ORTHO05D004368 2.1e-14 82.4 96 44.8
COL.COLO4_31595 Corchorus olitorius HOM05D003712 ORTHO05D004368 3.5e-14 81.6 96 40.6
FAN21G1388 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.5e-14 81.6 89 40.4
Gohir.D06G128000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 3.5e-14 81.6 94 38.3
Gorai.010G149700 Gossypium raimondii HOM05D003712 ORTHO05D004368 3.5e-14 81.6 94 38.3
Manes.13G034200 Manihot esculenta HOM05D003712 ORTHO05D004368 3.5e-14 81.6 86 44.2
Potri.007G106900 Populus trichocarpa HOM05D003712 ORTHO05D004368 3.5e-14 81.6 96 45.8
Gohir.A10G139000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 6.0e-14 80.9 92 44.6
Gorai.011G141000 Gossypium raimondii HOM05D003712 ORTHO05D004368 6.0e-14 80.9 95 44.2
RcHm_v2.0_Chr5g0006151 Rosa chinensis HOM05D003712 ORTHO05D004368 6.0e-14 80.9 91 48.4
Oeu006542.1 Olea europaea HOM05D003712 ORTHO05D004368 7.8e-14 80.5 91 41.8
TAR626G1156 Trochodendron aralioides HOM05D003712 ORTHO05D004368 7.8e-14 80.5 92 40.2
DCAR_024926 Daucus carota HOM05D003712 ORTHO05D004368 1.0e-13 80.1 83 45.8
Gohir.D10G127900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.3e-13 79.7 95 43.2
HanXRQChr16g0517551 Helianthus annuus HOM05D003712 ORTHO05D004368 1.3e-13 79.7 91 45.1
Oeu006541.1 Olea europaea HOM05D003712 ORTHO05D004368 1.3e-13 79.7 91 45.1
Haze_06583 Corylus avellana HOM05D003712 ORTHO05D004368 1.7e-13 79.3 92 43.5
Oeu032464.1 Olea europaea HOM05D003712 ORTHO05D004368 2.3e-13 79.0 85 42.4
Gohir.A10G138900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 3.0e-13 78.6 95 44.2
TAR626G0105 Trochodendron aralioides HOM05D003712 ORTHO05D004368 3.9e-13 78.2 92 39.1
DCAR_008079 Daucus carota HOM05D003712 ORTHO05D004368 5.1e-13 77.8 99 42.4
DCAR_008081 Daucus carota HOM05D003712 ORTHO05D004368 5.1e-13 77.8 99 42.4
Peaxi162Scf00485g00072 Petunia axillaris HOM05D003712 ORTHO05D004368 5.1e-13 77.8 93 43.0
SalBow7G4100 Salvia bowleyana HOM05D003712 ORTHO05D004368 5.1e-13 77.8 83 47.0
QL01p014092 Quercus lobata HOM05D003712 ORTHO05D004368 6.6e-13 77.4 88 47.7
SalBow8G4951 Salvia bowleyana HOM05D003712 ORTHO05D004368 1.1e-12 76.6 87 40.2
Eucgr.I00207 Eucalyptus grandis HOM05D003712 ORTHO05D004368 1.5e-12 76.3 89 41.6
Prupe.3G230600 Prunus persica HOM05D003712 ORTHO05D004368 1.5e-12 76.3 92 41.3
Migut.M00339 Erythranthe guttata HOM05D003712 ORTHO05D004368 1.9e-12 75.9 87 42.5
Nitab4.5_0005244g0050 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.9e-12 75.9 98 43.9
Aqoxy4G02044 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 2.5e-12 75.5 84 41.7
FAN14G2952 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.5e-12 75.5 83 39.8
FAN14G3502 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.5e-12 75.5 83 39.8
Prupe.3G230700 Prunus persica HOM05D003712 ORTHO05D004368 2.5e-12 75.5 98 36.7
Aqoxy4G02036 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 3.3e-12 75.1 84 42.9
Haze_13069 Corylus avellana HOM05D003712 ORTHO05D004368 3.3e-12 75.1 90 44.4
Migut.M00335 Erythranthe guttata HOM05D003712 ORTHO05D004368 3.3e-12 75.1 87 41.4
Lsat_1_v5_gn_4_56621 Lactuca sativa HOM05D003712 ORTHO05D004368 3.3e-12 75.1 90 43.3
Prupe.3G230400 Prunus persica HOM05D003712 ORTHO05D004368 3.3e-12 75.1 93 41.9
Migut.M00336 Erythranthe guttata HOM05D003712 ORTHO05D004368 4.3e-12 74.7 88 42.0
Lsat_1_v5_gn_4_56561 Lactuca sativa HOM05D003712 ORTHO05D004368 4.3e-12 74.7 90 43.3
Lsat_1_v5_gn_4_56721 Lactuca sativa HOM05D003712 ORTHO05D004368 4.3e-12 74.7 90 43.3
Lsat_1_v5_gn_4_56741 Lactuca sativa HOM05D003712 ORTHO05D004368 4.3e-12 74.7 92 42.4
FvH4_6g44501 Fragaria vesca HOM05D003712 ORTHO05D004368 5.6e-12 74.3 93 40.9
FAN14G5484 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.6e-12 74.3 93 40.9
Nitab4.5_0008774g0010 Nicotiana tabacum HOM05D003712 ORTHO05D004368 9.6e-12 73.6 89 41.6
FAN02G1220 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.2e-11 73.2 70 44.3
Glyma.07G190500 Glycine max HOM05D003712 ORTHO05D004368 1.2e-11 73.2 71 42.3
TPR.G32428 Trifolium pratense HOM05D003712 ORTHO05D004368 1.2e-11 73.2 77 44.2
DCAR_004148 Daucus carota HOM05D003712 ORTHO05D004368 1.6e-11 72.8 54 51.9
Nitab4.5_0002956g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.6e-11 72.8 86 37.2
Lsat_1_v5_gn_4_56681 Lactuca sativa HOM05D003712 ORTHO05D004368 2.1e-11 72.4 90 42.2
Sed0020030 Sechium edule HOM05D003712 ORTHO05D004368 2.1e-11 72.4 95 43.2
Nitab4.5_0001871g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.6e-11 71.6 86 36.0
Actinidia11811 Actinidia chinensis HOM05D003712 ORTHO05D004368 4.7e-11 71.2 53 56.6
Dinv13825 Davidia involucrata HOM05D003712 ORTHO05D004368 4.7e-11 71.2 58 48.3
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 4.7e-11 71.2 74 40.5
FAN25G2638 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.7e-11 71.2 58 53.4
Lj4g0026887 Lotus japonicus HOM05D003712 ORTHO05D004368 4.7e-11 71.2 82 36.6
Nitab4.5_0014858g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 4.7e-11 71.2 82 43.9
HanXRQChr16g0517561 Helianthus annuus HOM05D003712 ORTHO05D004368 6.2e-11 70.9 86 43.0
Actinidia09903 Actinidia chinensis HOM05D003712 ORTHO05D004368 8.1e-11 70.5 69 44.9
MBI19_g03250_MAGBIO Magnolia biondii HOM05D000165 ORTHO05D008234 8.1e-11 70.5 52 46.2
PGSC0003DMG401022401 Solanum tuberosum HOM05D003712 ORTHO05D004368 8.1e-11 70.5 90 40.0
TPR.G32437 Trifolium pratense HOM05D003712 ORTHO05D004368 8.1e-11 70.5 71 43.7
CANSAT56G2493 Cannabis sativa HOM05D003712 ORTHO05D004368 1.1e-10 70.1 101 34.7
Prupe.4G037900 Prunus persica HOM05D003712 ORTHO05D004368 1.1e-10 70.1 82 40.2
Lsat_1_v5_gn_4_56541 Lactuca sativa HOM05D003712 ORTHO05D004368 1.4e-10 69.7 88 36.4
Peaxi162Scf00779g00018 Petunia axillaris HOM05D003712 ORTHO05D004368 1.4e-10 69.7 92 40.2
Peaxi162Scf00089g01522 Petunia axillaris HOM05D003712 ORTHO05D004368 1.8e-10 69.3 80 42.5
TPR.G22155 Trifolium pratense HOM05D003712 ORTHO05D004368 1.8e-10 69.3 77 44.2
Aqoxy4G02045 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 2.4e-10 68.9 91 39.6
Medtr4g091020 Medicago truncatula HOM05D003712 ORTHO05D004368 2.4e-10 68.9 77 44.2
CiPaw.07G040700 Carya illinoinensis HOM05D003712 ORTHO05D004368 3.1e-10 68.6 87 43.7
Glyma.08G058700 Glycine max HOM05D003712 ORTHO05D004368 3.1e-10 68.6 80 40.0
FAN16G2577 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.0e-10 68.2 49 49.0
CiPaw.10G118000 Carya illinoinensis HOM05D003712 ORTHO05D004368 5.2e-10 67.8 91 36.3
PGSC0003DMG400042227 Solanum tuberosum HOM05D003712 ORTHO05D004368 5.2e-10 67.8 71 40.8
ECA234G4130 Erigeron canadensis HOM05D003712 ORTHO05D004368 6.8e-10 67.4 50 46.0
ECA236G2370 Erigeron canadensis HOM05D003712 ORTHO05D004368 6.8e-10 67.4 54 50.0
Medtr4g091010 Medicago truncatula HOM05D003712 ORTHO05D004368 6.8e-10 67.4 86 40.7
Eucgr.E03691 Eucalyptus grandis HOM05D003712 ORTHO05D004368 8.9e-10 67.0 65 43.1
Prupe.1G064500 Prunus persica HOM05D003712 ORTHO05D004368 8.9e-10 67.0 51 49.0
FvH4_3g39491 Fragaria vesca HOM05D003712 ORTHO05D004368 1.2e-09 66.6 81 40.7
Nitab4.5_0001871g0120 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.2e-09 66.6 57 45.6
FvH4_6g24132 Fragaria vesca HOM05D003712 ORTHO05D004368 1.5e-09 66.2 49 51.0
HanXRQChr15g0488611 Helianthus annuus HOM05D003712 ORTHO05D004368 1.5e-09 66.2 53 52.8
HanXRQChr15g0488621 Helianthus annuus HOM05D003712 ORTHO05D004368 1.5e-09 66.2 53 52.8
Nitab4.5_0000649g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.5e-09 66.2 93 36.6
Nitab4.5_0005389g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.5e-09 66.2 95 42.1
Solyc07g054700.3 Solanum lycopersicum HOM05D003712 ORTHO05D004368 1.5e-09 66.2 78 37.2
FAN14G3156 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.0e-09 65.9 92 38.0
Lsat_1_v5_gn_4_69400 Lactuca sativa HOM05D003712 ORTHO05D004368 2.0e-09 65.9 91 37.4
Nitab4.5_0002791g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.0e-09 65.9 81 39.5
RcHm_v2.0_Chr2g0161661 Rosa chinensis HOM05D003712 ORTHO05D004368 2.0e-09 65.9 50 48.0
RcHm_v2.0_Chr2g0161721 Rosa chinensis HOM05D003712 ORTHO05D004368 2.0e-09 65.9 50 48.0
FAN21G1030 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.6e-09 65.5 89 37.1
FAN25G3769 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.6e-09 65.5 89 37.1
FvH4_6g44841 Fragaria vesca HOM05D003712 ORTHO05D004368 3.4e-09 65.1 61 39.3
FAN18G0797 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.4e-09 64.7 90 40.0
Medtr4g091000 Medicago truncatula HOM05D003712 ORTHO05D004368 4.4e-09 64.7 53 43.4
arahy.Tifrunner.gnm1.ann1.UHMW3K Arachis hypogaea HOM05D003712 ORTHO05D004368 5.8e-09 64.3 80 33.8
FAN11G0545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.8e-09 64.3 96 29.2
Phvul.002G222400 Phaseolus vulgaris HOM05D003712 ORTHO05D004368 5.8e-09 64.3 93 34.4
Potri.002G038350 Populus trichocarpa HOM05D003712 ORTHO05D004368 5.8e-09 64.3 79 36.7
RcHm_v2.0_Chr5g0071201 Rosa chinensis HOM05D003712 ORTHO05D004368 5.8e-09 64.3 84 39.3
Nitab4.5_0002956g0060 Nicotiana tabacum HOM05D003712 ORTHO05D004368 7.6e-09 63.9 80 35.0
Solyc07g054710.2 Solanum lycopersicum HOM05D003712 ORTHO05D004368 7.6e-09 63.9 94 31.9
ATR0693G124 Amborella trichopoda HOM05D003712 ORTHO05D004368 9.9e-09 63.5 85 34.1
CsaV3_6G049680 Cucumis sativus L. HOM05D003712 ORTHO05D004368 9.9e-09 63.5 89 36.0
FAN25G1764 Fragaria x ananassa HOM05D003712 ORTHO05D004368 9.9e-09 63.5 69 40.6
Sed0026588 Sechium edule HOM05D003712 ORTHO05D004368 1.3e-08 63.2 87 37.9
ClCG00G003860 Citrullus lanatus HOM05D003712 ORTHO05D004368 2.2e-08 62.4 82 35.4
ClCG01G022520 Citrullus lanatus HOM05D003712 ORTHO05D004368 2.2e-08 62.4 82 35.4
HanXRQChr05g0131191 Helianthus annuus HOM05D003712 ORTHO05D004368 2.9e-08 62.0 77 40.3
Nitab4.5_0004216g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.9e-08 62.0 80 38.8
TWI18G1344 Tripterygium wilfordii HOM05D003712 ORTHO05D004368 2.9e-08 62.0 91 34.1
Nitab4.5_0008654g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.8e-08 61.6 81 34.6
Os01g0783000 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 6.4e-08 60.8 51 39.2
RcHm_v2.0_Chr5g0006161 Rosa chinensis HOM05D003712 ORTHO05D004368 6.4e-08 60.8 103 27.2
ClCG00G003850 Citrullus lanatus HOM05D003712 ORTHO05D004368 8.4e-08 60.5 48 47.9
ClCG01G022510 Citrullus lanatus HOM05D003712 ORTHO05D004368 8.4e-08 60.5 48 47.9
DCAR_012976 Daucus carota HOM05D003712 ORTHO05D004368 1.1e-07 60.1 59 42.4
FvH4_5g02870 Fragaria vesca HOM05D003712 ORTHO05D004368 1.4e-07 59.7 90 37.8
Zm00001eb369810 Zea mays HOM05D003712 ORTHO05D004368 2.4e-07 58.9 50 42.0
CsaV3_6G049690 Cucumis sativus L. HOM05D003712 ORTHO05D004368 7.1e-07 57.4 77 36.4
DCAR_028776 Daucus carota HOM05D003712 ORTHO05D004368 1.2e-06 56.6 90 27.8
Lj4g0012776 Lotus japonicus HOM05D003712 ORTHO05D004368 1.6e-06 56.2 82 35.4
FvH4_6g44490 Fragaria vesca HOM05D003712 ORTHO05D004368 2.7e-06 55.5 46 45.7
Peaxi162Scf00779g00008 Petunia axillaris HOM05D003712 ORTHO05D004368 2.7e-06 55.5 87 33.3
MBI18_g37563_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 4.6e-06 54.7 46 45.7


User provided reference genes

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