Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g10570 Fragaria vesca HOM05D008304 ORTHO05D004056 9.6e-27 122.9 67 100.0
FAN04G0709 Fragaria x ananassa HOM05D008304 ORTHO05D012179 9.6e-27 122.9 67 100.0
FAN13G2184 Fragaria x ananassa HOM05D008304 ORTHO05D012179 9.6e-27 122.9 67 100.0
FAN18G4101 Fragaria x ananassa HOM05D008304 ORTHO05D012179 9.6e-27 122.9 67 100.0
MD06G1122200 Malus domestica HOM05D008304 ORTHO05D004056 5.5e-14 80.5 71 70.4
Prupe.5G132900 Prunus persica HOM05D008304 ORTHO05D004056 7.1e-14 80.1 71 73.2
MD14G1138600 Malus domestica HOM05D008304 ORTHO05D004056 1.6e-13 79.0 70 71.4
Manes.01G055200 Manihot esculenta HOM05D008304 ORTHO05D004056 6.2e-10 67.0 79 59.5
ClCG01G001410 Citrullus lanatus HOM05D008304 ORTHO05D004056 8.2e-10 66.6 83 56.6
COL.COLO4_10829 Corchorus olitorius HOM05D008304 ORTHO05D004056 1.1e-09 66.2 81 58.0
TAR629G3464 Trochodendron aralioides HOM05D008304 ORTHO05D004056 1.1e-09 66.2 76 59.2
Sabra16G0303400 Salix brachista HOM05D008304 ORTHO05D004056 1.4e-09 65.9 69 62.3
Cpa.g.sc37.98 Carica papaya HOM05D008304 ORTHO05D004056 1.8e-09 65.5 79 58.2
CSS0003921 Camellia sinensis var. sinensis HOM05D008304 ORTHO05D004056 2.4e-09 65.1 89 51.7
Actinidia22217 Actinidia chinensis HOM05D008304 ORTHO05D004056 4.0e-09 64.3 86 54.7
Atru.chr9.1863 Acer truncatum HOM05D008304 ORTHO05D004056 5.3e-09 63.9 69 63.8
CANSAT21G0162 Cannabis sativa HOM05D008304 ORTHO05D004056 5.3e-09 63.9 76 55.3
CiPaw.11G110100 Carya illinoinensis HOM05D008304 ORTHO05D004056 6.9e-09 63.5 85 55.3
Duzib205G1739 Durio zibethinus HOM05D008304 ORTHO05D004056 6.9e-09 63.5 76 56.6
Haze_09200 Corylus avellana HOM05D008304 ORTHO05D004056 9.0e-09 63.2 83 54.2
QL02p027330 Quercus lobata HOM05D008304 ORTHO05D004056 9.0e-09 63.2 80 56.2
Thecc.03G217700 Theobroma cacao HOM05D008304 ORTHO05D004056 9.0e-09 63.2 79 57.0
Cfa011898 Carpinus fangiana HOM05D008304 ORTHO05D004056 1.5e-08 62.4 83 54.2
Potri.001G449633 Populus trichocarpa HOM05D008304 ORTHO05D004056 1.5e-08 62.4 69 59.4
Nitab4.5_0002520g0050 Nicotiana tabacum HOM05D008304 ORTHO05D004056 2.0e-08 62.0 88 52.3
Gohir.A12G241800 Gossypium hirsutum HOM05D008304 ORTHO05D004056 2.6e-08 61.6 76 53.9
GSVIVG01019681001 Vitis vinifera HOM05D008304 ORTHO05D004056 2.6e-08 61.6 82 53.7
Gohir.D09G182600 Gossypium hirsutum HOM05D008304 ORTHO05D004056 3.4e-08 61.2 76 53.9
Gorai.006G204900 Gossypium raimondii HOM05D008304 ORTHO05D004056 3.4e-08 61.2 76 53.9
Gorai.008G260200 Gossypium raimondii HOM05D008304 ORTHO05D004056 3.4e-08 61.2 76 53.9
Potri.011G151900 Populus trichocarpa HOM05D008304 ORTHO05D004056 4.5e-08 60.8 71 62.0
Dinv12896 Davidia involucrata HOM05D008304 ORTHO05D004056 7.6e-08 60.1 82 54.9
Gohir.D12G243000 Gossypium hirsutum HOM05D008304 ORTHO05D004056 7.6e-08 60.1 76 52.6
Gohir.A09G187800 Gossypium hirsutum HOM05D008304 ORTHO05D004056 1.0e-07 59.7 77 54.5
Sed0018210 Sechium edule HOM05D008304 ORTHO05D004056 1.0e-07 59.7 78 55.1
Oeu015753.1 Olea europaea HOM05D008304 ORTHO05D004056 1.3e-07 59.3 67 61.2
Oeu042857.1 Olea europaea HOM05D008304 ORTHO05D004056 1.3e-07 59.3 72 58.3
CDE04G3503 Ceratophyllum demersum HOM05D008304 ORTHO05D004056 2.2e-07 58.5 75 54.7
Peaxi162Scf00074g00131 Petunia axillaris HOM05D008304 ORTHO05D004056 2.2e-07 58.5 78 53.8
MBI04_g22063_MAGBIO Magnolia biondii HOM05D008304 ORTHO05D004056 3.8e-07 57.8 77 55.8
Dinv18759 Davidia involucrata HOM05D008304 ORTHO05D004056 4.9e-07 57.4 93 49.5
Eucgr.D01660 Eucalyptus grandis HOM05D008304 ORTHO05D004056 4.9e-07 57.4 81 48.1
HanXRQChr07g0192251 Helianthus annuus HOM05D010428 ORTHO05D012179 4.9e-07 57.4 64 59.4
Sabra13G0111400 Salix brachista HOM05D005953 ORTHO05D004056 4.9e-07 57.4 66 57.6
ECA233G3589 Erigeron canadensis HOM05D000020 ORTHO05D000543 6.5e-07 57.0 62 59.7
CDE08G1618 Ceratophyllum demersum HOM05D005953 ORTHO05D004056 8.4e-07 56.6 79 50.6
Ciclev10023139m.g Citrus clementina HOM05D008304 ORTHO05D004056 8.4e-07 56.6 81 54.3
RcHm_v2.0_Chr7g0187581 Rosa chinensis HOM05D008304 ORTHO05D004056 8.4e-07 56.6 72 56.9
Carub.0007s3322 Capsella rubella HOM05D010428 ORTHO05D012179 1.1e-06 56.2 67 56.7
Sabra11G0136700 Salix brachista HOM05D008304 ORTHO05D004056 1.1e-06 56.2 71 57.7
Sabra11G0148600 Salix brachista HOM05D008304 ORTHO05D004056 1.1e-06 56.2 71 57.7
Thecc.02G179300 Theobroma cacao HOM05D005953 ORTHO05D004056 1.1e-06 56.2 80 51.2
AL7G47030 Arabidopsis lyrata HOM05D010428 ORTHO05D012179 1.4e-06 55.8 67 56.7
Thhalv10027949m.g Eutrema salsugineum HOM05D010428 ORTHO05D012179 1.4e-06 55.8 64 57.8
BcaB06g27689 Brassica carinata HOM05D010428 ORTHO05D012179 1.9e-06 55.5 69 55.1
A04p15180 Brassica napus HOM05D010428 ORTHO05D012179 1.9e-06 55.5 67 55.2
A07p21150 Brassica napus HOM05D010428 ORTHO05D012179 1.9e-06 55.5 69 56.5
vmacro11488 Vaccinium macrocarpon HOM05D008304 ORTHO05D004056 1.9e-06 55.5 89 48.3
BraA04t17159Z Brassica rapa HOM05D010428 ORTHO05D012179 2.5e-06 55.1 67 55.2
CARHR212450 Cardamine hirsuta HOM05D010428 ORTHO05D012179 2.5e-06 55.1 67 53.7
Nn1g06570 Nelumbo nucifera HOM05D005953 ORTHO05D004056 2.5e-06 55.1 82 47.6
ATR0304G024 Amborella trichopoda HOM05D005953 ORTHO05D004056 3.2e-06 54.7 81 51.9
BcaB02g07862 Brassica carinata HOM05D010428 ORTHO05D012179 3.2e-06 54.7 69 55.1
Ca_01501_v3 Cicer arietinum L. HOM05D005953 ORTHO05D004056 3.2e-06 54.7 68 50.0
Migut.H01186 Erythranthe guttata HOM05D005953 ORTHO05D004056 3.2e-06 54.7 71 50.7
MBI06_g06482_MAGBIO Magnolia biondii HOM05D005953 ORTHO05D004056 3.2e-06 54.7 79 49.4
AT5G42110 Arabidopsis thaliana HOM05D010428 ORTHO05D012179 4.2e-06 54.3 67 55.2
MBI12_g20132_MAGBIO Magnolia biondii HOM05D008304 ORTHO05D004056 4.2e-06 54.3 79 51.9
Sp7g00020 Schrenkiella parvula HOM05D010428 ORTHO05D012179 4.2e-06 54.3 67 55.2
BcaC02g08890 Brassica carinata HOM05D010428 ORTHO05D012179 7.1e-06 53.5 69 55.1
C04p49410 Brassica napus HOM05D010428 ORTHO05D012179 7.1e-06 53.5 69 55.1
BolC4t26526H Brassica oleracea HOM05D010428 ORTHO05D012179 7.1e-06 53.5 69 55.1
Medtr2g090340 Medicago truncatula HOM05D005953 ORTHO05D004056 7.1e-06 53.5 71 50.7
Lalb_Chr03g0029431 Lupinus albus HOM05D005953 ORTHO05D004056 9.3e-06 53.1 68 52.9
MBI07_g12792_MAGBIO Magnolia biondii HOM05D005953 ORTHO05D004056 9.3e-06 53.1 82 51.2


User provided reference genes

Program Settings