Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G4150 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.5e-194 682.9 413 100.0
FAN13G0330 Fragaria x ananassa HOM05D005199 ORTHO05D006277 2.9e-190 668.7 413 94.9
FAN04G2629 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.2e-188 663.3 415 97.1
FAN08G3145 Fragaria x ananassa HOM05D005199 ORTHO05D006277 7.9e-188 660.6 414 94.4
RcHm_v2.0_Chr7g0188591 Rosa chinensis HOM05D005199 ORTHO05D006277 1.7e-174 616.3 415 90.6
Prupe.5G140700 Prunus persica HOM05D005199 ORTHO05D006277 3.8e-142 508.8 422 68.5
MD14G1146700 Malus domestica HOM05D005199 ORTHO05D006277 4.2e-141 505.4 419 74.7
MD06G1129500 Malus domestica HOM05D005199 ORTHO05D006277 1.6e-140 503.4 418 65.3
Haze_07093 Corylus avellana HOM05D005199 ORTHO05D006277 1.4e-139 500.4 404 74.0
CiPaw.12G000800 Carya illinoinensis HOM05D005199 ORTHO05D006277 1.5e-138 496.9 415 66.0
Manes.06G127100 Manihot esculenta HOM05D005199 ORTHO05D006277 3.4e-138 495.7 414 72.0
Sabra15G0129500 Salix brachista HOM05D005199 ORTHO05D006277 2.4e-136 489.6 428 62.1
QL10p000401 Quercus lobata HOM05D005199 ORTHO05D006277 3.1e-136 489.2 415 68.2
Cfa018703 Carpinus fangiana HOM05D005199 ORTHO05D006277 5.4e-136 488.4 404 64.9
Sabra15G0127400 Salix brachista HOM05D005199 ORTHO05D006277 5.4e-136 488.4 428 61.9
GSVIVG01008655001 Vitis vinifera HOM05D005199 ORTHO05D006277 9.1e-136 487.6 417 72.2
TWI39G0590 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 1.7e-134 483.4 413 66.8
SalBow7G2845 Salvia bowleyana HOM05D005199 ORTHO05D006277 2.2e-134 483.0 414 74.6
Nn3g16267 Nelumbo nucifera HOM05D005199 ORTHO05D006277 8.5e-134 481.1 410 70.0
Peaxi162Scf00314g00633 Petunia axillaris HOM05D005199 ORTHO05D006277 3.2e-133 479.2 413 75.3
Thecc.03G141200 Theobroma cacao HOM05D005199 ORTHO05D006277 3.2e-133 479.2 407 70.5
Potri.015G106900 Populus trichocarpa HOM05D005199 ORTHO05D006277 9.4e-133 477.6 422 61.4
Ciclev10033942m.g Citrus clementina HOM05D005199 ORTHO05D006277 1.6e-132 476.9 409 64.1
CAN.G843.7 Capsicum annuum HOM05D005199 ORTHO05D006277 2.1e-132 476.5 422 74.4
FAN21G1800 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.4e-131 473.8 409 69.7
Medtr3g098560 Medicago truncatula HOM05D005199 ORTHO05D006277 1.4e-131 473.8 406 69.7
Duzib205G1536 Durio zibethinus HOM05D005199 ORTHO05D006277 1.8e-131 473.4 411 72.0
Sopen03g037080 Solanum pennellii HOM05D005199 ORTHO05D006277 2.3e-131 473.0 417 74.6
CSS0050347 Camellia sinensis var. sinensis HOM05D005199 ORTHO05D006277 4.0e-131 472.2 417 76.5
SGA_v2.0_scaffold37G14675 Striga asiatica HOM05D005199 ORTHO05D006277 8.8e-131 471.1 414 72.9
Manes.14G044200 Manihot esculenta HOM05D005199 ORTHO05D006277 1.5e-130 470.3 404 69.6
Nitab4.5_0000976g0090 Nicotiana tabacum HOM05D005199 ORTHO05D006277 2.6e-130 469.5 423 73.8
Rhsim08G0198200 Rhododendron simsii HOM05D005199 ORTHO05D006277 5.7e-130 468.4 415 68.7
Ca_10877_v3 Cicer arietinum L. HOM05D005199 ORTHO05D006277 9.8e-130 467.6 406 69.5
Atru.chr6.1926 Acer truncatum HOM05D005199 ORTHO05D006277 1.7e-129 466.8 406 71.2
FvH4_3g03530 Fragaria vesca HOM05D005199 ORTHO05D006277 2.2e-129 466.5 408 70.1
FAN11G0489 Fragaria x ananassa HOM05D005199 ORTHO05D006277 2.2e-129 466.5 408 69.4
FAN25G0693 Fragaria x ananassa HOM05D005199 ORTHO05D006277 2.2e-129 466.5 431 69.4
FvH4_3g04170 Fragaria vesca HOM05D005199 ORTHO05D006277 2.8e-129 466.1 417 71.5
Psat5g056040 Pisum sativum HOM05D005199 ORTHO05D006277 2.8e-129 466.1 409 69.4
Migut.I00669 Erythranthe guttata HOM05D005199 ORTHO05D006277 4.9e-129 465.3 416 73.6
Lj1g0022547 Lotus japonicus HOM05D005199 ORTHO05D006277 4.9e-129 465.3 407 72.2
Cc04_g05820 Coffea canephora HOM05D005199 ORTHO05D006277 6.3e-129 464.9 417 62.1
Dinv13715 Davidia involucrata HOM05D005199 ORTHO05D006277 1.4e-128 463.8 404 69.3
FAN11G0779 Fragaria x ananassa HOM05D005199 ORTHO05D006277 1.8e-128 463.4 415 71.3
Nitab4.5_0011600g0020 Nicotiana tabacum HOM05D005199 ORTHO05D006277 5.4e-128 461.8 396 76.5
VMungo1309G0841 Vigna mungo HOM05D005199 ORTHO05D006277 5.4e-128 461.8 413 70.5
HanXRQChr09g0273821 Helianthus annuus HOM05D005199 ORTHO05D006277 9.2e-128 461.1 434 61.1
Hma1.2p1_0577F.1_g182220 Hydrangea macrophylla HOM05D005199 ORTHO05D006277 7.7e-127 458.0 395 72.9
Dinv23231 Davidia involucrata HOM05D005199 ORTHO05D006277 6.6e-126 454.9 414 71.3
Glyma.06G163600 Glycine max HOM05D005199 ORTHO05D006277 3.3e-125 452.6 411 66.4
vmacro19190 Vaccinium macrocarpon HOM05D005199 ORTHO05D006277 3.3e-125 452.6 412 72.8
Oeu013661.1 Olea europaea HOM05D005199 ORTHO05D006277 1.2e-124 450.7 407 67.6
TWI14G0958 Tripterygium wilfordii HOM05D005199 ORTHO05D006277 1.2e-124 450.7 417 66.9
TAR374G0192 Trochodendron aralioides HOM05D005199 ORTHO05D006277 2.8e-124 449.5 394 70.6
Actinidia25514 Actinidia chinensis HOM05D005199 ORTHO05D006277 3.6e-124 449.1 406 69.2
ECA232G4131 Erigeron canadensis HOM05D005199 ORTHO05D006277 3.0e-123 446.0 421 58.2
Gohir.A07G046500 Gossypium hirsutum HOM05D005199 ORTHO05D006277 1.1e-120 437.6 415 65.3
Phvul.009G160900 Phaseolus vulgaris HOM05D005199 ORTHO05D006277 7.0e-120 434.9 411 69.6
Duzib084G1266 Durio zibethinus HOM05D005199 ORTHO05D006277 5.9e-119 431.8 407 65.4
Cpa.g.sc13.181 Carica papaya HOM05D005199 ORTHO05D006277 1.9e-117 426.8 415 57.3
SHI14097 Sapria himalayana HOM05D005199 ORTHO05D006277 1.9e-117 426.8 458 52.2
arahy.Tifrunner.gnm1.ann1.4TKD14 Arachis hypogaea HOM05D005199 ORTHO05D006277 7.3e-117 424.9 415 66.7
CDE02G3820 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 2.3e-115 419.9 422 54.0
FvH4_5g09660 Fragaria vesca HOM05D005199 ORTHO05D006277 2.3e-115 419.9 289 99.0
Gohir.D07G050800 Gossypium hirsutum HOM05D005199 ORTHO05D006277 2.3e-115 419.9 416 65.1
Gorai.001G053900 Gossypium raimondii HOM05D005199 ORTHO05D006277 2.3e-115 419.9 416 68.5
CDE06G1181 Ceratophyllum demersum HOM05D005199 ORTHO05D006277 8.9e-115 417.9 409 54.8
COL.COLO4_37264 Corchorus olitorius HOM05D005199 ORTHO05D006277 3.4e-114 416.0 378 70.9
DCAR_025645 Daucus carota HOM05D005199 ORTHO05D006277 4.9e-113 412.1 406 62.3
arahy.Tifrunner.gnm1.ann1.P6GRAY Arachis hypogaea HOM05D005199 ORTHO05D006277 8.3e-113 411.4 410 62.2
MELO3C026157.2 Cucumis melo HOM05D005199 ORTHO05D006277 1.9e-112 410.2 408 64.7
Aa31LG11G1640 Aethionema arabicum HOM05D005199 ORTHO05D006277 4.1e-112 409.1 411 61.1
BcaC01g02441 Brassica carinata HOM05D005199 ORTHO05D006277 4.1e-112 409.1 421 58.0
CsaV3_1G000050 Cucumis sativus L. HOM05D005199 ORTHO05D006277 2.0e-111 406.8 408 65.0
PGR102G3000 Punica granatum HOM05D005199 ORTHO05D006277 7.8e-111 404.8 394 65.0
DCAR_016338 Daucus carota HOM05D005199 ORTHO05D006277 1.0e-110 404.4 420 54.5
C03p65260 Brassica napus HOM05D005199 ORTHO05D006277 2.3e-110 403.3 425 57.4
BolC3t18779H Brassica oleracea HOM05D005199 ORTHO05D006277 2.3e-110 403.3 425 57.4
THA.LOC104801769 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 3.0e-110 402.9 432 57.4
THA.LOC104818285 Tarenaya hassleriana HOM05D005199 ORTHO05D006277 3.0e-110 402.9 421 62.2
A06p28520 Brassica napus HOM05D005199 ORTHO05D006277 3.9e-110 402.5 418 58.9
BraA06t25798Z Brassica rapa HOM05D005199 ORTHO05D006277 3.9e-110 402.5 418 58.9
Lsat_1_v5_gn_4_84380 Lactuca sativa HOM05D005199 ORTHO05D006277 3.9e-110 402.5 420 56.9
ClCG06G018380 Citrullus lanatus HOM05D005199 ORTHO05D006277 5.0e-110 402.1 361 73.4
Thhalv10005606m.g Eutrema salsugineum HOM05D005199 ORTHO05D006277 2.5e-109 399.8 413 65.1
BcaB02g09607 Brassica carinata HOM05D005199 ORTHO05D006277 4.3e-109 399.1 414 60.9
Lj9A487G53 Lonicera japonica HOM05D005199 ORTHO05D006277 4.3e-109 399.1 380 57.6
BcaB07g29818 Brassica carinata HOM05D005199 ORTHO05D006277 5.6e-109 398.7 415 62.7
Carub.0008s2255 Capsella rubella HOM05D005199 ORTHO05D006277 1.2e-108 397.5 416 63.5
Sp2g25050 Schrenkiella parvula HOM05D005199 ORTHO05D006277 3.6e-108 396.0 417 55.9
CARHR275620 Cardamine hirsuta HOM05D005199 ORTHO05D006277 4.7e-108 395.6 413 65.6
A02p41740 Brassica napus HOM05D005199 ORTHO05D006277 1.1e-107 394.4 416 66.1
C02p61660 Brassica napus HOM05D005199 ORTHO05D006277 4.0e-107 392.5 417 65.7
BcaC03g18101 Brassica carinata HOM05D005199 ORTHO05D006277 6.8e-107 391.7 417 65.7
MBI10_g44970_MAGBIO Magnolia biondii HOM05D005199 ORTHO05D006277 1.2e-106 391.0 354 70.3
AT5G61850 Arabidopsis thaliana HOM05D005199 ORTHO05D006277 3.4e-106 389.4 417 56.8
Eucgr.K02192 Eucalyptus grandis HOM05D005199 ORTHO05D006277 4.4e-106 389.0 362 57.5
BraA02t09114Z Brassica rapa HOM05D005199 ORTHO05D006277 5.8e-106 388.7 420 65.5
EL10Ac5g11279 Beta vulgaris HOM05D005199 ORTHO05D006277 7.5e-106 388.3 403 53.8
AL8G38620 Arabidopsis lyrata HOM05D005199 ORTHO05D006277 9.8e-106 387.9 417 65.0
BolC2t12224H Brassica oleracea HOM05D005199 ORTHO05D006277 3.7e-105 386.0 421 65.1
unitig_0.g1099 Utricularia gibba HOM05D005199 ORTHO05D006277 4.1e-104 382.5 317 64.4
AUR62032216 Chenopodium quinoa HOM05D005199 ORTHO05D006277 2.7e-103 379.8 364 56.9
unitig_61.g26224 Utricularia gibba HOM05D005199 ORTHO05D006277 3.5e-103 379.4 299 73.6
Aqoxy5G03105 Aquilegia oxysepala HOM05D005199 ORTHO05D006277 4.6e-103 379.0 418 56.9
PSO478G1920 Papaver somniferum HOM05D005199 ORTHO05D006277 4.6e-103 379.0 351 67.2
Sc22g0003300 Simmondsia chinensis HOM05D005199 ORTHO05D006277 3.9e-102 375.9 453 57.4
Sed0007314 Sechium edule HOM05D005199 ORTHO05D006277 7.3e-101 371.7 349 60.2
TPR.G25958 Trifolium pratense HOM05D005199 ORTHO05D006277 3.1e-99 366.3 348 63.5
arahy.Tifrunner.gnm1.ann1.33WSUR Arachis hypogaea HOM05D005199 ORTHO05D006277 4.0e-99 365.9 399 50.9
Ah.02g114560 Amaranthus hybridus HOM05D005199 ORTHO05D006277 9.9e-98 361.3 367 57.5
arahy.Tifrunner.gnm1.ann1.31D2RV Arachis hypogaea HOM05D005199 ORTHO05D006277 4.1e-96 355.9 394 49.7
ATR0582G251 Amborella trichopoda HOM05D005199 ORTHO05D006277 4.6e-95 352.4 407 55.0
SGA_v2.0_scaffold168G38552 Striga asiatica HOM05D005199 ORTHO05D006277 9.6e-93 344.7 349 53.0
Zm00001eb430240 Zea mays HOM05D005199 ORTHO05D006277 2.9e-89 333.2 405 53.1
Os04g0598300 Oryza sativa ssp. japonica HOM05D005199 ORTHO05D006277 2.4e-88 330.1 353 64.0
SEGI_03714 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 7.8e-87 325.1 387 45.0
Mapoly0113s0034 Marchantia polymorpha HOM05D005199 ORTHO05D006277 4.0e-83 312.8 347 47.8
AUR62044212 Chenopodium quinoa HOM05D005199 ORTHO05D006277 1.2e-79 301.2 439 43.1
SEGI_00497 Sequoiadendron giganteum HOM05D005199 ORTHO05D006277 1.3e-78 297.7 329 47.1
Zm00001eb071990 Zea mays HOM05D005199 ORTHO05D006277 3.0e-78 296.6 334 53.3
AUR62043310 Chenopodium quinoa HOM05D005199 ORTHO05D006277 1.5e-77 294.3 359 48.5
Migut.D01179 Erythranthe guttata HOM05D005199 ORTHO05D006277 3.3e-77 293.1 161 82.6
Lalb_Chr11g0069151 Lupinus albus HOM05D005199 ORTHO05D006277 2.1e-76 290.4 175 76.6
Pp3c3_11670 Physcomitrium patens HOM05D005199 ORTHO05D006277 1.1e-75 288.1 339 45.4
Pp3c13_8760 Physcomitrium patens HOM05D005199 ORTHO05D006277 1.4e-72 277.7 318 46.2
HPP92_021614 Vanilla planifolia HOM05D005199 ORTHO05D006277 2.1e-71 273.9 362 58.6
Lalb_Chr07g0183841 Lupinus albus HOM05D005199 ORTHO05D006277 5.5e-64 249.2 308 57.8
Lalb_Chr12g0202561 Lupinus albus HOM05D005199 ORTHO05D006277 6.0e-63 245.7 298 60.1
Glyma.04G202002 Glycine max HOM05D005199 ORTHO05D006277 2.0e-58 230.7 131 81.7
FAN25G1078 Fragaria x ananassa HOM05D005199 ORTHO05D006277 4.2e-56 223.0 255 66.7
Sabra15G0071900 Salix brachista HOM05D005199 ORTHO05D006277 8.7e-54 215.3 290 47.2
PGSC0003DMG400014174 Solanum tuberosum HOM05D005199 ORTHO05D006277 1.4e-51 208.0 124 75.8
Actinidia18295 Actinidia chinensis HOM05D005199 ORTHO05D006277 3.2e-48 196.8 165 65.5
Lalb_Chr07g0183831 Lupinus albus HOM05D005199 ORTHO05D006277 9.4e-48 195.3 113 78.8
SMO347G0183 Selaginella moellendorffii HOM05D005199 ORTHO05D006277 1.1e-43 181.8 113 69.9
CBR_g60061 Chara braunii HOM05D005199 ORTHO05D006277 2.0e-42 177.6 332 34.0
Lalb_Chr12g0202551 Lupinus albus HOM05D005199 ORTHO05D006277 8.8e-38 162.2 91 81.3
Lalb_Chr11g0069141 Lupinus albus HOM05D005199 ORTHO05D006277 4.5e-34 149.8 157 54.1
AagrBONN_evm.TU.Sc2ySwM_228.2166 Anthoceros agrestis HOM05D005199 ORTHO05D006277 1.7e-33 147.9 282 35.8
CANSAT11G1658 Cannabis sativa HOM05D005199 ORTHO05D006277 1.8e-22 111.3 76 72.4
SMO347G0146 Selaginella moellendorffii HOM05D005199 ORTHO05D006277 1.1e-16 92.0 83 51.8
CDE05G0289 Ceratophyllum demersum HOM05D000263 ORTHO05D000213 9.8e-13 79.0 39 87.2


User provided reference genes

Program Settings