Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G4071 Fragaria x ananassa HOM05D005253 ORTHO05D006058 5.8e-157 557.8 334 100.0
FvH4_5g13401 Fragaria vesca HOM05D005253 ORTHO05D006058 3.3e-144 515.4 334 94.9
FAN08G1625 Fragaria x ananassa HOM05D005253 ORTHO05D006058 1.3e-140 503.4 336 93.2
FAN13G1214 Fragaria x ananassa HOM05D005253 ORTHO05D006058 2.7e-138 495.7 334 92.8
RcHm_v2.0_Chr7g0183731 Rosa chinensis HOM05D005253 ORTHO05D006058 8.2e-119 431.0 339 81.4
Prupe.5G210000 Prunus persica HOM05D005253 ORTHO05D006058 5.2e-89 332.0 351 67.0
MD14G1216600 Malus domestica HOM05D005253 ORTHO05D006058 7.5e-88 328.2 351 67.0
MD06G1205700 Malus domestica HOM05D005253 ORTHO05D006058 1.3e-84 317.4 351 65.5
Cfa017731 Carpinus fangiana HOM05D005253 ORTHO05D006058 8.6e-84 314.7 352 62.5
Duzib068G0534 Durio zibethinus HOM05D005253 ORTHO05D006058 1.6e-82 310.5 345 60.6
Haze_18511 Corylus avellana HOM05D005253 ORTHO05D006058 2.1e-82 310.1 353 62.0
GSVIVG01008154001 Vitis vinifera HOM05D005253 ORTHO05D006058 4.0e-81 305.8 356 63.8
TWI60G1362 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 5.2e-81 305.4 346 59.5
Rhsim08G0142100 Rhododendron simsii HOM05D005253 ORTHO05D006058 2.4e-78 296.6 344 54.1
Glyma.17G081700 Glycine max HOM05D005253 ORTHO05D006058 2.7e-77 293.1 344 59.6
Gohir.D07G063700 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.0e-76 291.2 352 55.7
Glyma.05G018200 Glycine max HOM05D005253 ORTHO05D006058 1.7e-76 290.4 343 58.6
vmacro17641 Vaccinium macrocarpon HOM05D005253 ORTHO05D006058 3.0e-76 289.7 374 51.3
Dinv38642 Davidia involucrata HOM05D005253 ORTHO05D006058 6.6e-76 288.5 360 57.8
TWI81G0215 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 1.6e-74 283.9 346 57.5
Gohir.A09G243900 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.8e-73 280.4 343 53.9
Ciclev10020920m.g Citrus clementina HOM05D005253 ORTHO05D006058 5.2e-73 278.9 355 56.6
Gorai.006G268700 Gossypium raimondii HOM05D005253 ORTHO05D006058 2.0e-72 276.9 343 56.6
CANSAT80G0823 Cannabis sativa HOM05D005253 ORTHO05D006058 2.6e-72 276.6 346 53.2
Duzib205G1609 Durio zibethinus HOM05D005253 ORTHO05D006058 3.4e-72 276.2 349 51.9
Lj4g0025893 Lotus japonicus HOM05D005253 ORTHO05D006058 2.4e-70 270.0 349 53.9
Medtr4g109960 Medicago truncatula HOM05D005253 ORTHO05D006058 3.2e-70 269.6 344 50.3
VMungo1215G3162 Vigna mungo HOM05D005253 ORTHO05D006058 3.2e-70 269.6 343 59.2
arahy.Tifrunner.gnm1.ann1.TSF3K2 Arachis hypogaea HOM05D005253 ORTHO05D006058 1.2e-69 267.7 357 55.2
arahy.Tifrunner.gnm1.ann1.399KXC Arachis hypogaea HOM05D005253 ORTHO05D006058 2.7e-69 266.5 353 56.9
Potri.004G107000 Populus trichocarpa HOM05D005253 ORTHO05D006058 3.5e-69 266.2 354 52.8
CSS0036905 Camellia sinensis var. sinensis HOM05D005253 ORTHO05D006058 1.0e-68 264.6 353 57.8
Lalb_Chr13g0302681 Lupinus albus HOM05D005253 ORTHO05D006058 1.3e-68 264.2 331 57.4
MSTRG.9581 Avicennia marina HOM05D005253 ORTHO05D006058 1.7e-68 263.8 347 58.8
Gohir.A07G058832 Gossypium hirsutum HOM05D005253 ORTHO05D006058 5.0e-68 262.3 352 52.6
TPR.G1989 Trifolium pratense HOM05D005253 ORTHO05D006058 5.0e-68 262.3 340 51.5
Phvul.003G182200 Phaseolus vulgaris HOM05D005253 ORTHO05D006058 6.6e-68 261.9 344 55.5
Gorai.001G067300 Gossypium raimondii HOM05D005253 ORTHO05D006058 8.6e-68 261.5 352 51.1
Dinv17459 Davidia involucrata HOM05D005253 ORTHO05D006058 1.1e-67 261.2 283 65.4
Sed0023471 Sechium edule HOM05D005253 ORTHO05D006058 1.1e-67 261.2 362 53.9
Gohir.D09G244600 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.4e-65 254.2 343 51.3
Hund09956 Selenicereus undatus HOM05D005253 ORTHO05D006058 6.8e-65 251.9 332 57.5
AUR62039667 Chenopodium quinoa HOM05D005253 ORTHO05D006058 3.7e-63 246.1 304 61.5
Peaxi162Scf00017g03254 Petunia axillaris HOM05D005253 ORTHO05D006058 8.3e-63 245.0 358 54.2
Manes.14G089100 Manihot esculenta HOM05D005253 ORTHO05D006058 1.9e-62 243.8 360 53.3
Nitab4.5_0002467g0110 Nicotiana tabacum HOM05D005253 ORTHO05D006058 1.9e-62 243.8 352 54.8
TPR.G2086 Trifolium pratense HOM05D005253 ORTHO05D006058 1.9e-62 243.8 318 50.9
Solyc03g114760.3 Solanum lycopersicum HOM05D005253 ORTHO05D006058 9.2e-62 241.5 349 52.7
MBI14_g08108_MAGBIO Magnolia biondii HOM05D005253 ORTHO05D006058 1.2e-61 241.1 347 51.9
Lsat_1_v5_gn_5_23380 Lactuca sativa HOM05D005253 ORTHO05D006058 3.5e-61 239.6 323 52.9
THA.LOC104818357 Tarenaya hassleriana HOM05D005253 ORTHO05D006058 1.3e-60 237.7 342 52.0
PGSC0003DMG400024524 Solanum tuberosum HOM05D005253 ORTHO05D006058 1.7e-60 237.3 349 54.4
Sopen03g033840 Solanum pennellii HOM05D005253 ORTHO05D006058 2.3e-60 236.9 349 53.0
Nitab4.5_0005994g0050 Nicotiana tabacum HOM05D005253 ORTHO05D006058 6.6e-60 235.3 351 54.7
Manes.06G080800 Manihot esculenta HOM05D005253 ORTHO05D006058 8.6e-60 235.0 351 51.9
Cc04_g08280 Coffea canephora HOM05D005253 ORTHO05D006058 2.5e-59 233.4 356 46.3
SGA_v2.0_scaffold65G22104 Striga asiatica HOM05D005253 ORTHO05D006058 2.5e-59 233.4 339 49.6
Cpa.g.sc3.232 Carica papaya HOM05D005253 ORTHO05D006058 9.5e-59 231.5 358 51.1
ECA246G0831 Erigeron canadensis HOM05D005253 ORTHO05D006058 9.5e-59 231.5 328 49.4
SHI17413 Sapria himalayana HOM05D005253 ORTHO05D006058 9.5e-59 231.5 340 50.3
Ah.02g114240 Amaranthus hybridus HOM05D005253 ORTHO05D006058 1.2e-58 231.1 323 55.1
PSO478G2666 Papaver somniferum HOM05D005253 ORTHO05D006058 1.2e-58 231.1 347 50.7
Thhalv10014100m.g Eutrema salsugineum HOM05D005253 ORTHO05D006058 3.6e-58 229.6 338 45.0
PSO017G7367 Papaver somniferum HOM05D005253 ORTHO05D006058 3.6e-58 229.6 347 46.1
QL10p020742 Quercus lobata HOM05D005253 ORTHO05D006058 3.6e-58 229.6 522 41.2
Sc04g0003900 Simmondsia chinensis HOM05D005253 ORTHO05D006058 3.6e-58 229.6 318 48.7
EL10Ac5g11189 Beta vulgaris HOM05D005253 ORTHO05D006058 8.1e-58 228.4 318 52.8
Oeu014427.1 Olea europaea HOM05D005253 ORTHO05D006058 8.1e-58 228.4 344 54.4
Migut.D01615 Erythranthe guttata HOM05D005253 ORTHO05D006058 1.1e-57 228.0 342 53.8
TAR371G0033 Trochodendron aralioides HOM05D005253 ORTHO05D006058 1.1e-57 228.0 355 50.7
Hund02544 Selenicereus undatus HOM05D005253 ORTHO05D006058 1.8e-57 227.3 320 53.4
Nitab4.5_0002041g0040 Nicotiana tabacum HOM05D005253 ORTHO05D006058 5.2e-57 225.7 347 49.9
AT5G08120 Arabidopsis thaliana HOM05D005253 ORTHO05D006058 6.8e-57 225.3 338 47.0
AL6G18490 Arabidopsis lyrata HOM05D005253 ORTHO05D006058 8.9e-57 224.9 338 46.2
SalBow7G2030 Salvia bowleyana HOM05D005253 ORTHO05D006058 1.2e-56 224.6 354 45.8
COL.COLO4_27496 Corchorus olitorius HOM05D005253 ORTHO05D006058 2.0e-56 223.8 348 46.0
Prupe.8G074000 Prunus persica HOM05D005253 ORTHO05D006058 4.9e-55 219.2 271 54.2
Eucgr.K02550 Eucalyptus grandis HOM05D005253 ORTHO05D006058 8.4e-55 218.4 275 57.1
Hma1.2p1_0060F.1_g032740 Hydrangea macrophylla HOM05D005253 ORTHO05D006058 1.9e-54 217.2 385 44.2
BraA10t44904Z Brassica rapa HOM05D005253 ORTHO05D006058 7.1e-54 215.3 305 46.6
DCAR_010175 Daucus carota HOM05D005253 ORTHO05D006058 7.1e-54 215.3 350 46.0
Nn3g17535 Nelumbo nucifera HOM05D005253 ORTHO05D006058 1.2e-53 214.5 354 48.3
Peaxi162Scf00365g00114 Petunia axillaris HOM05D005253 ORTHO05D006058 3.5e-53 213.0 349 43.3
AUR62032138 Chenopodium quinoa HOM05D005253 ORTHO05D006058 6.6e-52 208.8 275 60.4
CARHR205070 Cardamine hirsuta HOM05D005253 ORTHO05D006058 1.9e-51 207.2 343 44.3
Lj9C438G4 Lonicera japonica HOM05D005253 ORTHO05D006058 1.6e-50 204.1 327 50.8
unitig_578.g15937 Utricularia gibba HOM05D005253 ORTHO05D006058 3.6e-50 203.0 347 45.0
HanXRQChr02g0051141 Helianthus annuus HOM05D005253 ORTHO05D006058 4.7e-50 202.6 328 50.6
PGR044G0085 Punica granatum HOM05D005253 ORTHO05D006058 4.7e-50 202.6 340 49.1
Lj1g0009577 Lotus japonicus HOM05D005253 ORTHO05D006058 6.2e-50 202.2 299 52.8
ClCG04G011560 Citrullus lanatus HOM05D005253 ORTHO05D006058 8.1e-50 201.8 362 41.4
CiPaw.16G080100 Carya illinoinensis HOM05D005253 ORTHO05D006058 1.1e-49 201.4 271 58.3
HanXRQChr05g0157441 Helianthus annuus HOM05D005253 ORTHO05D006058 1.8e-49 200.7 342 46.8
BcaB08g37285 Brassica carinata HOM05D005253 ORTHO05D006058 3.1e-49 199.9 305 43.0
C09p68830 Brassica napus HOM05D005253 ORTHO05D006058 3.1e-49 199.9 305 43.0
CAN.G982.39 Capsicum annuum HOM05D005253 ORTHO05D006058 5.2e-49 199.1 410 42.0
Glyma.04G159100 Glycine max HOM05D005253 ORTHO05D006058 6.9e-49 198.7 305 43.3
unitig_8.g4498 Utricularia gibba HOM05D005253 ORTHO05D006058 1.7e-47 194.1 349 47.3
Ca_21755_v3 Cicer arietinum L. HOM05D005253 ORTHO05D006058 2.2e-47 193.7 345 43.2
Ah.11g047400 Amaranthus hybridus HOM05D005253 ORTHO05D006058 4.9e-47 192.6 326 43.9
Thecc.03G108400 Theobroma cacao HOM05D005253 ORTHO05D006058 6.4e-47 192.2 252 55.6
PSO063G5368 Papaver somniferum HOM05D005253 ORTHO05D006058 3.2e-46 189.9 349 43.0
PSO782G3834 Papaver somniferum HOM05D005253 ORTHO05D006058 4.2e-46 189.5 349 39.8
ATR0691G224 Amborella trichopoda HOM05D005253 ORTHO05D006058 5.4e-46 189.1 309 42.4
MELO3C002054.2 Cucumis melo HOM05D005253 ORTHO05D006058 8.7e-44 181.8 366 39.1
A10p28550 Brassica napus HOM05D005253 ORTHO05D006058 1.5e-43 181.0 303 42.9
BolC9t59630H Brassica oleracea HOM05D005253 ORTHO05D006058 5.6e-43 179.1 325 37.8
Carub.0006s0700 Capsella rubella HOM05D005253 ORTHO05D006058 6.2e-42 175.6 334 46.1
Aqoxy3G03749 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 4.0e-41 172.9 347 39.8
CDE05G1733 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 4.0e-41 172.9 312 43.6
Atru.chr4.1592 Acer truncatum HOM05D005253 ORTHO05D006058 6.9e-41 172.2 350 45.1
Sabra04G0074900 Salix brachista HOM05D005253 ORTHO05D006058 1.4e-38 164.5 297 42.4
Nitab4.5_0001797g0020 Nicotiana tabacum HOM05D005253 ORTHO05D006058 7.9e-37 158.7 267 49.1
Sp6g34840 Schrenkiella parvula HOM05D005253 ORTHO05D006058 1.3e-36 157.9 361 34.1
Aa31LG3G18420 Aethionema arabicum HOM05D005253 ORTHO05D006058 3.6e-34 149.8 368 35.3
CsaV3_1G006260 Cucumis sativus L. HOM05D005253 ORTHO05D006058 9.0e-33 145.2 310 37.7
CDE02G3817 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 3.4e-32 143.3 318 36.8
Psat4g046080 Pisum sativum HOM05D005253 ORTHO05D006058 1.7e-31 141.0 357 34.7
HPP92_019902 Vanilla planifolia HOM05D005253 ORTHO05D006058 3.2e-30 136.7 309 37.9
Aqoxy3G00549 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 1.6e-29 134.4 349 33.8
arahy.Tifrunner.gnm1.ann1.U6KDHT Arachis hypogaea HOM05D005253 ORTHO05D006058 1.8e-28 131.0 314 39.2
Zm00001eb280850 Zea mays HOM05D005253 ORTHO05D006058 1.8e-28 131.0 318 33.0
Zm00001eb380690 Zea mays HOM05D005253 ORTHO05D006058 8.7e-28 128.6 310 33.5
HPP92_015550 Vanilla planifolia HOM05D005253 ORTHO05D006058 1.3e-26 124.8 313 33.2
arahy.Tifrunner.gnm1.ann1.4B3W67 Arachis hypogaea HOM05D005253 ORTHO05D006058 6.2e-26 122.5 314 36.3
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 1.0e-23 115.2 226 35.8
Actinidia04794 Actinidia chinensis HOM05D005253 ORTHO05D006058 4.9e-23 112.8 116 59.5
Peaxi162Scf00091g00143 Petunia axillaris HOM05D005253 ORTHO05D006058 3.2e-22 110.2 252 35.3
Actinidia04795 Actinidia chinensis HOM05D005253 ORTHO05D006058 7.9e-21 105.5 202 38.1
SEGI_36320 Sequoiadendron giganteum HOM05D005253 ORTHO05D006058 1.0e-20 105.1 352 34.4
Nn4g23536 Nelumbo nucifera HOM05D005253 ORTHO05D006058 1.6e-18 97.8 106 53.8
TPR.G28909 Trifolium pratense HOM05D005253 ORTHO05D006058 6.3e-18 95.9 87 65.5
Actinidia10441 Actinidia chinensis HOM05D005253 ORTHO05D006058 1.2e-16 91.7 113 52.2
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 1.2e-16 91.7 272 41.2
Oeu014549.1 Olea europaea HOM05D005253 ORTHO05D006058 3.4e-16 90.1 104 53.8
Duzib132G0740 Durio zibethinus HOM05D005253 ORTHO05D006058 5.9e-16 89.4 79 57.0
Os09g0476000 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 3.8e-15 86.7 276 30.8
RcHm_v2.0_Chr4g0401411 Rosa chinensis HOM05D034610 ORTHO05D006058 6.5e-15 85.9 80 63.8
Nn4g23537 Nelumbo nucifera HOM05D005253 ORTHO05D006058 1.1e-14 85.1 96 52.1
Zm00001eb315970 Zea mays HOM05D005253 ORTHO05D006058 3.2e-14 83.6 275 35.6
Os06g0284800 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 8.7e-12 75.5 306 27.8
Oeu051243.1 Olea europaea HOM05D005253 ORTHO05D006058 1.5e-11 74.7 104 45.2
Gohir.D13G101706 Gossypium hirsutum HOM05D005253 ORTHO05D006058 4.3e-11 73.2 75 60.0
BraA02t04942Z Brassica rapa HOM05D009919 ORTHO05D012044 1.4e-09 68.2 133 38.3
PSO063G4277 Papaver somniferum HOM05D005253 ORTHO05D006058 2.6e-08 63.9 105 41.0
CsaV3_2G035990 Cucumis sativus L. HOM05D000092 ORTHO05D020529 3.4e-08 63.5 95 38.9
BolC2t06302H Brassica oleracea HOM05D009919 ORTHO05D012044 1.3e-07 61.6 129 36.4
C02p03410 Brassica napus HOM05D009919 ORTHO05D012044 3.8e-07 60.1 126 36.5
SMO134G0145 Selaginella moellendorffii HOM05D025852 ORTHO05D006058 5.5e-06 56.2 319 29.2


User provided reference genes

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