Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G3928 Fragaria x ananassa HOM05D006993 ORTHO05D008336 2.3e-117 425.6 222 100.0
FAN08G3673 Fragaria x ananassa HOM05D006993 ORTHO05D008336 5.5e-111 404.4 222 95.0
FvH4_5g27060 Fragaria vesca HOM05D006993 ORTHO05D008336 1.0e-109 400.2 222 94.1
FAN04G3061 Fragaria x ananassa HOM05D006993 ORTHO05D008336 2.5e-100 369.0 222 88.7
FAN13G2105 Fragaria x ananassa HOM05D006993 ORTHO05D008336 2.4e-98 362.5 222 87.8
RcHm_v2.0_Chr7g0218061 Rosa chinensis HOM05D006993 ORTHO05D008336 1.3e-88 330.1 222 82.0
MD00G1144800 Malus domestica HOM05D006993 ORTHO05D008336 6.8e-69 264.6 229 69.0
GSVIVG01006115001 Vitis vinifera HOM05D006993 ORTHO05D008336 1.2e-60 237.3 168 75.0
Prupe.5G011000 Prunus persica HOM05D006993 ORTHO05D008336 1.7e-59 233.4 171 74.3
TAR626G0971 Trochodendron aralioides HOM05D006993 ORTHO05D008336 9.5e-55 217.6 169 69.2
Atru.chr6.3467 Acer truncatum HOM05D006993 ORTHO05D008336 4.7e-54 215.3 215 61.4
Actinidia23138 Actinidia chinensis HOM05D006993 ORTHO05D008336 4.7e-54 215.3 175 68.0
Manes.13G058300 Manihot esculenta HOM05D006993 ORTHO05D008336 1.8e-53 213.4 172 65.7
Lsat_1_v5_gn_9_15700 Lactuca sativa HOM05D006993 ORTHO05D008336 1.2e-52 210.7 178 65.7
Ciclev10016771m.g Citrus clementina HOM05D006993 ORTHO05D008336 2.0e-52 209.9 186 64.0
Gohir.A11G146100 Gossypium hirsutum HOM05D006993 ORTHO05D008336 2.0e-52 209.9 178 64.6
Gorai.007G162900 Gossypium raimondii HOM05D006993 ORTHO05D008336 2.0e-52 209.9 178 64.6
Medtr8g028100 Medicago truncatula HOM05D006993 ORTHO05D008336 7.5e-52 208.0 161 71.4
TPR.G5057 Trifolium pratense HOM05D006993 ORTHO05D008336 7.5e-52 208.0 161 73.3
Lj3g0006688 Lotus japonicus HOM05D006993 ORTHO05D008336 1.3e-51 207.2 160 68.8
Thecc.01G203600 Theobroma cacao HOM05D006993 ORTHO05D008336 1.3e-51 207.2 197 59.4
Lalb_Chr17g0342261 Lupinus albus HOM05D006993 ORTHO05D008336 1.7e-51 206.8 168 67.9
QL09p044784 Quercus lobata HOM05D006993 ORTHO05D008336 2.2e-51 206.5 172 68.0
CANSAT11G1969 Cannabis sativa HOM05D006993 ORTHO05D008336 4.9e-51 205.3 166 68.1
ATR0751G064 Amborella trichopoda HOM05D006993 ORTHO05D008336 6.4e-51 204.9 164 66.5
Oeu013422.3 Olea europaea HOM05D006993 ORTHO05D008336 6.4e-51 204.9 197 58.9
Duzib211G0651 Durio zibethinus HOM05D006993 ORTHO05D008336 8.3e-51 204.5 191 60.2
Duzib138G1606 Durio zibethinus HOM05D006993 ORTHO05D008336 1.1e-50 204.1 237 51.5
CsaV3_5G035360 Cucumis sativus L. HOM05D006993 ORTHO05D008336 3.2e-50 202.6 171 63.7
MD15G1141400 Malus domestica HOM05D006993 ORTHO05D008336 3.2e-50 202.6 136 76.5
MELO3C012348.2 Cucumis melo HOM05D006993 ORTHO05D008336 4.1e-50 202.2 171 64.9
PSO675G6922 Papaver somniferum HOM05D006993 ORTHO05D008336 9.2e-50 201.1 159 64.8
Sed0005772 Sechium edule HOM05D006993 ORTHO05D008336 9.2e-50 201.1 171 64.3
CSS0002802 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 1.6e-49 200.3 184 60.9
CSS0020795 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 2.0e-49 199.9 175 63.4
Cpa.g.sc8.8 Carica papaya HOM05D006993 ORTHO05D008336 2.0e-49 199.9 166 68.7
MSTRG.18520 Avicennia marina HOM05D006993 ORTHO05D008336 1.3e-48 197.2 163 65.0
Potri.014G172800 Populus trichocarpa HOM05D006993 ORTHO05D008336 1.3e-48 197.2 163 65.6
TWI18G0796 Tripterygium wilfordii HOM05D006993 ORTHO05D008336 1.3e-48 197.2 172 64.5
CSS0001652 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 2.3e-48 196.4 171 64.9
Cfa010616 Carpinus fangiana HOM05D006993 ORTHO05D008336 2.3e-48 196.4 156 67.9
CiPaw.13G058900 Carya illinoinensis HOM05D006993 ORTHO05D008336 2.3e-48 196.4 158 67.7
Solyc09g018890.3 Solanum lycopersicum HOM05D006993 ORTHO05D008336 3.9e-48 195.7 187 62.0
COL.COLO4_19719 Corchorus olitorius HOM05D006993 ORTHO05D008336 8.6e-48 194.5 230 52.6
Migut.D00756 Erythranthe guttata HOM05D006993 ORTHO05D008336 1.1e-47 194.1 164 64.6
Sopen09g012650 Solanum pennellii HOM05D006993 ORTHO05D008336 1.1e-47 194.1 189 60.8
CSS0028614 Camellia sinensis var. sinensis HOM05D006993 ORTHO05D008336 1.5e-47 193.7 184 60.3
Nitab4.5_0009028g0040 Nicotiana tabacum HOM05D006993 ORTHO05D008336 1.9e-47 193.4 173 65.3
Aqoxy4G02329 Aquilegia oxysepala HOM05D006993 ORTHO05D008336 4.3e-47 192.2 162 62.3
DCAR_018599 Daucus carota HOM05D000190 ORTHO05D008336 4.3e-47 192.2 163 63.8
PSO541G2665 Papaver somniferum HOM05D006993 ORTHO05D008336 5.6e-47 191.8 163 61.3
Peaxi162Scf12724g00016 Petunia axillaris HOM05D006993 ORTHO05D008336 5.6e-47 191.8 165 66.1
vmacro02850 Vaccinium macrocarpon HOM05D006993 ORTHO05D008336 5.6e-47 191.8 179 59.8
Gohir.D07G168900 Gossypium hirsutum HOM05D006993 ORTHO05D008336 9.5e-47 191.0 192 56.8
Oeu049571.1 Olea europaea HOM05D006993 ORTHO05D008336 1.2e-46 190.7 195 58.5
CDE03G0427 Ceratophyllum demersum HOM05D006993 ORTHO05D008336 4.7e-46 188.7 161 65.2
Sabra14G0132300 Salix brachista HOM05D006993 ORTHO05D008336 1.0e-45 187.6 165 63.6
Glyma.07G059600 Glycine max HOM05D006993 ORTHO05D008336 3.1e-45 186.0 179 60.9
Rhsim13G0056200 Rhododendron simsii HOM05D006570 ORTHO05D008193 4.0e-45 185.7 176 59.1
Nn1g08444 Nelumbo nucifera HOM05D006993 ORTHO05D008336 5.2e-45 185.3 169 61.5
Ca_23580_v3 Cicer arietinum L. HOM05D006993 ORTHO05D008336 1.2e-44 184.1 158 65.8
Gorai.N000700 Gossypium raimondii HOM05D006993 ORTHO05D008336 1.2e-44 184.1 194 54.6
CDE06G2320 Ceratophyllum demersum HOM05D006993 ORTHO05D008336 1.5e-44 183.7 155 63.9
Thhalv10002670m.g Eutrema salsugineum HOM05D006993 ORTHO05D008336 1.5e-44 183.7 195 56.9
CAN.G3.14 Capsicum annuum HOM05D006993 ORTHO05D008336 2.0e-44 183.3 167 64.1
Eucgr.H00675 Eucalyptus grandis HOM05D006993 ORTHO05D008336 7.5e-44 181.4 162 61.7
Glyma.16G028500 Glycine max HOM05D006993 ORTHO05D008336 7.5e-44 181.4 161 65.2
PGSC0003DMG400020288 Solanum tuberosum HOM05D006993 ORTHO05D008336 9.8e-44 181.0 154 65.6
HanXRQChr08g0230791 Helianthus annuus HOM05D006993 ORTHO05D008336 1.7e-43 180.3 185 56.8
Lj2A1109T68 Lonicera japonica HOM05D006993 ORTHO05D008336 1.7e-43 180.3 144 66.7
BcaC06g35821 Brassica carinata HOM05D006993 ORTHO05D008336 2.9e-43 179.5 153 64.1
BolC7t41517H Brassica oleracea HOM05D006993 ORTHO05D008336 2.9e-43 179.5 153 64.1
AL3G41710 Arabidopsis lyrata HOM05D006993 ORTHO05D008336 3.7e-43 179.1 193 55.4
A07p06910 Brassica napus HOM05D006993 ORTHO05D008336 3.7e-43 179.1 153 63.4
BraA07t28482Z Brassica rapa HOM05D006993 ORTHO05D008336 3.7e-43 179.1 153 63.4
VMungo0331G1491 Vigna mungo HOM05D006993 ORTHO05D008336 3.7e-43 179.1 161 63.4
arahy.Tifrunner.gnm1.ann1.RC1IE0 Arachis hypogaea HOM05D006993 ORTHO05D008336 6.4e-43 178.3 167 62.3
C07p10500 Brassica napus HOM05D006993 ORTHO05D008336 1.1e-42 177.6 153 63.4
AT2G04039 Arabidopsis thaliana HOM05D006993 ORTHO05D008336 1.9e-42 176.8 196 55.6
Phvul.010G110000 Phaseolus vulgaris HOM05D006993 ORTHO05D008336 2.4e-42 176.4 158 64.6
Cc01_g15720 Coffea canephora HOM05D006993 ORTHO05D008336 3.2e-42 176.0 182 56.0
ECA247G3631 Erigeron canadensis HOM05D006993 ORTHO05D008336 5.4e-42 175.3 178 57.9
PGR083G2302 Punica granatum HOM05D006993 ORTHO05D008336 7.0e-42 174.9 193 52.8
Potri.002G217400 Populus trichocarpa HOM05D006993 ORTHO05D008336 4.6e-41 172.2 162 59.3
EL10Ac5g10566 Beta vulgaris HOM05D006993 ORTHO05D008336 1.0e-40 171.0 186 53.2
Duzib133G0497 Durio zibethinus HOM05D006993 ORTHO05D008336 1.0e-40 171.0 110 77.3
Aa31sc249G30 Aethionema arabicum HOM05D006993 ORTHO05D008336 1.3e-40 170.6 153 60.1
AUR62028621 Chenopodium quinoa HOM05D006993 ORTHO05D008336 1.3e-40 170.6 174 55.7
SalBow2G0576 Salvia bowleyana HOM05D006993 ORTHO05D008336 5.0e-40 168.7 148 61.5
BcaB06g26751 Brassica carinata HOM05D006993 ORTHO05D008336 3.3e-39 166.0 160 60.6
AUR62008046 Chenopodium quinoa HOM05D006993 ORTHO05D008336 5.6e-39 165.2 186 49.5
MBI15_g35689_MAGBIO Magnolia biondii HOM05D006993 ORTHO05D008336 7.3e-39 164.9 161 58.4
Sp3g23040 Schrenkiella parvula HOM05D006993 ORTHO05D008336 2.1e-38 163.3 119 70.6
CARHR101970 Cardamine hirsuta HOM05D006993 ORTHO05D008336 3.6e-38 162.5 124 68.5
Zm00001eb108910 Zea mays HOM05D006993 ORTHO05D008336 1.8e-37 160.2 174 51.7
TWI36G0749 Tripterygium wilfordii HOM05D006993 ORTHO05D008336 1.5e-36 157.1 134 63.4
Carub.0003s2586 Capsella rubella HOM05D006993 ORTHO05D008336 2.2e-35 153.3 107 72.9
SalBow2G2967 Salvia bowleyana HOM05D006993 ORTHO05D008336 2.2e-35 153.3 187 49.7
SalBow6G6587 Salvia bowleyana HOM05D006993 ORTHO05D008336 2.2e-35 153.3 149 60.4
Ah.11g050660 Amaranthus hybridus HOM05D006993 ORTHO05D008336 2.9e-35 152.9 203 46.3
unitig_736.g22974 Utricularia gibba HOM05D006993 ORTHO05D008336 4.9e-35 152.1 124 62.9
Nitab4.5_0005967g0020 Nicotiana tabacum HOM05D006993 ORTHO05D008336 1.9e-34 150.2 167 56.9
Gohir.A07G162350 Gossypium hirsutum HOM05D006993 ORTHO05D008336 2.4e-34 149.8 183 49.2
Os07g0607800 Oryza sativa ssp. japonica HOM05D006993 ORTHO05D008336 3.2e-34 149.4 107 64.5
arahy.Tifrunner.gnm1.ann1.6DX8AG Arachis hypogaea HOM05D006993 ORTHO05D008336 2.1e-33 146.7 89 79.8
ClCG05G021810 Citrullus lanatus HOM05D006993 ORTHO05D008336 3.5e-33 146.0 145 57.9
Zm00001eb327210 Zea mays HOM05D006993 ORTHO05D008336 1.3e-32 144.1 157 49.0
AagrBONN_evm.TU.Sc2ySwM_344.1609 Anthoceros agrestis HOM05D006993 ORTHO05D008336 6.0e-25 118.6 116 50.0
Psat4g158880 Pisum sativum HOM05D006993 ORTHO05D008336 6.0e-25 118.6 109 63.3
Pp3c2_17900 Physcomitrium patens HOM05D006993 ORTHO05D008336 1.2e-22 110.9 111 50.5
SMO111G0038 Selaginella moellendorffii HOM05D006993 ORTHO05D008336 1.6e-22 110.5 102 51.0
Mapoly0043s0057 Marchantia polymorpha HOM05D006993 ORTHO05D008336 6.2e-22 108.6 109 51.4
Ca_23571_v3 Cicer arietinum L. HOM05D006993 ORTHO05D008336 6.0e-17 92.0 110 55.5
CBR_g51823 Chara braunii HOM05D006993 ORTHO05D008336 3.1e-13 79.7 72 52.8
Gohir.D11G152300 Gossypium hirsutum HOM05D006993 ORTHO05D008336 6.4e-11 72.0 120 41.7
Haze_03547 Corylus avellana HOM05D006993 ORTHO05D008336 5.4e-10 68.9 95 53.7
RcHm_v2.0_Chr2g0176741 Rosa chinensis HOM05D000557 ORTHO05D002315 9.3e-10 68.2 57 70.2
FvH4_6g54460 Fragaria vesca HOM05D000557 ORTHO05D002315 1.0e-08 64.7 56 67.9
FAN09G4469 Fragaria x ananassa HOM05D000557 ORTHO05D002315 1.0e-08 64.7 56 67.9
FAN14G1712 Fragaria x ananassa HOM05D000557 ORTHO05D002315 1.0e-08 64.7 56 67.9
MD09G1000800 Malus domestica HOM05D000557 ORTHO05D002315 5.1e-08 62.4 56 67.9
PGR142G0869 Punica granatum HOM05D000557 ORTHO05D002315 8.7e-08 61.6 56 66.1
GSVIVG01032942001 Vitis vinifera HOM05D000557 ORTHO05D002315 1.5e-07 60.8 56 66.1
MD17G1003500 Malus domestica HOM05D000557 ORTHO05D002315 1.9e-07 60.5 56 66.1
Prupe.3G315500 Prunus persica HOM05D000557 ORTHO05D002315 2.5e-07 60.1 56 64.3
QL02p068153 Quercus lobata HOM05D000557 ORTHO05D002315 2.5e-07 60.1 57 64.9
THA.LOC104815380 Tarenaya hassleriana HOM05D006993 ORTHO05D008336 3.3e-07 59.7 74 50.0
Ca_23582_v3 Cicer arietinum L. HOM05D000001 ORTHO05D000003 1.6e-06 57.4 43 69.8
ClCG05G012430 Citrullus lanatus HOM05D000557 ORTHO05D002315 8.1e-06 55.1 56 60.7
MELO3C014752.2 Cucumis melo HOM05D000557 ORTHO05D002315 8.1e-06 55.1 56 60.7


User provided reference genes

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