Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G4158 Fragaria x ananassa HOM05D001641 ORTHO05D015676 1.4e-53 212.6 105 100.0
FAN02G2021 Fragaria x ananassa HOM05D001641 ORTHO05D015676 1.2e-52 209.5 105 98.1
FAN18G2532 Fragaria x ananassa HOM05D001641 ORTHO05D015676 1.2e-52 209.5 105 98.1
FAN11G3680 Fragaria x ananassa HOM05D001641 ORTHO05D015676 3.5e-52 208.0 105 97.1
FAN26G0827 Fragaria x ananassa HOM05D001641 ORTHO05D015676 3.5e-52 208.0 105 97.1
FAN05G4340 Fragaria x ananassa HOM05D001641 ORTHO05D015676 6.1e-52 207.2 105 97.1
FAN14G0359 Fragaria x ananassa HOM05D001641 ORTHO05D015676 6.1e-52 207.2 105 97.1
FAN05G2622 Fragaria x ananassa HOM05D001641 ORTHO05D015676 1.8e-51 205.7 105 95.2
FAN11G2159 Fragaria x ananassa HOM05D001641 ORTHO05D015676 5.1e-51 204.1 105 95.2
FAN04G0496 Fragaria x ananassa HOM05D001641 ORTHO05D015676 4.8e-49 197.6 100 95.0
FAN26G2928 Fragaria x ananassa HOM05D001641 ORTHO05D015676 6.9e-40 167.2 84 98.8
FAN17G2830 Fragaria x ananassa HOM05D001641 ORTHO05D015676 2.0e-39 165.6 84 97.6
FAN20G2072 Fragaria x ananassa HOM05D001448 ORTHO05D007650 8.8e-35 150.2 81 93.8
FvH4_6g12000 Fragaria vesca HOM05D001641 ORTHO05D001667 1.8e-32 142.5 141 58.9
FAN05G0357 Fragaria x ananassa HOM05D001641 ORTHO05D001667 1.8e-32 142.5 141 58.9
FAN14G4770 Fragaria x ananassa HOM05D001641 ORTHO05D001667 1.8e-32 142.5 141 58.9
FAN02G3953 Fragaria x ananassa HOM05D001641 ORTHO05D001667 5.3e-32 141.0 141 58.2
FAN09G4135 Fragaria x ananassa HOM05D001641 ORTHO05D001667 2.0e-31 139.0 141 57.4
FAN14G1423 Fragaria x ananassa HOM05D001641 ORTHO05D001667 2.6e-31 138.7 141 57.4
RcHm_v2.0_Chr3g0463831 Rosa chinensis HOM05D001641 ORTHO05D001667 3.7e-25 118.2 152 49.3
Thecc.05G021900 Theobroma cacao HOM05D001641 ORTHO05D001667 2.2e-17 92.4 135 45.9
PGSC0003DMG400020347 Solanum tuberosum HOM05D001641 ORTHO05D001667 6.3e-17 90.9 135 45.2
Sabra16G0107700 Salix brachista HOM05D001641 ORTHO05D001667 3.1e-16 88.6 136 46.3
Manes.09G102200 Manihot esculenta HOM05D001641 ORTHO05D001667 4.1e-16 88.2 134 45.5
Solyc09g014160.3 Solanum lycopersicum HOM05D001641 ORTHO05D001667 9.1e-16 87.0 136 42.6
Sopen09g007030 Solanum pennellii HOM05D001641 ORTHO05D001667 9.1e-16 87.0 136 42.6
CAN.G355.13 Capsicum annuum HOM05D001641 ORTHO05D001667 1.6e-15 86.3 129 41.9
Sabra06G0074200 Salix brachista HOM05D001641 ORTHO05D001667 2.0e-15 85.9 139 46.8
Ciclev10011239m.g Citrus clementina HOM05D001641 ORTHO05D001667 2.7e-15 85.5 136 44.9
COL.COLO4_14595 Corchorus olitorius HOM05D001641 ORTHO05D001667 2.7e-15 85.5 134 44.8
Duzib093G1558 Durio zibethinus HOM05D001641 ORTHO05D001667 2.7e-15 85.5 136 43.4
Duzib106G0289 Durio zibethinus HOM05D001641 ORTHO05D001667 3.5e-15 85.1 136 43.4
Potri.006G096600 Populus trichocarpa HOM05D001641 ORTHO05D001667 3.5e-15 85.1 139 46.0
Peaxi162Scf00141g00081 Petunia axillaris HOM05D001641 ORTHO05D001667 4.5e-15 84.7 140 40.7
MD04G1147100 Malus domestica HOM05D001641 ORTHO05D001667 5.9e-15 84.3 140 43.6
Potri.016G111400 Populus trichocarpa HOM05D001641 ORTHO05D001667 7.7e-15 84.0 137 46.0
MD12G1160400 Malus domestica HOM05D001641 ORTHO05D001667 1.0e-14 83.6 141 44.0
CiPaw.09G206200 Carya illinoinensis HOM05D001641 ORTHO05D001667 1.7e-14 82.8 139 41.7
Duzib128G0887 Durio zibethinus HOM05D001641 ORTHO05D001667 1.7e-14 82.8 134 43.3
Cfa017255 Carpinus fangiana HOM05D001641 ORTHO05D001667 2.9e-14 82.0 138 42.8
Haze_20951 Corylus avellana HOM05D001641 ORTHO05D001667 2.9e-14 82.0 138 42.8
Haze_20953 Corylus avellana HOM05D001641 ORTHO05D001667 2.9e-14 82.0 138 42.8
Dinv37084 Davidia involucrata HOM05D001641 ORTHO05D001667 2.9e-14 82.0 138 39.9
MSTRG.26798 Avicennia marina HOM05D001641 ORTHO05D001667 3.8e-14 81.6 137 40.1
Cc06_g01660 Coffea canephora HOM05D001641 ORTHO05D001667 5.0e-14 81.3 109 47.7
CSS0004795 Camellia sinensis var. sinensis HOM05D001641 ORTHO05D001667 6.5e-14 80.9 134 44.0
CSS0016472 Camellia sinensis var. sinensis HOM05D001641 ORTHO05D001667 6.5e-14 80.9 134 44.0
Solyc10g085070.3 Solanum lycopersicum HOM05D001641 ORTHO05D001667 6.5e-14 80.9 122 43.4
Sopen10g034530 Solanum pennellii HOM05D001641 ORTHO05D001667 6.5e-14 80.9 122 43.4
PGSC0003DMG400011018 Solanum tuberosum HOM05D001641 ORTHO05D001667 6.5e-14 80.9 122 43.4
TWI77G0066 Tripterygium wilfordii HOM05D001641 ORTHO05D001667 6.5e-14 80.9 132 46.2
CANSAT35G1325 Cannabis sativa HOM05D001641 ORTHO05D001667 8.5e-14 80.5 132 41.7
GSVIVG01034008001 Vitis vinifera HOM05D001641 ORTHO05D001667 1.1e-13 80.1 108 46.3
Gohir.A11G328700 Gossypium hirsutum HOM05D001641 ORTHO05D001667 2.5e-13 79.0 122 45.1
ClCG10G021840 Citrullus lanatus HOM05D001641 ORTHO05D001667 3.2e-13 78.6 130 40.8
Manes.08G087800 Manihot esculenta HOM05D001641 ORTHO05D001667 3.2e-13 78.6 143 42.0
Gohir.A04G088300 Gossypium hirsutum HOM05D001641 ORTHO05D001667 5.5e-13 77.8 135 41.5
Gorai.007G378100 Gossypium raimondii HOM05D001641 ORTHO05D001667 5.5e-13 77.8 121 43.0
Hma1.2p1_0244F.1_g101220 Hydrangea macrophylla HOM05D001641 ORTHO05D001667 5.5e-13 77.8 136 43.4
Nitab4.5_0000008g0730 Nicotiana tabacum HOM05D001641 ORTHO05D001667 5.5e-13 77.8 144 41.0
Nitab4.5_0001837g0010 Nicotiana tabacum HOM05D001641 ORTHO05D001667 7.2e-13 77.4 144 41.0
Atru.chr8.2199 Acer truncatum HOM05D001641 ORTHO05D001667 9.5e-13 77.0 140 42.9
Peaxi162Scf00009g00195 Petunia axillaris HOM05D001641 ORTHO05D001667 9.5e-13 77.0 124 41.1
Gohir.D04G128700 Gossypium hirsutum HOM05D001641 ORTHO05D001667 1.2e-12 76.6 135 40.7
Cpa.g.sc163.1 Carica papaya HOM05D001641 ORTHO05D001667 2.1e-12 75.9 135 40.7
TWI53G0423 Tripterygium wilfordii HOM05D001641 ORTHO05D001667 3.6e-12 75.1 130 40.0
Dinv35512 Davidia involucrata HOM05D001641 ORTHO05D001667 6.1e-12 74.3 138 39.9
Gorai.012G111800 Gossypium raimondii HOM05D001641 ORTHO05D001667 6.1e-12 74.3 135 40.0
TWI74G0768 Tripterygium wilfordii HOM05D001641 ORTHO05D001667 6.1e-12 74.3 136 44.1
Oeu004615.1 Olea europaea HOM05D001641 ORTHO05D001667 1.0e-11 73.6 144 35.4
Oeu044361.1 Olea europaea HOM05D001641 ORTHO05D001667 1.0e-11 73.6 144 36.8
Nitab4.5_0004912g0080 Nicotiana tabacum HOM05D001641 ORTHO05D001667 1.4e-11 73.2 123 43.1
Nitab4.5_0000652g0140 Nicotiana tabacum HOM05D001641 ORTHO05D001667 3.0e-11 72.0 125 42.4
TAR623G0053 Trochodendron aralioides HOM05D001641 ORTHO05D001667 3.0e-11 72.0 136 38.2
SHI12785 Sapria himalayana HOM05D001641 ORTHO05D001667 5.2e-11 71.2 108 44.4
PGR031G0169 Punica granatum HOM05D001641 ORTHO05D001667 8.8e-11 70.5 146 38.4
Sed0022239 Sechium edule HOM05D001641 ORTHO05D001667 1.2e-10 70.1 120 42.5
AUR62041358 Chenopodium quinoa HOM05D001641 ORTHO05D001667 1.5e-10 69.7 144 36.8
Lj3A956T51 Lonicera japonica HOM05D001641 ORTHO05D001667 1.5e-10 69.7 122 40.2
AUR62025773 Chenopodium quinoa HOM05D001641 ORTHO05D001667 2.6e-10 68.9 52 67.3
Migut.J00224 Erythranthe guttata HOM05D001641 ORTHO05D001667 2.6e-10 68.9 122 41.0
DCAR_015457 Daucus carota HOM05D001641 ORTHO05D001667 3.4e-10 68.6 131 37.4
Prupe.6G270900 Prunus persica HOM05D001641 ORTHO05D001667 3.4e-10 68.6 48 77.1
Rhsim05G0206300 Rhododendron simsii HOM05D001641 ORTHO05D001667 3.4e-10 68.6 140 39.3
Sc01g0006830 Simmondsia chinensis HOM05D001641 ORTHO05D001667 3.4e-10 68.6 138 37.7
MSTRG.10231 Avicennia marina HOM05D001641 ORTHO05D001667 4.4e-10 68.2 49 71.4
Nn2g13606 Nelumbo nucifera HOM05D001641 ORTHO05D001667 5.7e-10 67.8 134 38.1
SGA_v2.0_scaffold75G24999 Striga asiatica HOM05D001641 ORTHO05D001667 5.7e-10 67.8 112 41.1
Migut.L01994 Erythranthe guttata HOM05D001641 ORTHO05D001667 9.8e-10 67.0 137 39.4
arahy.Tifrunner.gnm1.ann1.4BEG1R Arachis hypogaea HOM05D001641 ORTHO05D001667 1.3e-09 66.6 145 31.7
Hma1.2p1_0763F.1_g214660 Hydrangea macrophylla HOM05D001641 ORTHO05D001667 1.3e-09 66.6 135 40.0
unitig_899.g15417 Utricularia gibba HOM05D001641 ORTHO05D001667 1.7e-09 66.2 117 38.5
ECA236G1576 Erigeron canadensis HOM05D001641 ORTHO05D001667 2.2e-09 65.9 143 34.3
HanXRQChr08g0220551 Helianthus annuus HOM05D001641 ORTHO05D001667 2.8e-09 65.5 133 33.8
Lj2C80T3 Lonicera japonica HOM05D001641 ORTHO05D001667 2.8e-09 65.5 134 36.6
Lalb_Chr01g0022911 Lupinus albus HOM05D001641 ORTHO05D001667 4.9e-09 64.7 52 65.4
ECA247G1117 Erigeron canadensis HOM05D001641 ORTHO05D001667 8.3e-09 63.9 124 36.3
Oeu015015.2 Olea europaea HOM05D001641 ORTHO05D001667 8.3e-09 63.9 134 38.1
Oeu028729.2 Olea europaea HOM05D001641 ORTHO05D001667 8.3e-09 63.9 136 36.0
Aa31LG3G1600 Aethionema arabicum HOM05D001641 ORTHO05D001667 1.4e-08 63.2 48 68.8
Thhalv10020222m.g Eutrema salsugineum HOM05D001641 ORTHO05D001667 1.4e-08 63.2 47 63.8
THA.LOC104827040 Tarenaya hassleriana HOM05D001641 ORTHO05D001667 1.4e-08 63.2 73 50.7
MSTRG.5598 Avicennia marina HOM05D001641 ORTHO05D001667 1.8e-08 62.8 43 74.4
CAN.G1297.3 Capsicum annuum HOM05D001641 ORTHO05D001667 1.8e-08 62.8 43 74.4
Phvul.008G107800 Phaseolus vulgaris HOM05D001641 ORTHO05D001667 1.8e-08 62.8 109 41.3
Sed0014233 Sechium edule HOM05D001641 ORTHO05D001667 1.8e-08 62.8 126 35.7
Gohir.A01G225200 Gossypium hirsutum HOM05D001641 ORTHO05D001667 3.1e-08 62.0 118 40.7
Gorai.002G261000 Gossypium raimondii HOM05D001641 ORTHO05D001667 3.1e-08 62.0 118 40.7
Lalb_Chr13g0291271 Lupinus albus HOM05D001641 ORTHO05D001667 3.1e-08 62.0 129 38.0
arahy.Tifrunner.gnm1.ann1.JIF81Q Arachis hypogaea HOM05D001641 ORTHO05D001667 4.1e-08 61.6 53 64.2
arahy.Tifrunner.gnm1.ann1.UC3VQR Arachis hypogaea HOM05D001641 ORTHO05D001667 4.1e-08 61.6 53 64.2
Sp3g07520 Schrenkiella parvula HOM05D001641 ORTHO05D001667 4.1e-08 61.6 48 68.8
AL3G20130 Arabidopsis lyrata HOM05D001641 ORTHO05D001667 5.4e-08 61.2 49 59.2
A03p36150 Brassica napus HOM05D001641 ORTHO05D001667 5.4e-08 61.2 110 42.7
CARHR083430 Cardamine hirsuta HOM05D001641 ORTHO05D001667 5.4e-08 61.2 71 53.5
Lj1g0001530 Lotus japonicus HOM05D001641 ORTHO05D001667 5.4e-08 61.2 46 67.4
Sc07g0006840 Simmondsia chinensis HOM05D001641 ORTHO05D001667 7.0e-08 60.8 52 59.6
Actinidia29129 Actinidia chinensis HOM05D001641 ORTHO05D001667 9.2e-08 60.5 48 66.7
Gohir.D01G214800 Gossypium hirsutum HOM05D001641 ORTHO05D001667 9.2e-08 60.5 118 39.8
Actinidia13778 Actinidia chinensis HOM05D001641 ORTHO05D001667 1.2e-07 60.1 137 38.7
TAR633G1677 Trochodendron aralioides HOM05D001641 ORTHO05D001667 1.2e-07 60.1 136 37.5
BcaNung02767 Brassica carinata HOM05D001641 ORTHO05D001667 1.6e-07 59.7 94 45.7
MELO3C009191.2 Cucumis melo HOM05D001641 ORTHO05D001667 1.6e-07 59.7 130 36.2
CsaV3_3G034150 Cucumis sativus L. HOM05D001641 ORTHO05D001667 1.6e-07 59.7 130 36.2
TAR369G0244 Trochodendron aralioides HOM05D001641 ORTHO05D001667 2.7e-07 58.9 135 32.6
Lsat_1_v5_gn_8_99861 Lactuca sativa HOM05D001641 ORTHO05D001667 3.5e-07 58.5 59 55.9
Phvul.010G008500 Phaseolus vulgaris HOM05D001641 ORTHO05D001667 3.5e-07 58.5 135 32.6
SalBow5G3431 Salvia bowleyana HOM05D001641 ORTHO05D001667 3.5e-07 58.5 102 43.1
BcaC09g48051 Brassica carinata HOM05D001641 ORTHO05D001667 4.5e-07 58.2 41 68.3
BolC1t05476H Brassica oleracea HOM05D001641 ORTHO05D001667 4.5e-07 58.2 41 68.3
DCAR_028828 Daucus carota HOM05D001641 ORTHO05D001667 5.9e-07 57.8 127 34.6
unitig_46.g18408 Utricularia gibba HOM05D001641 ORTHO05D001667 5.9e-07 57.8 128 32.8
AL6G11020 Arabidopsis lyrata HOM05D001641 ORTHO05D001667 7.7e-07 57.4 107 43.9
Thhalv10017664m.g Eutrema salsugineum HOM05D001641 ORTHO05D001667 7.7e-07 57.4 42 66.7
HanXRQChr10g0286991 Helianthus annuus HOM05D001641 ORTHO05D001667 7.7e-07 57.4 135 31.9
Lsat_1_v5_gn_9_36081 Lactuca sativa HOM05D001641 ORTHO05D001667 7.7e-07 57.4 119 37.0
C09p74550 Brassica napus HOM05D001641 ORTHO05D001667 1.0e-06 57.0 94 45.7
HanXRQChr15g0464001 Helianthus annuus HOM05D001641 ORTHO05D001667 1.0e-06 57.0 44 61.4
THA.LOC104824521 Tarenaya hassleriana HOM05D001641 ORTHO05D001667 1.0e-06 57.0 126 34.9
BraA01t04318Z Brassica rapa HOM05D001641 ORTHO05D001667 1.3e-06 56.6 44 65.9
Carub.0006s0072 Capsella rubella HOM05D001641 ORTHO05D001667 1.3e-06 56.6 96 44.8
SGA_v2.0_scaffold106G30523 Striga asiatica HOM05D001641 ORTHO05D001667 1.3e-06 56.6 147 37.4
Gohir.D11G347700 Gossypium hirsutum HOM05D001641 ORTHO05D001667 1.7e-06 56.2 44 61.4
VMungo0331G1007 Vigna mungo HOM05D001641 ORTHO05D001667 1.7e-06 56.2 45 57.8
BolC9t60187H Brassica oleracea HOM05D001641 ORTHO05D001667 2.3e-06 55.8 94 43.6
Psat3g130960 Pisum sativum HOM05D001641 ORTHO05D001667 2.3e-06 55.8 51 58.8
Ca_09169_v3 Cicer arietinum L. HOM05D001641 ORTHO05D001667 2.9e-06 55.5 51 58.8
A10p33630 Brassica napus HOM05D001641 ORTHO05D001667 3.8e-06 55.1 94 43.6
BraA10t45394Z Brassica rapa HOM05D001641 ORTHO05D001667 3.8e-06 55.1 94 43.6
Sp6g40530 Schrenkiella parvula HOM05D001641 ORTHO05D001667 3.8e-06 55.1 109 36.7
AT5G01170 Arabidopsis thaliana HOM05D001641 ORTHO05D001667 5.0e-06 54.7 95 43.2
Thhalv10015965m.g Eutrema salsugineum HOM05D001641 ORTHO05D001667 5.0e-06 54.7 107 36.4
SGA_v2.0_scaffold240G44106 Striga asiatica HOM05D001641 ORTHO05D001667 5.0e-06 54.7 111 35.1
ClCG04G007240 Citrullus lanatus HOM05D001641 ORTHO05D001667 8.6e-06 53.9 128 35.2
MELO3C003225.2 Cucumis melo HOM05D001641 ORTHO05D001667 8.6e-06 53.9 128 34.4


User provided reference genes

Program Settings