Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G4146 Fragaria x ananassa HOM05D003594 ORTHO05D004268 0.0e+00 1622.8 834 100.0
FAN18G3192 Fragaria x ananassa HOM05D003594 ORTHO05D004268 0.0e+00 1611.3 834 99.4
FvH4_5g22640 Fragaria vesca HOM05D003594 ORTHO05D004268 0.0e+00 1595.1 834 98.9
FAN04G1757 Fragaria x ananassa HOM05D003594 ORTHO05D004268 0.0e+00 1488.4 834 93.2
FAN08G1578 Fragaria x ananassa HOM05D003594 ORTHO05D004268 0.0e+00 1427.5 829 90.1
RcHm_v2.0_Chr7g0211051 Rosa chinensis HOM05D003594 ORTHO05D004268 0.0e+00 1332.8 833 83.2
Prupe.3G003400 Prunus persica HOM05D003594 ORTHO05D004268 1.1e-286 989.9 872 62.2
MD17G1284000 Malus domestica HOM05D003594 ORTHO05D004268 5.7e-270 934.5 884 60.0
CiPaw.13G039500 Carya illinoinensis HOM05D003594 ORTHO05D004268 1.2e-243 847.0 819 57.4
Cfa011279 Carpinus fangiana HOM05D003594 ORTHO05D004268 1.0e-239 833.9 805 58.1
Dinv11846 Davidia involucrata HOM05D003594 ORTHO05D004268 4.1e-236 822.0 877 53.7
QL04p046058 Quercus lobata HOM05D003594 ORTHO05D004268 1.5e-233 813.5 873 52.6
TAR622G0410 Trochodendron aralioides HOM05D003594 ORTHO05D004268 2.4e-228 796.2 728 59.2
CANSAT56G3624 Cannabis sativa HOM05D003594 ORTHO05D004268 3.3e-225 785.8 858 52.9
CSS0031708 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 8.9e-223 777.7 854 52.2
CSS0019720 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 1.2e-222 777.3 860 52.3
Nn4g23115 Nelumbo nucifera HOM05D003594 ORTHO05D004268 5.6e-217 758.4 901 50.1
Manes.11G108901 Manihot esculenta HOM05D003594 ORTHO05D004268 2.1e-216 756.5 790 52.7
Lj3C928G2 Lonicera japonica HOM05D003594 ORTHO05D004268 4.0e-215 752.3 848 50.5
Actinidia06697 Actinidia chinensis HOM05D003594 ORTHO05D004268 1.1e-212 744.2 878 50.8
PSO478G3548 Papaver somniferum HOM05D003594 ORTHO05D004268 3.3e-209 732.6 760 53.4
Potri.010G238000 Populus trichocarpa HOM05D003594 ORTHO05D004268 1.1e-207 727.6 876 48.9
TWI38G1480 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 1.4e-207 727.2 820 50.6
PSO017G2985 Papaver somniferum HOM05D003594 ORTHO05D004268 7.6e-206 721.5 758 53.6
Sabra10G0186200 Salix brachista HOM05D003594 ORTHO05D004268 4.9e-205 718.8 871 48.6
Glyma.07G058700 Glycine max HOM05D003594 ORTHO05D004268 1.9e-204 716.8 799 50.9
Glyma.16G027600 Glycine max HOM05D003594 ORTHO05D004268 7.1e-204 714.9 809 51.5
Gohir.A06G169100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 9.3e-204 714.5 849 48.3
Rhsim03G0098900 Rhododendron simsii HOM05D003594 ORTHO05D004268 1.7e-202 710.3 890 47.6
Thecc.10G111800 Theobroma cacao HOM05D003594 ORTHO05D004268 3.9e-202 709.1 885 48.7
Duzib052G0830 Durio zibethinus HOM05D003594 ORTHO05D004268 8.1e-200 701.4 720 53.9
Lalb_Chr10g0100231 Lupinus albus HOM05D003594 ORTHO05D004268 3.1e-199 699.5 861 48.3
Ciclev10027803m.g Citrus clementina HOM05D003594 ORTHO05D004268 5.3e-199 698.7 860 48.0
Gorai.010G208000 Gossypium raimondii HOM05D003594 ORTHO05D004268 4.5e-198 695.7 859 47.6
Gohir.D06G176700 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.7e-197 693.7 708 52.8
Cc02_g29780 Coffea canephora HOM05D003594 ORTHO05D004268 9.3e-196 688.0 880 46.9
VMungo0331G0994 Vigna mungo HOM05D003594 ORTHO05D004268 2.7e-195 686.4 779 50.2
ClCG09G007450 Citrullus lanatus HOM05D003594 ORTHO05D004268 8.7e-194 681.4 841 48.4
Lsat_1_v5_gn_2_104580 Lactuca sativa HOM05D003594 ORTHO05D004268 3.3e-193 679.5 835 47.1
COL.COLO4_28858 Corchorus olitorius HOM05D003594 ORTHO05D004268 4.3e-193 679.1 883 47.6
GSVIVG01032568001 Vitis vinifera HOM05D003594 ORTHO05D004268 3.7e-192 676.0 747 52.5
Solyc11g007010.2 Solanum lycopersicum HOM05D003594 ORTHO05D004268 1.1e-191 674.5 859 45.3
Sopen11g002930 Solanum pennellii HOM05D003594 ORTHO05D004268 1.8e-191 673.7 859 45.5
Ca_23589_v3 Cicer arietinum L. HOM05D003594 ORTHO05D004268 2.6e-190 669.8 884 45.4
DCAR_006339 Daucus carota HOM05D003594 ORTHO05D004268 1.3e-189 667.5 871 45.6
Medtr3g075460 Medicago truncatula HOM05D003594 ORTHO05D004268 2.9e-189 666.4 878 46.1
Aqoxy3G00687_Aqoxy3G00688 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 8.4e-189 664.8 743 51.8
Peaxi162Scf00173g00417 Petunia axillaris HOM05D003594 ORTHO05D004268 1.1e-188 664.5 726 48.8
ECA238G3867 Erigeron canadensis HOM05D003594 ORTHO05D004268 3.2e-188 662.9 852 45.9
Lj3g0004598 Lotus japonicus HOM05D003594 ORTHO05D004268 4.2e-188 662.5 872 46.0
Sed0011677 Sechium edule HOM05D003594 ORTHO05D004268 1.3e-186 657.5 830 47.6
Phvul.010G110700 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 9.6e-185 651.4 904 45.5
Sed0007749 Sechium edule HOM05D003594 ORTHO05D004268 2.1e-184 650.2 833 46.7
THA.LOC104820658 Tarenaya hassleriana HOM05D003594 ORTHO05D004268 3.7e-184 649.4 838 46.1
Nitab4.5_0005622g0060 Nicotiana tabacum HOM05D003594 ORTHO05D004268 8.2e-184 648.3 895 43.2
PGSC0003DMG400023977 Solanum tuberosum HOM05D003594 ORTHO05D004268 1.8e-183 647.1 787 46.1
Medtr8g028030 Medicago truncatula HOM05D003594 ORTHO05D004268 5.3e-183 645.6 882 44.6
Nitab4.5_0001437g0090 Nicotiana tabacum HOM05D003594 ORTHO05D004268 4.5e-182 642.5 891 43.7
Carub.0001s2847 Capsella rubella HOM05D003594 ORTHO05D004268 5.0e-181 639.0 850 45.5
Sc06g0002330 Simmondsia chinensis HOM05D003594 ORTHO05D004268 4.2e-180 636.0 853 43.6
ClCG05G018390 Citrullus lanatus HOM05D003594 ORTHO05D004268 1.2e-179 634.4 892 45.1
Migut.F00912 Erythranthe guttata HOM05D003594 ORTHO05D004268 1.6e-179 634.0 844 44.8
arahy.Tifrunner.gnm1.ann1.8EA83L Arachis hypogaea HOM05D003594 ORTHO05D004268 1.5e-177 627.5 899 43.9
Lj1g0028024 Lotus japonicus HOM05D003594 ORTHO05D004268 3.3e-177 626.3 850 46.8
Ah.04g162260 Amaranthus hybridus HOM05D003594 ORTHO05D004268 4.3e-177 625.9 877 42.9
Psat4g159240 Pisum sativum HOM05D003594 ORTHO05D004268 4.3e-177 625.9 676 51.5
Thhalv10006813m.g Eutrema salsugineum HOM05D003594 ORTHO05D004268 3.7e-176 622.9 831 45.0
Eucgr.J00989 Eucalyptus grandis HOM05D003594 ORTHO05D004268 6.3e-176 622.1 805 47.3
Cc02_g09740 Coffea canephora HOM05D003594 ORTHO05D004268 1.4e-175 620.9 651 53.5
ATR0737G134 Amborella trichopoda HOM05D003594 ORTHO05D004268 1.8e-175 620.5 766 47.0
HanXRQChr11g0342181 Helianthus annuus HOM05D003594 ORTHO05D004268 5.9e-174 615.5 836 43.7
MBI02_g14487_MAGBIO Magnolia biondii HOM05D003594 ORTHO05D004268 1.7e-173 614.0 894 45.1
Oeu025587.1 Olea europaea HOM05D003594 ORTHO05D004268 5.0e-173 612.5 932 42.4
TPR.G8757 Trifolium pratense HOM05D003594 ORTHO05D004268 1.5e-169 600.9 618 53.2
A09p36300 Brassica napus HOM05D003594 ORTHO05D004268 6.3e-168 595.5 855 42.2
CARHR029630 Cardamine hirsuta HOM05D003594 ORTHO05D004268 4.1e-167 592.8 725 46.6
BraA09t39154Z Brassica rapa HOM05D003594 ORTHO05D004268 1.2e-166 591.3 851 42.0
MELO3C012354.2 Cucumis melo HOM05D003594 ORTHO05D004268 2.6e-166 590.1 775 46.2
AT1G30240 Arabidopsis thaliana HOM05D003594 ORTHO05D004268 3.4e-166 589.7 852 43.3
BcaC05g27050 Brassica carinata HOM05D003594 ORTHO05D004268 1.3e-165 587.8 852 41.8
BolC5t31639H Brassica oleracea HOM05D003594 ORTHO05D004268 1.3e-165 587.8 852 41.8
C05p29080 Brassica napus HOM05D003594 ORTHO05D004268 1.7e-165 587.4 852 41.8
Nn3g17199 Nelumbo nucifera HOM05D003594 ORTHO05D004268 1.7e-165 587.4 536 58.6
AL1G44160 Arabidopsis lyrata HOM05D003594 ORTHO05D004268 2.9e-165 586.6 776 46.0
BolC3t19907H Brassica oleracea HOM05D003594 ORTHO05D004268 5.0e-165 585.9 646 49.4
Aa31sc91G80 Aethionema arabicum HOM05D003594 ORTHO05D004268 6.5e-165 585.5 845 43.2
Sp1g26080 Schrenkiella parvula HOM05D003594 ORTHO05D004268 8.5e-165 585.1 852 42.4
BcaC01g00173 Brassica carinata HOM05D003594 ORTHO05D004268 1.1e-164 584.7 646 49.4
BcaB03g12203 Brassica carinata HOM05D003594 ORTHO05D004268 1.4e-164 584.3 646 49.5
C03p76500 Brassica napus HOM05D003594 ORTHO05D004268 1.9e-164 583.9 646 49.2
HPP92_013069 Vanilla planifolia HOM05D003594 ORTHO05D004268 1.6e-163 580.9 767 43.9
SalBow6G4638 Salvia bowleyana HOM05D003594 ORTHO05D004268 6.1e-163 578.9 726 45.0
PGR044G2128 Punica granatum HOM05D003594 ORTHO05D004268 1.0e-162 578.2 650 49.4
MD09G1289100 Malus domestica HOM05D003594 ORTHO05D004268 1.8e-162 577.4 546 59.9
BcaB07g32622 Brassica carinata HOM05D003594 ORTHO05D004268 8.8e-162 575.1 836 42.2
Cpa.g.sc183.16 Carica papaya HOM05D003594 ORTHO05D004268 2.0e-161 573.9 713 49.2
Dinv06533 Davidia involucrata HOM05D003594 ORTHO05D004268 2.8e-160 570.1 806 44.4
arahy.Tifrunner.gnm1.ann1.Q3AX4Y Arachis hypogaea HOM05D003594 ORTHO05D004268 3.1e-159 566.6 952 39.9
A08p24610 Brassica napus HOM05D003594 ORTHO05D004268 5.3e-159 565.8 839 41.4
CDE09G0981 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 8.0e-155 552.0 891 42.8
EL10Ac4g08659 Beta vulgaris HOM05D003594 ORTHO05D004268 7.5e-153 545.4 864 40.9
AUR62042073 Chenopodium quinoa HOM05D003594 ORTHO05D004268 1.5e-148 531.2 739 43.3
BraA08t34416Z Brassica rapa HOM05D003594 ORTHO05D004268 5.2e-146 522.7 605 48.1
SGA_v2.0_scaffold295G47526 Striga asiatica HOM05D003594 ORTHO05D004268 2.0e-145 520.8 833 38.9
CAN.G645.3 Capsicum annuum HOM05D003594 ORTHO05D004268 2.9e-141 506.9 689 45.4
Os05g0295900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 2.7e-139 500.4 776 41.8
AUR62043305 Chenopodium quinoa HOM05D003594 ORTHO05D004268 4.5e-134 483.0 725 41.4
CsaV3_5G035440 Cucumis sativus L. HOM05D003594 ORTHO05D004268 2.1e-131 474.2 597 47.1
CsaV3_5G035480 Cucumis sativus L. HOM05D003594 ORTHO05D004268 2.1e-131 474.2 597 47.1
Gohir.D09G017550 Gossypium hirsutum HOM05D003594 ORTHO05D004268 2.9e-128 463.8 670 41.8
Gorai.006G020600 Gossypium raimondii HOM05D003594 ORTHO05D004268 4.1e-127 459.9 669 41.7
Mapoly0108s0040 Marchantia polymorpha HOM05D003594 ORTHO05D004268 3.4e-121 440.3 666 40.2
CsaV3_5G035460 Cucumis sativus L. HOM05D003594 ORTHO05D004268 9.5e-116 422.2 444 52.5
Atru.chr12.1013 Acer truncatum HOM05D003594 ORTHO05D004268 2.8e-115 420.6 616 42.7
Pp3c8_9490 Physcomitrium patens HOM05D003594 ORTHO05D004268 3.1e-114 417.2 685 38.8
MD09G1292100 Malus domestica HOM05D003594 ORTHO05D004268 2.6e-113 414.1 507 51.3
Cc02_g29810 Coffea canephora HOM05D003594 ORTHO05D004268 1.4e-111 408.3 711 38.7
Cc02_g09730 Coffea canephora HOM05D003594 ORTHO05D004268 5.4e-111 406.4 354 59.3
Phvul.003G001400 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 9.2e-111 405.6 558 48.0
Zm00001eb231330 Zea mays HOM05D003594 ORTHO05D004268 5.4e-103 379.8 672 39.3
Actinidia18596 Actinidia chinensis HOM05D003594 ORTHO05D004268 1.1e-100 372.1 453 48.1
SMO364G0406 Selaginella moellendorffii HOM05D003594 ORTHO05D004268 4.7e-99 366.7 708 35.5
Pp3c15_8100 Physcomitrium patens HOM05D003594 ORTHO05D004268 5.8e-97 359.8 687 35.8
Pp3c15_8103 Physcomitrium patens HOM05D003594 ORTHO05D004268 5.8e-97 359.8 687 35.8
Hund22286 Selenicereus undatus HOM05D003594 ORTHO05D004268 1.7e-93 348.2 636 38.8
Hund23993 Selenicereus undatus HOM05D003594 ORTHO05D004268 4.3e-92 343.6 636 38.8
Hma1.2p1_0145F.1_g065330 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 3.1e-90 337.4 338 56.5
Haze_02500 Corylus avellana HOM05D003594 ORTHO05D004268 8.4e-88 329.3 248 65.3
TWI63G1716 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 1.3e-83 315.5 272 55.9
CBR_g29875 Chara braunii HOM05D003594 ORTHO05D000497 6.2e-83 313.2 797 33.4
CBR_g45421 Chara braunii HOM05D003594 ORTHO05D004268 1.3e-77 295.4 824 32.0
CsaV3_5G035510 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.3e-67 262.3 224 59.4
Aqoxy2G02949 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 1.2e-62 245.7 803 30.5
GSVIVG01011385001 Vitis vinifera HOM05D003594 ORTHO05D004268 1.6e-62 245.4 467 38.8
Gohir.A09G018100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 3.9e-61 240.7 448 36.6
Os06g0343900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 2.2e-59 235.0 333 40.8
Haze_02506 Corylus avellana HOM05D003594 ORTHO05D004268 5.1e-53 213.8 258 50.0
Atru.chr12.1014 Acer truncatum HOM05D003594 ORTHO05D004268 1.1e-47 196.1 142 66.9
SEGI_27789 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 5.5e-47 193.7 195 54.4
MSTRG.27538 Avicennia marina HOM05D003594 ORTHO05D004268 1.3e-43 182.6 141 58.9
CsaV3_5G035420 Cucumis sativus L. HOM05D003594 ORTHO05D004268 3.1e-42 177.9 155 58.1
Psat6g218640 Pisum sativum HOM05D001312 ORTHO05D001832 5.0e-40 170.6 340 37.6
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 1.1e-39 169.5 232 44.8
MSTRG.27536 Avicennia marina HOM05D003594 ORTHO05D004268 8.0e-38 163.3 271 38.7
AagrBONN_evm.TU.Sc2ySwM_228.2673 Anthoceros agrestis HOM05D003594 ORTHO05D004268 2.3e-37 161.8 343 35.6
Gohir.A09G018150 Gossypium hirsutum HOM05D003594 ORTHO05D004268 2.3e-37 161.8 194 46.9
MD09G1289200 Malus domestica HOM05D003594 ORTHO05D004268 2.3e-37 161.8 121 63.6
ATR0564G271 Amborella trichopoda HOM05D003594 ORTHO05D004268 6.7e-37 160.2 452 31.2
SHI24306 Sapria himalayana HOM05D003594 ORTHO05D004268 1.7e-35 155.6 237 40.5
Nn3g17196 Nelumbo nucifera HOM05D003594 ORTHO05D004268 1.1e-34 152.9 274 39.1
MSTRG.11586 Avicennia marina HOM05D003594 ORTHO05D004268 4.1e-34 151.0 119 57.1
Cc02_g29830 Coffea canephora HOM05D003594 ORTHO05D004268 4.1e-34 151.0 139 57.6
Hma1.2p1_2419F.1_g321820 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 7.7e-33 146.7 116 59.5
Hund22291 Selenicereus undatus HOM05D003594 ORTHO05D004268 1.7e-32 145.6 252 39.7
SEGI_05252 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 3.8e-32 144.4 252 40.1
BcaB08g34816 Brassica carinata HOM05D002573 ORTHO05D002918 2.6e-28 131.7 146 46.6
A02p30260 Brassica napus HOM05D003594 ORTHO05D004268 3.4e-28 131.3 101 58.4
A03p57890 Brassica napus HOM05D003594 ORTHO05D004268 3.4e-28 131.3 101 58.4
Prupe.6G159300 Prunus persica HOM05D003594 ORTHO05D004268 2.2e-27 128.6 185 42.2
SHI24302 Sapria himalayana HOM05D003594 ORTHO05D004268 1.2e-25 122.9 134 49.3
C02p37120 Brassica napus HOM05D003594 ORTHO05D004268 2.7e-25 121.7 113 51.3
CsaV3_5G035520 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.3e-24 119.4 181 42.0
AagrBONN_evm.TU.Sc2ySwM_228.2672 Anthoceros agrestis HOM05D003594 ORTHO05D004268 1.4e-21 109.4 125 47.2
Actinidia36695 Actinidia chinensis HOM05D003594 ORTHO05D004268 5.7e-20 104.0 284 35.6
BolC5t29265H Brassica oleracea HOM05D003594 ORTHO05D004268 7.5e-20 103.6 80 56.2
C03p91380 Brassica napus HOM05D003594 ORTHO05D004268 1.1e-18 99.8 80 55.0
BolC3t21454H Brassica oleracea HOM05D003594 ORTHO05D004268 1.1e-18 99.8 80 55.0
BolC7t45516H Brassica oleracea HOM05D003594 ORTHO05D004268 7.0e-18 97.1 80 53.8
C03p15410 Brassica napus HOM05D003594 ORTHO05D004268 9.2e-18 96.7 87 49.4
Haze_25332 Corylus avellana HOM05D003594 ORTHO05D004268 3.8e-16 91.3 89 51.7
Haze_02499 Corylus avellana HOM05D003594 ORTHO05D004268 8.6e-16 90.1 89 50.6
Hma1.2p1_0053F.1_g030920 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 1.1e-15 89.7 75 62.7
SHI24307 Sapria himalayana HOM05D003594 ORTHO05D004268 1.9e-15 89.0 175 39.4
BraA03t14853Z Brassica rapa HOM05D003594 ORTHO05D004268 4.3e-15 87.8 70 55.7
C03p54150 Brassica napus HOM05D003594 ORTHO05D004268 9.5e-15 86.7 70 54.3
Actinidia36694 Actinidia chinensis HOM05D003594 ORTHO05D004268 6.8e-13 80.5 60 63.3
CAN.G645.4 Capsicum annuum HOM05D003594 ORTHO05D004268 1.3e-11 76.3 88 45.5
CDE02G4417 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 1.6e-09 69.3 265 29.8
Psat6g091000 Pisum sativum HOM05D003335 ORTHO05D003853 2.0e-09 68.9 62 56.5
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 2.0e-09 68.9 64 51.6
SHI24305 Sapria himalayana HOM05D000023 ORTHO05D000014 5.9e-09 67.4 56 58.9
TPR.G23930 Trifolium pratense HOM05D003594 ORTHO05D004268 3.9e-08 64.7 259 27.8
Glyma.14G085550 Glycine max HOM05D003594 ORTHO05D004268 5.0e-08 64.3 55 50.9
Ciclev10030203m.g Citrus clementina HOM05D003594 ORTHO05D026973 3.3e-07 61.6 115 41.7
Haze_02504 Corylus avellana HOM05D003594 ORTHO05D026973 4.7e-06 57.8 97 48.5
TPR.G23814 Trifolium pratense HOM05D003594 ORTHO05D411989 4.7e-06 57.8 66 40.9


User provided reference genes

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