Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g05150 Fragaria vesca HOM05D003549 ORTHO05D004223 5.8e-28 127.1 76 100.0
FAN18G4010 Fragaria x ananassa HOM05D003549 ORTHO05D004223 5.8e-28 127.1 76 100.0
FAN04G1549 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.3e-27 125.9 76 97.4
FAN08G2999 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.3e-27 125.9 76 97.4
FAN13G2761 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.3e-27 125.9 76 97.4
RcHm_v2.0_Chr7g0193821 Rosa chinensis HOM05D003549 ORTHO05D004223 3.7e-27 124.4 76 94.7
RcHm_v2.0_Chr7g0184521 Rosa chinensis HOM05D003549 ORTHO05D004223 1.4e-26 122.5 76 93.4
MD06G1177000 Malus domestica HOM05D003549 ORTHO05D004223 3.9e-24 114.4 71 94.4
CiPaw.11G028500 Carya illinoinensis HOM05D003549 ORTHO05D004223 6.6e-24 113.6 74 89.2
MD14G1183200 Malus domestica HOM05D003549 ORTHO05D004223 1.9e-23 112.1 71 94.4
Haze_07495 Corylus avellana HOM05D003549 ORTHO05D004223 1.2e-22 109.4 71 91.5
Prupe.5G175700 Prunus persica HOM05D003549 ORTHO05D004223 3.6e-22 107.8 71 91.5
Glyma.04G181200 Glycine max HOM05D003549 ORTHO05D004223 1.1e-21 106.3 71 88.7
Glyma.06G183700 Glycine max HOM05D003549 ORTHO05D004223 2.3e-21 105.1 71 87.3
Phvul.001G059000 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 2.3e-21 105.1 71 84.5
Glyma.14G134200 Glycine max HOM05D003549 ORTHO05D004223 3.1e-21 104.8 71 85.9
Peaxi162Scf00017g02716 Petunia axillaris HOM05D003549 ORTHO05D004223 3.1e-21 104.8 74 78.4
Nitab4.5_0000852g0140 Nicotiana tabacum HOM05D003549 ORTHO05D004223 4.0e-21 104.4 74 78.4
Nitab4.5_0003857g0060 Nicotiana tabacum HOM05D003549 ORTHO05D004223 4.0e-21 104.4 74 78.4
CiPaw.12G025200 Carya illinoinensis HOM05D003549 ORTHO05D004223 6.8e-21 103.6 74 77.0
Actinidia19094 Actinidia chinensis HOM05D003549 ORTHO05D004223 8.9e-21 103.2 71 87.3
Rhsim12G0163400 Rhododendron simsii HOM05D003549 ORTHO05D004223 8.9e-21 103.2 74 73.0
Phvul.009G179900 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 1.2e-20 102.8 71 84.5
Lj6g0023924 Lotus japonicus HOM05D003549 ORTHO05D004223 2.0e-20 102.1 71 81.7
Actinidia33056 Actinidia chinensis HOM05D000215 ORTHO05D003454 2.6e-20 101.7 72 84.7
Ca_16195_v3 Cicer arietinum L. HOM05D003549 ORTHO05D004223 2.6e-20 101.7 71 81.7
Cc04_g12860 Coffea canephora HOM05D003549 ORTHO05D004223 3.4e-20 101.3 74 81.1
CsaV3_1G008390 Cucumis sativus L. HOM05D003549 ORTHO05D004223 3.4e-20 101.3 72 84.7
Glyma.17G198800 Glycine max HOM05D003549 ORTHO05D004223 5.8e-20 100.5 69 82.6
Lj1g0007079 Lotus japonicus HOM05D003549 ORTHO05D004223 7.5e-20 100.1 71 81.7
ClCG01G013030 Citrullus lanatus HOM05D003549 ORTHO05D004223 1.3e-19 99.4 72 83.3
PSO017G2368 Papaver somniferum HOM05D003549 ORTHO05D004223 1.3e-19 99.4 71 77.5
TAR622G0024 Trochodendron aralioides HOM05D003549 ORTHO05D004223 1.3e-19 99.4 71 85.9
TAR622G1417 Trochodendron aralioides HOM05D003549 ORTHO05D004223 1.3e-19 99.4 71 85.9
Actinidia04982 Actinidia chinensis HOM05D000215 ORTHO05D003454 1.7e-19 99.0 71 84.5
Psat5g114160 Pisum sativum HOM05D003549 ORTHO05D004223 1.7e-19 99.0 71 81.7
HanXRQChr16g0517241 Helianthus annuus HOM05D003549 ORTHO05D004223 2.2e-19 98.6 75 82.7
Lalb_Chr08g0236401 Lupinus albus HOM05D003549 ORTHO05D004223 2.2e-19 98.6 71 81.7
TAR629G2438 Trochodendron aralioides HOM05D003549 ORTHO05D004223 2.2e-19 98.6 71 73.2
CSS0022405 Camellia sinensis var. sinensis HOM05D003549 ORTHO05D004223 2.9e-19 98.2 71 84.5
Duzib205G0517 Durio zibethinus HOM05D003549 ORTHO05D004223 3.7e-19 97.8 73 78.1
PSO478G4862 Papaver somniferum HOM05D003549 ORTHO05D004223 3.7e-19 97.8 71 76.1
Ciclev10023184m.g Citrus clementina HOM05D003549 ORTHO05D004223 4.9e-19 97.4 71 84.5
Solyc03g114170.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 4.9e-19 97.4 74 75.7
Sopen03g033240 Solanum pennellii HOM05D003549 ORTHO05D004223 4.9e-19 97.4 74 75.7
PGSC0003DMG400024492 Solanum tuberosum HOM05D003549 ORTHO05D004223 6.4e-19 97.1 74 75.7
GSVIVG01032498001 Vitis vinifera HOM05D003549 ORTHO05D004223 6.4e-19 97.1 69 79.7
Nn8g39923 Nelumbo nucifera HOM05D003549 ORTHO05D004223 1.1e-18 96.3 72 72.2
Hund03159 Selenicereus undatus HOM05D003549 ORTHO05D004223 2.4e-18 95.1 74 79.7
Medtr3g078130 Medicago truncatula HOM05D003549 ORTHO05D004223 3.2e-18 94.7 71 81.7
TWI81G0050 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 3.2e-18 94.7 72 73.6
TWI81G1057 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 3.2e-18 94.7 72 73.6
Potri.001G334600 Populus trichocarpa HOM05D003549 ORTHO05D004223 4.1e-18 94.4 67 83.6
Hma1.2p1_0176F.1_g077660 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 5.4e-18 94.0 71 80.3
Oeu000929.1 Olea europaea HOM05D003549 ORTHO05D004223 5.4e-18 94.0 75 76.0
THA.LOC104805767 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 5.4e-18 94.0 74 79.7
Thecc.03G009800 Theobroma cacao HOM05D003549 ORTHO05D004223 5.4e-18 94.0 73 78.1
Migut.D01775 Erythranthe guttata HOM05D003549 ORTHO05D004223 7.1e-18 93.6 74 78.4
Gohir.A07G060300 Gossypium hirsutum HOM05D003549 ORTHO05D004223 7.1e-18 93.6 76 75.0
Lsat_1_v5_gn_4_74920 Lactuca sativa HOM05D003549 ORTHO05D004223 7.1e-18 93.6 70 77.1
ClCG08G009420 Citrullus lanatus HOM05D003549 ORTHO05D004223 9.2e-18 93.2 72 83.3
MELO3C026538.2 Cucumis melo HOM05D003549 ORTHO05D004223 9.2e-18 93.2 72 83.3
CsaV3_6G031560 Cucumis sativus L. HOM05D003549 ORTHO05D004223 9.2e-18 93.2 72 83.3
Dinv09155 Davidia involucrata HOM05D003549 ORTHO05D004223 9.2e-18 93.2 71 77.5
Sed0023520 Sechium edule HOM05D003549 ORTHO05D004223 1.6e-17 92.4 72 81.9
MBI15_g31119_MAGBIO Magnolia biondii HOM05D003549 ORTHO05D004223 2.1e-17 92.0 74 78.4
Aqoxy3G00995 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 2.7e-17 91.7 74 70.3
SGA_v2.0_scaffold90G27958 Striga asiatica HOM05D000215 ORTHO05D003454 2.7e-17 91.7 74 63.5
TWI15G0885 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 2.7e-17 91.7 72 70.8
PSO832G2372 Papaver somniferum HOM05D003549 ORTHO05D004223 3.5e-17 91.3 73 71.2
SalBow2G1727 Salvia bowleyana HOM05D003549 ORTHO05D004223 3.5e-17 91.3 74 66.2
Solyc06g071390.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 3.5e-17 91.3 74 75.7
Sopen06g027670 Solanum pennellii HOM05D003549 ORTHO05D004223 3.5e-17 91.3 74 75.7
THA.LOC109116495 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 3.5e-17 91.3 71 74.6
PSO063G4497 Papaver somniferum HOM05D003549 ORTHO05D004223 4.6e-17 90.9 73 68.5
QL02p076964 Quercus lobata HOM05D003549 ORTHO05D004223 4.6e-17 90.9 69 73.9
TAR371G0468 Trochodendron aralioides HOM05D003549 ORTHO05D004223 4.6e-17 90.9 71 81.7
Aa31LG2G1940 Aethionema arabicum HOM05D003549 ORTHO05D004223 6.0e-17 90.5 72 76.4
CAN.G628.73 Capsicum annuum HOM05D003549 ORTHO05D004223 6.0e-17 90.5 74 74.3
Potri.017G066900 Populus trichocarpa HOM05D003549 ORTHO05D004223 6.0e-17 90.5 71 78.9
Sed0001837 Sechium edule HOM05D003549 ORTHO05D004223 6.0e-17 90.5 72 68.1
arahy.Tifrunner.gnm1.ann1.G4GSC6 Arachis hypogaea HOM05D003549 ORTHO05D004223 1.0e-16 89.7 71 80.3
arahy.Tifrunner.gnm1.ann1.TT1NYY Arachis hypogaea HOM05D003549 ORTHO05D004223 1.0e-16 89.7 71 80.3
Duzib084G0774 Durio zibethinus HOM05D003549 ORTHO05D004223 1.0e-16 89.7 73 72.6
Nn2g12408 Nelumbo nucifera HOM05D003549 ORTHO05D004223 1.0e-16 89.7 74 78.4
ECA232G0606 Erigeron canadensis HOM05D003549 ORTHO05D004223 1.3e-16 89.4 72 75.0
Peaxi162Scf00535g00046 Petunia axillaris HOM05D003549 ORTHO05D004223 1.3e-16 89.4 74 68.9
TPR.G30392 Trifolium pratense HOM05D003549 ORTHO05D004223 2.3e-16 88.6 79 74.7
Sc04g0001880 Simmondsia chinensis HOM05D003549 ORTHO05D004223 3.0e-16 88.2 71 78.9
TWI60G0590 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 3.0e-16 88.2 72 68.1
Dinv33505 Davidia involucrata HOM05D003549 ORTHO05D004223 6.6e-16 87.0 69 68.1
PGSC0003DMG400027096 Solanum tuberosum HOM05D003549 ORTHO05D004223 8.6e-16 86.7 74 73.0
BcaB03g15337 Brassica carinata HOM05D003549 ORTHO05D004223 1.1e-15 86.3 72 70.8
Cpa.g.sc124.38 Carica papaya HOM05D003549 ORTHO05D004223 1.1e-15 86.3 71 80.3
FAN02G2804 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.1e-15 86.3 69 75.4
FAN05G0330 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.1e-15 86.3 69 75.4
FAN09G2996 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.1e-15 86.3 69 75.4
FAN09G4496 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.1e-15 86.3 69 75.4
Manes.14G067300 Manihot esculenta HOM05D003549 ORTHO05D004223 1.5e-15 85.9 73 79.5
Zm00001eb332940 Zea mays HOM05D003549 ORTHO05D004223 1.5e-15 85.9 76 65.8
Ciclev10017382m.g Citrus clementina HOM05D003549 ORTHO05D004223 3.3e-15 84.7 69 76.8
THA.LOC104823782 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 3.3e-15 84.7 72 76.4
Peaxi162Scf00689g00329 Petunia axillaris HOM05D003549 ORTHO05D004223 4.3e-15 84.3 74 74.3
Sp5g19250 Schrenkiella parvula HOM05D003549 ORTHO05D004223 4.3e-15 84.3 72 73.6
CAN.G781.29 Capsicum annuum HOM05D003549 ORTHO05D004223 9.5e-15 83.2 74 71.6
AL2G18990 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 1.2e-14 82.8 73 75.3
Prupe.3G282400 Prunus persica HOM05D003549 ORTHO05D004223 1.2e-14 82.8 69 73.9
DCAR_021678 Daucus carota HOM05D003549 ORTHO05D004223 1.6e-14 82.4 68 77.9
FvH4_6g50520 Fragaria vesca HOM05D003549 ORTHO05D004223 1.6e-14 82.4 69 72.5
FAN14G1319 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.6e-14 82.4 69 72.5
AL8G14410 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 2.1e-14 82.0 72 75.0
CARHR049490 Cardamine hirsuta HOM05D003549 ORTHO05D004223 2.1e-14 82.0 72 70.8
Thhalv10022469m.g Eutrema salsugineum HOM05D003549 ORTHO05D004223 2.1e-14 82.0 72 72.2
unitig_26.g9627 Utricularia gibba HOM05D000915 ORTHO05D001662 2.1e-14 82.0 75 66.7
RcHm_v2.0_Chr2g0170951 Rosa chinensis HOM05D003549 ORTHO05D004223 4.7e-14 80.9 69 71.0
A07p32720 Brassica napus HOM05D003549 ORTHO05D004223 1.1e-13 79.7 69 72.5
C06p38930 Brassica napus HOM05D003549 ORTHO05D004223 1.1e-13 79.7 69 72.5
BolC6t38985H Brassica oleracea HOM05D003549 ORTHO05D004223 1.1e-13 79.7 69 72.5
BraA07t30898Z Brassica rapa HOM05D003549 ORTHO05D004223 1.1e-13 79.7 69 72.5
ECA246G5096 Erigeron canadensis HOM05D003549 ORTHO05D004223 3.1e-13 78.2 64 78.1
Carub.0003s3029 Capsella rubella HOM05D003549 ORTHO05D004223 4.0e-13 77.8 75 70.7
Atru.chr9.2446 Acer truncatum HOM05D003549 ORTHO05D004223 5.2e-13 77.4 47 83.0
PGR083G2145 Punica granatum HOM05D003549 ORTHO05D004223 5.2e-13 77.4 71 73.2
Aqoxy3G00999 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 6.8e-13 77.0 74 70.3
Manes.06G103400 Manihot esculenta HOM05D003549 ORTHO05D004223 6.8e-13 77.0 46 84.8
Sc12g0005420 Simmondsia chinensis HOM05D003549 ORTHO05D004223 6.8e-13 77.0 71 74.6
Os01g0273000 Oryza sativa ssp. japonica HOM05D003549 ORTHO05D004223 8.9e-13 76.6 75 65.3
Hma1.2p1_0802F.1_g220520 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 1.2e-12 76.3 67 62.7
ECA247G2394 Erigeron canadensis HOM05D003549 ORTHO05D004223 1.5e-12 75.9 64 76.6
DCAR_021565 Daucus carota HOM05D003549 ORTHO05D004223 2.0e-12 75.5 77 70.1
Duzib068G0952 Durio zibethinus HOM05D003549 ORTHO05D004223 2.0e-12 75.5 79 67.1
COL.COLO4_34052 Corchorus olitorius HOM05D003549 ORTHO05D004223 3.4e-12 74.7 73 72.6
HPP92_002194 Vanilla planifolia HOM05D003549 ORTHO05D004223 5.8e-12 73.9 72 68.1
CAN.G208.13 Capsicum annuum HOM05D003549 ORTHO05D004223 7.6e-12 73.6 49 75.5
Rhsim08G0170600 Rhododendron simsii HOM05D003549 ORTHO05D004223 7.6e-12 73.6 74 58.1
TPR.G37556 Trifolium pratense HOM05D003549 ORTHO05D004223 9.9e-12 73.2 72 72.2
CAN.G650.26 Capsicum annuum HOM05D003549 ORTHO05D004223 1.3e-11 72.8 49 75.5
QL10p012114 Quercus lobata HOM05D003549 ORTHO05D004223 1.3e-11 72.8 126 48.4
AT5G45010 Arabidopsis thaliana HOM05D003549 ORTHO05D004223 1.7e-11 72.4 72 68.1
BcaB05g23601 Brassica carinata HOM05D003549 ORTHO05D004223 2.2e-11 72.0 73 57.5
Cpa.g.sc1914.1 Carica papaya HOM05D003549 ORTHO05D004223 2.9e-11 71.6 43 81.4
CANSAT64G1109 Cannabis sativa HOM05D003549 ORTHO05D004223 4.9e-11 70.9 69 68.1
Eucgr.K02857 Eucalyptus grandis HOM05D003549 ORTHO05D004223 8.4e-11 70.1 67 73.1
SalBow5G5409 Salvia bowleyana HOM05D003549 ORTHO05D004223 1.1e-10 69.7 73 60.3
HPP92_011135 Vanilla planifolia HOM05D003549 ORTHO05D004223 2.4e-10 68.6 106 47.2
Cfa019097 Carpinus fangiana HOM05D003549 ORTHO05D004223 4.1e-10 67.8 122 48.4
Mapoly0025s0126 Marchantia polymorpha HOM05D003549 ORTHO05D004223 4.1e-10 67.8 66 59.1
Hma1.2p1_0967F.1_g242260 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 5.4e-10 67.4 79 53.2
BolC2t09796H Brassica oleracea HOM05D003549 ORTHO05D004223 7.1e-10 67.0 74 56.8
Lsat_1_v5_gn_1_26640 Lactuca sativa HOM05D000122 ORTHO05D004223 7.1e-10 67.0 75 65.3
Lalb_Chr11g0071151 Lupinus albus HOM05D003549 ORTHO05D004223 7.1e-10 67.0 71 67.6
A02p23950 Brassica napus HOM05D003549 ORTHO05D004223 1.6e-09 65.9 74 67.6
Gohir.D12G274100 Gossypium hirsutum HOM05D003549 ORTHO05D004223 1.6e-09 65.9 72 63.9
Gorai.008G294500 Gossypium raimondii HOM05D003549 ORTHO05D004223 1.6e-09 65.9 72 63.9
EL10Ac5g10777 Beta vulgaris HOM05D003549 ORTHO05D004223 2.1e-09 65.5 74 64.9
AUR62036487 Chenopodium quinoa HOM05D003549 ORTHO05D004223 2.1e-09 65.5 74 63.5
AUR62008230 Chenopodium quinoa HOM05D003549 ORTHO05D004223 2.7e-09 65.1 74 64.9
unitig_749.g13471 Utricularia gibba HOM05D003549 ORTHO05D004223 2.7e-09 65.1 75 64.0
C02p37800 Brassica napus HOM05D003549 ORTHO05D004223 4.6e-09 64.3 74 66.2
HanXRQChr02g0037231 Helianthus annuus HOM05D003549 ORTHO05D004223 6.0e-09 63.9 75 64.0
SMO139G0002 Selaginella moellendorffii HOM05D003549 ORTHO05D004223 7.8e-09 63.5 72 59.7
Aqoxy3G02997 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 1.0e-08 63.2 70 62.9
AT1G64750 Arabidopsis thaliana HOM05D003549 ORTHO05D004223 1.0e-08 63.2 115 47.0
AUR62037088 Chenopodium quinoa HOM05D003549 ORTHO05D004223 1.7e-08 62.4 74 62.2
SMO145G0027 Selaginella moellendorffii HOM05D003549 ORTHO05D004223 2.3e-08 62.0 69 60.9
CDE10G0156 Ceratophyllum demersum HOM05D003549 ORTHO05D004223 3.0e-08 61.6 73 58.9
Peaxi162Scf00548g00225 Petunia axillaris HOM05D003549 ORTHO05D004223 5.1e-08 60.8 49 61.2
Ah.13g075720 Amaranthus hybridus HOM05D003549 ORTHO05D004223 6.6e-08 60.5 75 64.0
CBR_g8660 Chara braunii HOM05D003549 ORTHO05D004223 1.5e-07 59.3 71 53.5
DCAR_016492 Daucus carota HOM05D003549 ORTHO05D004223 1.9e-07 58.9 86 55.8
ECA246G0614 Erigeron canadensis HOM05D001816 ORTHO05D002001 1.9e-07 58.9 42 69.0
Sopen12g011080 Solanum pennellii HOM05D003549 ORTHO05D004223 1.9e-07 58.9 45 66.7
CDE05G3179 Ceratophyllum demersum HOM05D003549 ORTHO05D004223 3.3e-07 58.2 72 51.4
BraA02t07390Z Brassica rapa HOM05D003549 ORTHO05D004223 4.3e-07 57.8 90 54.4
CDE10G1218 Ceratophyllum demersum HOM05D003549 ORTHO05D004223 7.3e-07 57.0 65 58.5
AagrBONN_evm.TU.Sc2ySwM_117.1875 Anthoceros agrestis HOM05D003549 ORTHO05D004223 9.6e-07 56.6 70 51.4
Gohir.D07G065000 Gossypium hirsutum HOM05D003549 ORTHO05D004223 9.6e-07 56.6 49 63.3
Gorai.001G068500 Gossypium raimondii HOM05D003549 ORTHO05D004223 9.6e-07 56.6 49 63.3
Sopen04g010620 Solanum pennellii HOM05D037505 ORTHO05D004223 1.6e-06 55.8 44 86.4
ATR0752G058 Amborella trichopoda HOM05D003549 ORTHO05D004223 3.6e-06 54.7 78 57.7
Hund12012 Selenicereus undatus HOM05D003549 ORTHO05D004223 6.2e-06 53.9 72 56.9
CARHR055420 Cardamine hirsuta HOM05D003549 ORTHO05D004223 8.1e-06 53.5 114 42.1


User provided reference genes

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