Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G4076 Fragaria x ananassa HOM05D006494 ORTHO05D007787 3.2e-130 468.4 234 100.0
FvH4_5g32440 Fragaria vesca HOM05D006494 ORTHO05D007787 6.1e-129 464.2 234 98.7
FAN13G0811 Fragaria x ananassa HOM05D006494 ORTHO05D007787 1.6e-121 439.5 235 93.6
FAN08G0782 Fragaria x ananassa HOM05D006494 ORTHO05D007787 3.6e-121 438.3 235 94.5
FvH4_6g37300 Fragaria vesca HOM05D006494 ORTHO05D007787 5.8e-87 324.7 236 73.3
FAN14G1471 Fragaria x ananassa HOM05D006494 ORTHO05D007787 2.2e-86 322.8 236 72.9
FAN02G3807 Fragaria x ananassa HOM05D006494 ORTHO05D007787 1.6e-84 316.6 236 72.0
RcHm_v2.0_Chr3g0482351 Rosa chinensis HOM05D006494 ORTHO05D007787 1.6e-84 316.6 237 72.6
FAN05G4065 Fragaria x ananassa HOM05D006494 ORTHO05D007787 3.9e-83 312.0 236 71.6
FAN14G4923 Fragaria x ananassa HOM05D006494 ORTHO05D007787 1.1e-77 293.9 234 66.7
FvH4_6g24000 Fragaria vesca HOM05D006494 ORTHO05D007787 2.4e-77 292.7 234 66.2
FAN05G2781 Fragaria x ananassa HOM05D000001 ORTHO05D009295 1.8e-72 276.6 231 65.4
RcHm_v2.0_Chr3g0482771 Rosa chinensis HOM05D006494 ORTHO05D007787 5.3e-56 221.9 236 55.9
RcHm_v2.0_Chr3g0486201 Rosa chinensis HOM05D006494 ORTHO05D007787 3.9e-43 179.1 236 48.3
FvH4_2g09870 Fragaria vesca HOM05D006494 ORTHO05D007787 1.2e-39 167.5 182 55.5
MD12G1079700 Malus domestica HOM05D006494 ORTHO05D007787 8.8e-35 151.4 244 45.9
MD14G1075900 Malus domestica HOM05D006494 ORTHO05D007787 7.4e-34 148.3 242 44.2
RcHm_v2.0_Chr3g0482721 Rosa chinensis HOM05D006494 ORTHO05D007787 1.8e-32 143.7 155 51.6
Prupe.7G058200 Prunus persica HOM05D006494 ORTHO05D007787 5.9e-31 138.7 242 44.6
MD07G1041300 Malus domestica HOM05D006494 ORTHO05D007787 7.5e-26 121.7 247 38.5
TWI39G0535 Tripterygium wilfordii HOM05D006494 ORTHO05D007787 2.2e-25 120.2 265 36.6
Ciclev10005709m.g Citrus clementina HOM05D006494 ORTHO05D007787 5.3e-24 115.5 261 36.8
Thecc.04G169800 Theobroma cacao HOM05D006494 ORTHO05D007787 1.6e-23 114.0 259 35.9
QL09p013118 Quercus lobata HOM05D006494 ORTHO05D007787 1.1e-21 107.8 265 35.8
Thecc.03G182400 Theobroma cacao HOM05D006494 ORTHO05D007787 4.2e-21 105.9 253 35.2
FAN24G2166 Fragaria x ananassa HOM05D006494 ORTHO05D007787 5.5e-21 105.5 65 81.5
TWI23G1164 Tripterygium wilfordii HOM05D006494 ORTHO05D007787 7.2e-21 105.1 261 33.3
TWI39G0536 Tripterygium wilfordii HOM05D006494 ORTHO05D007787 5.2e-19 99.0 260 33.1
Ciclev10030388m.g Citrus clementina HOM05D006494 ORTHO05D007787 1.5e-18 97.4 260 32.3
Duzib151G1204 Durio zibethinus HOM05D006494 ORTHO05D007787 2.0e-18 97.1 257 33.5
Prupe.7G043900 Prunus persica HOM05D006494 ORTHO05D007787 2.6e-18 96.7 296 32.4
Gohir.D02G108900 Gossypium hirsutum HOM05D006494 ORTHO05D007787 4.4e-18 95.9 205 37.6
Duzib268G1872 Durio zibethinus HOM05D006494 ORTHO05D007787 7.5e-18 95.1 262 34.0
COL.COLO4_10079 Corchorus olitorius HOM05D006494 ORTHO05D007787 9.8e-18 94.7 261 33.3
Gohir.A02G091800 Gossypium hirsutum HOM05D006494 ORTHO05D007787 1.3e-17 94.4 254 34.3
Cfa016278 Carpinus fangiana HOM05D006494 ORTHO05D007787 3.7e-17 92.8 270 31.9
Haze_00032 Corylus avellana HOM05D006494 ORTHO05D007787 3.7e-17 92.8 268 31.7
Gorai.005G124800 Gossypium raimondii HOM05D006494 ORTHO05D007787 3.7e-17 92.8 205 37.1
COL.COLO4_28030 Corchorus olitorius HOM05D006494 ORTHO05D007787 6.3e-17 92.0 233 32.2
Dinv28397 Davidia involucrata HOM05D006494 ORTHO05D007787 1.1e-16 91.3 268 34.3
Gohir.A10G141700 Gossypium hirsutum HOM05D006494 ORTHO05D007787 1.8e-16 90.5 259 33.6
Gorai.011G137900 Gossypium raimondii HOM05D006494 ORTHO05D007787 4.1e-16 89.4 259 33.6
Gohir.D10G124800 Gossypium hirsutum HOM05D006494 ORTHO05D007787 1.2e-15 87.8 259 33.2
CsaV3_3G017370 Cucumis sativus L. HOM05D006494 ORTHO05D007787 1.6e-15 87.4 239 34.7
Manes.06G151500 Manihot esculenta HOM05D006494 ORTHO05D007787 3.5e-15 86.3 256 33.2
Nitab4.5_0000084g0320 Nicotiana tabacum HOM05D006494 ORTHO05D007787 7.7e-15 85.1 208 35.6
MELO3C018639.2 Cucumis melo HOM05D006494 ORTHO05D007787 5.0e-14 82.4 238 34.0
Cc02_g02520 Coffea canephora HOM05D006494 ORTHO05D007787 6.5e-14 82.0 150 38.7
Eucgr.K00289 Eucalyptus grandis HOM05D006494 ORTHO05D007787 6.5e-14 82.0 258 30.2
vmacro09820 Vaccinium macrocarpon HOM05D006494 ORTHO05D007787 6.5e-14 82.0 272 30.9
PGR142G1234 Punica granatum HOM05D006494 ORTHO05D007787 1.5e-13 80.9 269 32.0
ClCG05G008270 Citrullus lanatus HOM05D006494 ORTHO05D007787 5.5e-13 79.0 235 33.2
Hma1.2p1_0327F.1_g126290 Hydrangea macrophylla HOM05D006494 ORTHO05D007787 7.2e-13 78.6 254 31.1
Lalb_Chr02g0144041 Lupinus albus HOM05D006494 ORTHO05D007787 1.6e-12 77.4 260 32.3
Phvul.007G073600 Phaseolus vulgaris HOM05D006494 ORTHO05D007787 2.1e-12 77.0 265 32.8
SGA_v2.0_scaffold10G05304 Striga asiatica HOM05D006494 ORTHO05D007787 2.1e-12 77.0 243 32.1
PGSC0003DMG400010122 Solanum tuberosum HOM05D006494 ORTHO05D007787 2.8e-12 76.6 159 37.1
Cpa.g.sc107.95 Carica papaya HOM05D006494 ORTHO05D007787 3.6e-12 76.3 257 31.5
Rhsim09G0199800 Rhododendron simsii HOM05D006494 ORTHO05D007787 3.6e-12 76.3 265 30.9
Solyc03g025160.4 Solanum lycopersicum HOM05D006494 ORTHO05D007787 3.6e-12 76.3 179 35.2
VMungo0720G0554 Vigna mungo HOM05D006494 ORTHO05D007787 3.6e-12 76.3 259 29.3
CiPaw.05G263300 Carya illinoinensis HOM05D006494 ORTHO05D007787 4.7e-12 75.9 260 30.0
Lalb_Chr21g0305211 Lupinus albus HOM05D006494 ORTHO05D007787 6.1e-12 75.5 277 31.8
Sopen03g004010 Solanum pennellii HOM05D006494 ORTHO05D007787 6.1e-12 75.5 179 34.6
Actinidia34147 Actinidia chinensis HOM05D006494 ORTHO05D007787 8.0e-12 75.1 256 27.7
arahy.Tifrunner.gnm1.ann1.HAQV4X Arachis hypogaea HOM05D006494 ORTHO05D007787 8.0e-12 75.1 245 31.4
Oeu006795.1 Olea europaea HOM05D006494 ORTHO05D007787 1.0e-11 74.7 253 30.0
SalBow2G1868 Salvia bowleyana HOM05D006494 ORTHO05D007787 1.0e-11 74.7 244 30.3
SalBow2G2185 Salvia bowleyana HOM05D006494 ORTHO05D007787 1.0e-11 74.7 244 30.3
TPR.G26961 Trifolium pratense HOM05D006494 ORTHO05D007787 1.0e-11 74.7 263 29.3
Rhsim09G0200100 Rhododendron simsii HOM05D006494 ORTHO05D007787 1.4e-11 74.3 264 30.7
Peaxi162Scf00444g00014 Petunia axillaris HOM05D006494 ORTHO05D007787 2.3e-11 73.6 237 31.6
HanXRQChr09g0252471 Helianthus annuus HOM05D006494 ORTHO05D007787 3.0e-11 73.2 240 30.0
arahy.Tifrunner.gnm1.ann1.J3K5XQ Arachis hypogaea HOM05D006494 ORTHO05D007787 5.2e-11 72.4 245 31.0
Sed0015630 Sechium edule HOM05D006494 ORTHO05D007787 6.8e-11 72.0 243 32.5
ECA232G1863 Erigeron canadensis HOM05D006494 ORTHO05D007787 8.8e-11 71.6 161 34.2
Actinidia20864 Actinidia chinensis HOM05D006494 ORTHO05D007787 1.2e-10 71.2 258 28.3
Migut.F01093 Erythranthe guttata HOM05D006494 ORTHO05D007787 2.6e-10 70.1 255 32.2
Manes.14G023400 Manihot esculenta HOM05D006494 ORTHO05D007787 4.4e-10 69.3 234 29.5
Ca_10732_v3 Cicer arietinum L. HOM05D006494 ORTHO05D007787 9.8e-10 68.2 266 28.9
Rhsim03G0190000 Rhododendron simsii HOM05D006494 ORTHO05D007787 1.7e-09 67.4 155 33.5
Actinidia31832 Actinidia chinensis HOM05D006494 ORTHO05D007787 2.8e-09 66.6 196 31.1
MSTRG.8473 Avicennia marina HOM05D006494 ORTHO05D007787 4.9e-09 65.9 252 29.4
TAR629G2733 Trochodendron aralioides HOM05D006494 ORTHO05D007787 6.3e-09 65.5 273 31.5
Potri.017G113501 Populus trichocarpa HOM05D006494 ORTHO05D007787 8.3e-09 65.1 217 31.8
Peaxi162Scf00618g00753 Petunia axillaris HOM05D006494 ORTHO05D007787 1.4e-08 64.3 166 30.1
Oeu022606.1 Olea europaea HOM05D006494 ORTHO05D007787 1.8e-08 63.9 254 28.7
CSS0030697 Camellia sinensis var. sinensis HOM05D006494 ORTHO05D007787 2.4e-08 63.5 164 30.5
Glyma.20G162200 Glycine max HOM05D006494 ORTHO05D007787 2.4e-08 63.5 208 32.2
Migut.F00309 Erythranthe guttata HOM05D006494 ORTHO05D007787 4.1e-08 62.8 239 29.7
Glyma.10G231900 Glycine max HOM05D006494 ORTHO05D007787 7.0e-08 62.0 257 28.8
vmacro06639 Vaccinium macrocarpon HOM05D006494 ORTHO05D007787 1.6e-07 60.8 255 27.5
DCAR_020265 Daucus carota HOM05D006494 ORTHO05D007787 3.5e-07 59.7 183 31.7
Aqoxy3G03609 Aquilegia oxysepala HOM05D006748 ORTHO05D008553 4.5e-07 59.3 207 29.0
Lj5g0022841 Lotus japonicus HOM05D006494 ORTHO05D007787 5.9e-07 58.9 268 29.5
COL.COLO4_10083 Corchorus olitorius HOM05D006494 ORTHO05D007787 5.0e-06 55.8 152 30.9
PGSC0003DMG400029922 Solanum tuberosum HOM05D006494 ORTHO05D007787 5.0e-06 55.8 241 27.8


User provided reference genes

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