Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G4123 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.4e-37 159.1 76 100.0
FvH4_5g38790 Fragaria vesca HOM05D003756 ORTHO05D004304 5.4e-34 147.1 76 96.1
CANSAT80G0977 Cannabis sativa HOM05D003756 ORTHO05D004304 5.6e-31 137.1 76 88.2
FvH4_6g18660 Fragaria vesca HOM05D003756 ORTHO05D004304 1.2e-30 136.0 75 89.3
FAN02G3109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.2e-30 136.0 75 89.3
FAN14G1823 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.2e-30 136.0 75 89.3
FAN04G2492 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.6e-30 135.6 72 91.7
Prupe.7G110400 Prunus persica HOM05D003756 ORTHO05D004304 2.1e-30 135.2 76 88.2
FAN05G1127 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.6e-30 134.4 75 88.0
FAN05G3155 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.6e-30 134.4 75 88.0
FAN09G2235 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.6e-30 134.4 75 88.0
MD15G1359000 Malus domestica HOM05D003756 ORTHO05D004304 4.7e-30 134.0 76 86.8
Eucgr.K02043 Eucalyptus grandis HOM05D003756 ORTHO05D004304 2.3e-29 131.7 76 84.2
ClCG04G010070 Citrullus lanatus HOM05D003756 ORTHO05D004304 3.1e-29 131.3 76 85.5
Prupe.1G506800 Prunus persica HOM05D003756 ORTHO05D004304 3.1e-29 131.3 76 85.5
MD12G1036000 Malus domestica HOM05D003756 ORTHO05D004304 5.2e-29 130.6 76 86.8
MD14G1022700 Malus domestica HOM05D003756 ORTHO05D004304 6.8e-29 130.2 76 86.8
RcHm_v2.0_Chr7g0240771 Rosa chinensis HOM05D003756 ORTHO05D004304 6.8e-29 130.2 76 82.9
ClCG10G018980 Citrullus lanatus HOM05D003756 ORTHO05D004304 8.9e-29 129.8 76 84.2
Gohir.A09G139300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 8.9e-29 129.8 71 91.5
Gohir.D09G135300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 8.9e-29 129.8 71 91.5
Gorai.006G155200 Gossypium raimondii HOM05D003756 ORTHO05D004304 8.9e-29 129.8 71 91.5
Sed0014276 Sechium edule HOM05D003756 ORTHO05D004304 8.9e-29 129.8 76 84.2
Potri.009G149300 Populus trichocarpa HOM05D003756 ORTHO05D004304 1.2e-28 129.4 76 78.9
RcHm_v2.0_Chr3g0473621 Rosa chinensis HOM05D003756 ORTHO05D004304 1.2e-28 129.4 76 84.2
Thecc.05G088800 Theobroma cacao HOM05D003756 ORTHO05D004304 1.5e-28 129.0 74 86.5
Ah.15g090880 Amaranthus hybridus HOM05D003756 ORTHO05D004304 2.6e-28 128.3 76 81.6
Gohir.D01G127900 Gossypium hirsutum HOM05D003756 ORTHO05D004304 2.6e-28 128.3 71 90.1
Gorai.002G158500 Gossypium raimondii HOM05D003756 ORTHO05D004304 2.6e-28 128.3 71 90.1
Lj6g0015332 Lotus japonicus HOM05D003756 ORTHO05D004304 3.4e-28 127.9 76 82.9
MELO3C024548.2 Cucumis melo HOM05D003756 ORTHO05D004304 4.4e-28 127.5 76 82.9
Duzib106G1642 Durio zibethinus HOM05D003756 ORTHO05D004304 4.4e-28 127.5 73 86.3
Duzib128G1348 Durio zibethinus HOM05D003756 ORTHO05D004304 4.4e-28 127.5 74 85.1
Gohir.A01G206400 Gossypium hirsutum HOM05D003756 ORTHO05D004304 4.4e-28 127.5 76 85.5
Gorai.002G240000 Gossypium raimondii HOM05D003756 ORTHO05D004304 4.4e-28 127.5 76 85.5
Sed0019143 Sechium edule HOM05D003756 ORTHO05D004304 4.4e-28 127.5 74 83.8
CSS0028702 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 5.8e-28 127.1 74 79.7
Psat3g033400 Pisum sativum HOM05D003756 ORTHO05D004304 5.8e-28 127.1 76 82.9
HanXRQChr01g0024081 Helianthus annuus HOM05D003756 ORTHO05D004304 9.8e-28 126.3 76 82.9
Cfa016605 Carpinus fangiana HOM05D003756 ORTHO05D004304 1.3e-27 125.9 77 81.8
Haze_19608 Corylus avellana HOM05D003756 ORTHO05D004304 1.3e-27 125.9 77 81.8
Gohir.D01G195800 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.3e-27 125.9 76 84.2
Lalb_Chr20g0111721 Lupinus albus HOM05D003756 ORTHO05D004304 1.3e-27 125.9 78 80.8
Cpa.g.sc5.21 Carica papaya HOM05D003756 ORTHO05D004304 1.7e-27 125.6 76 80.3
ClCG04G010050 Citrullus lanatus HOM05D003756 ORTHO05D004304 1.7e-27 125.6 76 82.9
Glyma.03G195700 Glycine max HOM05D003756 ORTHO05D004304 1.7e-27 125.6 74 81.1
Gohir.A01G138200 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.7e-27 125.6 71 87.3
arahy.Tifrunner.gnm1.ann1.IH6TUL Arachis hypogaea HOM05D003756 ORTHO05D004304 2.2e-27 125.2 76 80.3
MELO3C009472.2 Cucumis melo HOM05D003756 ORTHO05D004304 2.9e-27 124.8 76 81.6
CsaV3_3G037270 Cucumis sativus L. HOM05D003756 ORTHO05D004304 2.9e-27 124.8 76 81.6
TWI74G1420 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 2.9e-27 124.8 74 78.4
Ca_09004_v3 Cicer arietinum L. HOM05D003756 ORTHO05D004304 3.7e-27 124.4 76 80.3
Glyma.13G153500 Glycine max HOM05D003756 ORTHO05D004304 3.7e-27 124.4 77 79.2
ECA248G1642 Erigeron canadensis HOM05D003756 ORTHO05D004304 4.9e-27 124.0 75 81.3
Medtr7g104570 Medicago truncatula HOM05D003756 ORTHO05D004304 4.9e-27 124.0 76 80.3
TAR636G3345 Trochodendron aralioides HOM05D003756 ORTHO05D004304 6.4e-27 123.6 74 79.7
Lsat_1_v5_gn_1_59380 Lactuca sativa HOM05D003756 ORTHO05D004304 1.4e-26 122.5 74 82.4
arahy.Tifrunner.gnm1.ann1.N59HKK Arachis hypogaea HOM05D003756 ORTHO05D004304 1.9e-26 122.1 95 65.3
Lsat_1_v5_gn_6_38741 Lactuca sativa HOM05D003756 ORTHO05D004304 1.9e-26 122.1 74 81.1
Lalb_Chr25g0288331 Lupinus albus HOM05D003756 ORTHO05D004304 1.9e-26 122.1 74 78.4
PGR142G3329 Punica granatum HOM05D003756 ORTHO05D004304 1.9e-26 122.1 76 77.6
CiPaw.09G013700 Carya illinoinensis HOM05D003756 ORTHO05D004304 2.4e-26 121.7 76 78.9
AUR62006180 Chenopodium quinoa HOM05D003756 ORTHO05D004304 2.4e-26 121.7 74 79.7
AUR62028527 Chenopodium quinoa HOM05D003756 ORTHO05D004304 2.4e-26 121.7 74 79.7
MD07G1149900 Malus domestica HOM05D003756 ORTHO05D004304 2.4e-26 121.7 76 80.3
QL07p038800 Quercus lobata HOM05D003756 ORTHO05D004304 2.4e-26 121.7 77 75.3
QL07p039050 Quercus lobata HOM05D003756 ORTHO05D004304 2.4e-26 121.7 77 75.3
GSVIVG01033840001 Vitis vinifera HOM05D003756 ORTHO05D004304 2.4e-26 121.7 74 81.1
CiPaw.10G009500 Carya illinoinensis HOM05D003756 ORTHO05D004304 3.2e-26 121.3 76 77.6
Peaxi162Scf00003g00522 Petunia axillaris HOM05D003756 ORTHO05D004304 4.1e-26 120.9 75 80.0
TWI53G0293 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 4.1e-26 120.9 79 73.4
Manes.08G025100 Manihot esculenta HOM05D003756 ORTHO05D004304 5.4e-26 120.6 76 77.6
Nn6g34903 Nelumbo nucifera HOM05D003756 ORTHO05D004304 5.4e-26 120.6 76 80.3
Potri.004G188700 Populus trichocarpa HOM05D003756 ORTHO05D004304 5.4e-26 120.6 69 81.2
HanXRQChr02g0054771 Helianthus annuus HOM05D003756 ORTHO05D004304 9.2e-26 119.8 74 79.7
MBI17_g08353_MAGBIO Magnolia biondii HOM05D003756 ORTHO05D004304 9.2e-26 119.8 75 81.3
Sc20g0006280 Simmondsia chinensis HOM05D003756 ORTHO05D004304 9.2e-26 119.8 76 76.3
Sabra04G0129400 Salix brachista HOM05D003756 ORTHO05D004304 1.6e-25 119.0 69 81.2
THA.LOC104804928 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 2.0e-25 118.6 76 77.6
Phvul.001G190200 Phaseolus vulgaris HOM05D003756 ORTHO05D004304 2.7e-25 118.2 74 75.7
Actinidia24215 Actinidia chinensis HOM05D003756 ORTHO05D004304 3.5e-25 117.9 74 79.7
Oeu002376.1 Olea europaea HOM05D003756 ORTHO05D004304 3.5e-25 117.9 74 77.0
Nitab4.5_0000755g0180 Nicotiana tabacum HOM05D003756 ORTHO05D004304 4.6e-25 117.5 72 77.8
ECA233G1974 Erigeron canadensis HOM05D003756 ORTHO05D004304 6.0e-25 117.1 73 76.7
TAR633G1678 Trochodendron aralioides HOM05D003756 ORTHO05D004304 6.0e-25 117.1 101 59.4
Atru.chr8.1542 Acer truncatum HOM05D003756 ORTHO05D004304 7.8e-25 116.7 76 77.6
CSS0017737 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 7.8e-25 116.7 74 78.4
CSS0036255 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 7.8e-25 116.7 74 78.4
Nitab4.5_0001216g0110 Nicotiana tabacum HOM05D003756 ORTHO05D004304 7.8e-25 116.7 90 66.7
PGSC0003DMG400005923 Solanum tuberosum HOM05D003756 ORTHO05D004304 7.8e-25 116.7 68 82.4
CDE06G0646 Ceratophyllum demersum HOM05D003756 ORTHO05D004304 1.0e-24 116.3 76 76.3
TAR623G0741 Trochodendron aralioides HOM05D003756 ORTHO05D004304 1.0e-24 116.3 76 78.9
HPP92_026089 Vanilla planifolia HOM05D003756 ORTHO05D004304 1.0e-24 116.3 74 74.3
THA.LOC104799762 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 1.3e-24 115.9 76 76.3
Actinidia07248 Actinidia chinensis HOM05D003756 ORTHO05D004304 3.9e-24 114.4 74 77.0
Aqoxy2G03946 Aquilegia oxysepala HOM05D003756 ORTHO05D004304 3.9e-24 114.4 71 77.5
Cc01_g09260 Coffea canephora HOM05D003756 ORTHO05D004304 3.9e-24 114.4 72 72.2
Solyc11g068400.2 Solanum lycopersicum HOM05D003756 ORTHO05D004304 3.9e-24 114.4 76 76.3
Sopen11g027120 Solanum pennellii HOM05D003756 ORTHO05D004304 3.9e-24 114.4 76 76.3
HPP92_025135 Vanilla planifolia HOM05D003756 ORTHO05D004304 3.9e-24 114.4 74 74.3
Atru.chr8.1539 Acer truncatum HOM05D003756 ORTHO05D004304 5.0e-24 114.0 76 75.0
AL5G33490 Arabidopsis lyrata HOM05D003756 ORTHO05D004304 8.6e-24 113.2 76 73.7
AT3G52730 Arabidopsis thaliana HOM05D003756 ORTHO05D004304 8.6e-24 113.2 76 73.7
Carub.0005s1918 Capsella rubella HOM05D003756 ORTHO05D004304 8.6e-24 113.2 76 73.7
CARHR162600 Cardamine hirsuta HOM05D003756 ORTHO05D004304 8.6e-24 113.2 76 73.7
THA.LOC104823490 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 8.6e-24 113.2 76 73.7
Actinidia35464 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.5e-23 112.5 74 75.7
Ah.08g210600 Amaranthus hybridus HOM05D001616 ORTHO05D003701 1.5e-23 112.5 100 60.0
CAN.G1358.12 Capsicum annuum HOM05D003756 ORTHO05D004304 1.9e-23 112.1 77 75.3
Aa31LG5G21370 Aethionema arabicum HOM05D003756 ORTHO05D004304 2.5e-23 111.7 74 73.0
Dinv42555 Davidia involucrata HOM05D003756 ORTHO05D004304 4.3e-23 110.9 74 74.3
CAN.G919.30 Capsicum annuum HOM05D003756 ORTHO05D004304 5.6e-23 110.5 64 78.1
CAN.G1039.16 Capsicum annuum HOM05D003756 ORTHO05D004304 1.2e-22 109.4 76 72.4
CAN.G2235.1 Capsicum annuum HOM05D003756 ORTHO05D004304 2.8e-22 108.2 76 72.4
Zm00001eb093400 Zea mays HOM05D003756 ORTHO05D004304 3.6e-22 107.8 66 74.2
COL.COLO4_29737 Corchorus olitorius HOM05D003756 ORTHO05D004304 6.2e-22 107.1 69 76.8
MD16G1126500 Malus domestica HOM05D003756 ORTHO05D004304 8.1e-22 106.7 69 76.8
Thhalv10010889m.g Eutrema salsugineum HOM05D003756 ORTHO05D004304 1.4e-21 105.9 66 77.3
Glyma.19G194915 Glycine max HOM05D003756 ORTHO05D004304 1.4e-21 105.9 103 56.3
Nitab4.5_0000132g0030 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.8e-21 105.5 83 65.1
Nitab4.5_0006996g0050 Nicotiana tabacum HOM05D003756 ORTHO05D004304 3.1e-21 104.8 56 87.5
Os05g0400400 Oryza sativa ssp. japonica HOM05D003756 ORTHO05D004304 3.1e-21 104.8 64 73.4
Zm00001eb196190 Zea mays HOM05D003756 ORTHO05D004304 3.1e-21 104.8 66 72.7
BcaB01g00346 Brassica carinata HOM05D003756 ORTHO05D004304 4.0e-21 104.4 65 78.5
BcaC07g39638 Brassica carinata HOM05D003756 ORTHO05D004304 4.0e-21 104.4 65 78.5
A09p45820 Brassica napus HOM05D003756 ORTHO05D004304 4.0e-21 104.4 65 78.5
C08p28010 Brassica napus HOM05D003756 ORTHO05D004304 4.0e-21 104.4 65 78.5
BolC8t50413H Brassica oleracea HOM05D003756 ORTHO05D004304 4.0e-21 104.4 65 78.5
BraA09t40043Z Brassica rapa HOM05D003756 ORTHO05D004304 4.0e-21 104.4 65 78.5
Duzib093G1183 Durio zibethinus HOM05D003756 ORTHO05D004304 4.0e-21 104.4 54 90.7
unitig_747.g21944 Utricularia gibba HOM05D003756 ORTHO05D004304 4.0e-21 104.4 70 72.9
BcaB02g07820 Brassica carinata HOM05D003756 ORTHO05D004304 5.2e-21 104.0 66 75.8
BcaB02g08557 Brassica carinata HOM05D003756 ORTHO05D004304 6.8e-21 103.6 66 75.8
BcaC02g09226 Brassica carinata HOM05D003756 ORTHO05D004304 6.8e-21 103.6 66 75.8
C04p40240 Brassica napus HOM05D003756 ORTHO05D004304 6.8e-21 103.6 66 75.8
BolC4t25600H Brassica oleracea HOM05D003756 ORTHO05D004304 6.8e-21 103.6 66 75.8
CsaV3_6G040700 Cucumis sativus L. HOM05D003756 ORTHO05D004304 6.8e-21 103.6 57 84.2
Sp5g09600 Schrenkiella parvula HOM05D003756 ORTHO05D004304 6.8e-21 103.6 66 75.8
A04p06750 Brassica napus HOM05D003756 ORTHO05D004304 8.9e-21 103.2 66 74.2
EL10Ac7g16918 Beta vulgaris HOM05D003756 ORTHO05D004304 1.5e-20 102.4 56 82.1
HanXRQChr14g0451601 Helianthus annuus HOM05D003756 ORTHO05D004304 1.5e-20 102.4 74 70.3
Sabra09G0117900 Salix brachista HOM05D003756 ORTHO05D004304 1.5e-20 102.4 57 78.9
SalBow5G5426 Salvia bowleyana HOM05D003756 ORTHO05D004304 1.5e-20 102.4 76 65.8
Migut.D02449 Erythranthe guttata HOM05D003756 ORTHO05D004304 4.4e-20 100.9 76 68.4
Hund19934 Selenicereus undatus HOM05D003756 ORTHO05D004304 4.4e-20 100.9 56 82.1
Sc02g0000240 Simmondsia chinensis HOM05D003756 ORTHO05D004304 4.4e-20 100.9 57 82.5
TPR.G19525 Trifolium pratense HOM05D003756 ORTHO05D004304 5.8e-20 100.5 56 82.1
Rhsim01G0205100 Rhododendron simsii HOM05D003756 ORTHO05D004304 7.5e-20 100.1 119 47.9
Rhsim13G0111400 Rhododendron simsii HOM05D003756 ORTHO05D004304 9.9e-20 99.8 89 53.9
Oeu035551.2 Olea europaea HOM05D003756 ORTHO05D004304 1.3e-19 99.4 61 78.7
CAN.G28765.1 Capsicum annuum HOM05D003756 ORTHO05D004304 1.9e-18 95.5 76 68.4
PSO384G4395 Papaver somniferum HOM05D003756 ORTHO05D004304 1.9e-18 95.5 72 65.3
SEGI_29748 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 1.9e-18 95.5 61 72.1
Actinidia37081 Actinidia chinensis HOM05D003756 ORTHO05D004304 3.2e-18 94.7 56 82.1
Ciclev10013189m.g Citrus clementina HOM05D003756 ORTHO05D004304 3.2e-18 94.7 57 75.4
ECA238G2045 Erigeron canadensis HOM05D003756 ORTHO05D004304 3.2e-18 94.7 68 66.2
PSO339G6416 Papaver somniferum HOM05D003756 ORTHO05D004304 3.2e-18 94.7 72 65.3
Hma1.2p1_0578F.1_g182500 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 5.4e-18 94.0 56 80.4
Dinv29482 Davidia involucrata HOM05D003756 ORTHO05D004304 7.1e-18 93.6 57 78.9
PGSC0003DMG400026342 Solanum tuberosum HOM05D003756 ORTHO05D004304 1.2e-17 92.8 68 67.6
ATR0796G241 Amborella trichopoda HOM05D003756 ORTHO05D004304 1.6e-17 92.4 53 77.4
Mapoly0074s0034 Marchantia polymorpha HOM05D003756 ORTHO05D004304 6.0e-17 90.5 71 63.4
Sp4g18470 Schrenkiella parvula HOM05D003756 ORTHO05D004304 7.8e-17 90.1 57 73.7
Nitab4.5_0000963g0100 Nicotiana tabacum HOM05D003756 ORTHO05D004304 2.3e-16 88.6 59 67.8
FAN13G0109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.9e-16 87.8 55 72.7
SalBow6G3312 Salvia bowleyana HOM05D003756 ORTHO05D004304 4.3e-15 84.3 57 64.9
BraA04t16378Z Brassica rapa HOM05D003756 ORTHO05D004304 1.2e-14 82.8 47 76.6
SEGI_32530 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 1.2e-14 82.8 56 69.6
Hma1.2p1_0084F.1_g043780 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 6.2e-14 80.5 56 66.1
MELO3C032936.2 Cucumis melo HOM05D003756 ORTHO05D004304 1.1e-13 79.7 41 85.4
Pp3c7_2560 Physcomitrium patens HOM05D003756 ORTHO05D004304 1.8e-13 79.0 65 52.3
RcHm_v2.0_Chr7g0240761 Rosa chinensis HOM05D003756 ORTHO05D004304 3.1e-13 78.2 40 90.0
FAN04G1204 Fragaria x ananassa HOM05D003756 ORTHO05D004304 4.0e-13 77.8 55 69.1
Pp3c11_23610 Physcomitrium patens HOM05D003756 ORTHO05D004304 4.0e-13 77.8 70 47.1
CBR_g21065 Chara braunii HOM05D003756 ORTHO05D004304 8.9e-13 76.6 66 57.6
FAN04G2029 Fragaria x ananassa HOM05D003756 ORTHO05D004304 8.9e-13 76.6 55 67.3
FAN21G3678 Fragaria x ananassa HOM05D002333 ORTHO05D004304 2.6e-12 75.1 43 83.7
FAN13G3094 Fragaria x ananassa HOM05D003756 ORTHO05D004304 4.4e-12 74.3 49 77.6
PSO478G0414 Papaver somniferum HOM05D003756 ORTHO05D004304 3.8e-11 71.2 59 57.6
Dinv33579 Davidia involucrata HOM05D003756 ORTHO05D004304 3.2e-10 68.2 36 80.6
Nn2g14157 Nelumbo nucifera HOM05D003756 ORTHO05D004304 6.6e-08 60.5 37 75.7
Aa31LG10G7740 Aethionema arabicum HOM05D003756 ORTHO05D004304 2.5e-07 58.5 40 67.5


User provided reference genes

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