Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G3856 Fragaria x ananassa HOM05D008195 ORTHO05D000743 2.6e-189 665.2 330 100.0
FvH4_5g13940 Fragaria vesca HOM05D008195 ORTHO05D000743 3.1e-155 552.0 265 99.6
FAN08G3156 Fragaria x ananassa HOM05D008195 ORTHO05D000743 5.4e-147 524.6 267 95.1
RcHm_v2.0_Chr7g0183021 Rosa chinensis HOM05D007909 ORTHO05D000743 1.7e-55 220.7 248 54.0
FAN17G0179 Fragaria x ananassa HOM05D000009 ORTHO05D000008 2.9e-52 209.9 246 52.0
FvH4_5g13930 Fragaria vesca HOM05D007909 ORTHO05D000743 5.0e-52 209.1 242 52.9
FAN08G2750 Fragaria x ananassa HOM05D007909 ORTHO05D000743 1.9e-51 207.2 243 53.1
FvH4_4g13540 Fragaria vesca HOM05D007909 ORTHO05D000743 3.2e-51 206.5 220 54.5
FAN18G3687 Fragaria x ananassa HOM05D007909 ORTHO05D000743 1.2e-50 204.5 242 52.1
MD06G1202200 Malus domestica HOM05D007909 ORTHO05D000743 2.9e-39 166.8 214 44.4
Prupe.5G204200 Prunus persica HOM05D007909 ORTHO05D000743 2.3e-36 157.1 255 43.1
FAN12G1787 Fragaria x ananassa HOM05D008195 ORTHO05D000743 2.5e-35 153.7 157 58.0
Potri.014G040100 Populus trichocarpa HOM05D007909 ORTHO05D000743 2.8e-34 150.2 300 36.3
Haze_07714 Corylus avellana HOM05D007909 ORTHO05D000743 6.2e-34 149.1 259 40.5
Cfa019304 Carpinus fangiana HOM05D001093 ORTHO05D000743 1.0e-33 148.3 227 41.0
QL03p074219 Quercus lobata HOM05D007909 ORTHO05D000743 2.6e-32 143.7 301 35.9
QL03p074129 Quercus lobata HOM05D007909 ORTHO05D000743 4.4e-32 142.9 301 35.9
QL12p030770 Quercus lobata HOM05D007909 ORTHO05D000743 1.3e-31 141.4 319 36.4
QL03p074255 Quercus lobata HOM05D007909 ORTHO05D000743 1.7e-31 141.0 319 35.7
Haze_07687 Corylus avellana HOM05D007909 ORTHO05D000743 1.9e-30 137.5 290 35.2
CANSAT80G0598 Cannabis sativa HOM05D007909 ORTHO05D000743 4.1e-30 136.3 197 41.6
TAR264G0006 Trochodendron aralioides HOM05D001093 ORTHO05D000743 4.1e-30 136.3 248 36.7
Sabra14G0029200 Salix brachista HOM05D007909 ORTHO05D000743 4.6e-29 132.9 347 30.5
Thecc.03G101000 Theobroma cacao HOM05D007909 ORTHO05D000743 6.0e-29 132.5 269 34.6
CiPaw.12G008400 Carya illinoinensis HOM05D007909 ORTHO05D000743 3.0e-28 130.2 213 40.4
COL.COLO4_06865 Corchorus olitorius HOM05D007909 ORTHO05D000743 6.6e-28 129.0 233 36.1
Ca_26164_v3 Cicer arietinum L. HOM05D001093 ORTHO05D000743 1.5e-27 127.9 193 43.0
Lj1g0000797 Lotus japonicus HOM05D007909 ORTHO05D000743 4.3e-27 126.3 197 42.1
TWI60G0473 Tripterygium wilfordii HOM05D007909 ORTHO05D000743 4.3e-27 126.3 200 38.0
Cfa019324 Carpinus fangiana HOM05D007909 ORTHO05D000743 9.5e-27 125.2 165 44.2
QL03p074381 Quercus lobata HOM05D007909 ORTHO05D000743 2.1e-26 124.0 207 40.1
CANSAT80G0086 Cannabis sativa HOM05D007909 ORTHO05D000743 3.6e-26 123.2 252 33.7
Dinv17406 Davidia involucrata HOM05D001093 ORTHO05D000743 8.1e-26 122.1 210 39.5
Manes.06G085200 Manihot esculenta HOM05D007909 ORTHO05D010605 1.4e-25 121.3 198 40.4
Glyma.06G203100 Glycine max HOM05D007909 ORTHO05D000743 2.0e-24 117.5 244 36.9
CSS0005519 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 3.4e-24 116.7 225 35.1
Dinv22785 Davidia involucrata HOM05D001093 ORTHO05D000743 3.4e-24 116.7 212 40.1
CsaV3_1G005950 Cucumis sativus L. HOM05D007909 ORTHO05D000743 7.5e-24 115.5 163 40.5
MELO3C002025.2 Cucumis melo HOM05D007909 ORTHO05D000743 2.2e-23 114.0 162 40.7
QL03p074169 Quercus lobata HOM05D007909 ORTHO05D000743 2.2e-23 114.0 190 40.0
MD14G1211300 Malus domestica HOM05D007909 ORTHO05D000743 2.9e-23 113.6 126 49.2
TAR629G2812 Trochodendron aralioides HOM05D001093 ORTHO05D000743 2.9e-23 113.6 174 39.1
Duzib205G0904 Durio zibethinus HOM05D007909 ORTHO05D000743 3.7e-23 113.2 194 38.1
Actinidia35035 Actinidia chinensis HOM05D001093 ORTHO05D000743 8.3e-23 112.1 278 32.7
arahy.Tifrunner.gnm1.ann1.7R0RVH Arachis hypogaea HOM05D001093 ORTHO05D000743 1.1e-22 111.7 240 33.8
TAR629G0348 Trochodendron aralioides HOM05D001391 ORTHO05D000743 1.4e-22 111.3 249 34.1
Gohir.A12G182333 Gossypium hirsutum HOM05D008195 ORTHO05D000743 2.4e-22 110.5 243 35.4
TWI60G1066 Tripterygium wilfordii HOM05D001093 ORTHO05D000743 2.4e-22 110.5 201 37.3
Psat0s231g0040 Pisum sativum HOM05D001093 ORTHO05D000743 4.1e-22 109.8 191 38.2
Sed0028074 Sechium edule HOM05D007909 ORTHO05D000743 5.4e-22 109.4 167 37.1
Gorai.008G198700 Gossypium raimondii HOM05D008195 ORTHO05D000743 7.1e-22 109.0 196 37.2
Medtr3g025330 Medicago truncatula HOM05D001093 ORTHO05D010605 1.2e-21 108.2 240 34.2
Gohir.D12G185300 Gossypium hirsutum HOM05D008195 ORTHO05D000743 1.6e-21 107.8 196 36.7
SGA_v2.0_scaffold313G48311 Striga asiatica HOM05D001093 ORTHO05D000743 1.6e-21 107.8 192 40.6
Atru.chr9.429 Acer truncatum HOM05D007909 ORTHO05D000743 2.7e-21 107.1 205 36.1
Duzib205G1796 Durio zibethinus HOM05D001093 ORTHO05D010605 4.6e-21 106.3 150 41.3
QL10p019356 Quercus lobata HOM05D001093 ORTHO05D010605 6.0e-21 105.9 171 38.6
Glyma.04G163100 Glycine max HOM05D007909 ORTHO05D000743 1.7e-20 104.4 238 34.5
Lalb_Chr23g0273991 Lupinus albus HOM05D001093 ORTHO05D000743 5.1e-20 102.8 189 34.4
Lj5A103G64 Lonicera japonica HOM05D001093 ORTHO05D000743 8.6e-20 102.1 202 33.7
TPR.G19667 Trifolium pratense HOM05D007909 ORTHO05D000743 8.6e-20 102.1 225 33.8
Glyma.06G202900 Glycine max HOM05D007909 ORTHO05D000743 1.9e-19 100.9 194 35.1
Atru.chr13.1216 Acer truncatum HOM05D007909 ORTHO05D000743 2.5e-19 100.5 204 33.3
Actinidia16122 Actinidia chinensis HOM05D001093 ORTHO05D000743 2.5e-19 100.5 157 40.1
arahy.Tifrunner.gnm1.ann1.ER6SHV Arachis hypogaea HOM05D008195 ORTHO05D000743 5.6e-19 99.4 259 31.3
Duzib084G0387 Durio zibethinus HOM05D001093 ORTHO05D000743 7.3e-19 99.0 132 42.4
RcHm_v2.0_Chr4g0414551 Rosa chinensis HOM05D008195 ORTHO05D000743 1.2e-18 98.2 91 60.4
Rhsim08G0146400 Rhododendron simsii HOM05D001093 ORTHO05D000743 1.6e-18 97.8 151 37.7
EL10Ac5g11120 Beta vulgaris HOM05D015602 ORTHO05D006373 3.6e-18 96.7 221 31.7
Rhsim12G0151100 Rhododendron simsii HOM05D001093 ORTHO05D000743 3.6e-18 96.7 195 34.9
Phvul.009G191900 Phaseolus vulgaris HOM05D007909 ORTHO05D000743 4.7e-18 96.3 246 33.3
Sc12g0006650 Simmondsia chinensis HOM05D001093 ORTHO05D000743 1.4e-17 94.7 175 36.0
Cc00_g03840 Coffea canephora HOM05D001093 ORTHO05D000743 1.8e-17 94.4 142 41.5
vmacro16499 Vaccinium macrocarpon HOM05D001093 ORTHO05D000743 3.1e-17 93.6 207 33.8
Sopen06g021820 Solanum pennellii HOM05D008195 ORTHO05D000743 6.8e-17 92.4 189 33.9
QL10p019376 Quercus lobata HOM05D000003 ORTHO05D000004 1.5e-16 91.3 243 29.2
VMungo1309G0161 Vigna mungo HOM05D007909 ORTHO05D000743 1.5e-16 91.3 137 38.7
Solyc06g066200.2 Solanum lycopersicum HOM05D008195 ORTHO05D000743 2.0e-16 90.9 189 33.3
Hund02591 Selenicereus undatus HOM05D001093 ORTHO05D000743 4.4e-16 89.7 173 35.3
Phvul.009G191600 Phaseolus vulgaris HOM05D007909 ORTHO05D000743 5.8e-16 89.4 134 40.3
Ah.11g047850 Amaranthus hybridus HOM05D008195 ORTHO05D000743 1.3e-15 88.2 211 32.2
Aqoxy3G03627 Aquilegia oxysepala HOM05D001093 ORTHO05D000743 1.7e-15 87.8 178 34.8
Actinidia27478 Actinidia chinensis HOM05D001093 ORTHO05D000743 3.7e-15 86.7 146 38.4
QL09p031893 Quercus lobata HOM05D007909 ORTHO05D000743 6.4e-15 85.9 161 36.6
ClCG04G011830 Citrullus lanatus HOM05D000020 ORTHO05D000743 2.4e-14 84.0 182 33.0
FvH4_5g13941 Fragaria vesca HOM05D001093 ORTHO05D000743 1.6e-13 81.3 144 35.4
Nitab4.5_0001485g0150 Nicotiana tabacum HOM05D008195 ORTHO05D000743 1.6e-13 81.3 184 33.2
Manes.14G085201 Manihot esculenta HOM05D001093 ORTHO05D000743 2.7e-13 80.5 215 30.2
Nitab4.5_0007689g0050 Nicotiana tabacum HOM05D008195 ORTHO05D000743 2.7e-13 80.5 184 32.1
EL10Ac5g11122 Beta vulgaris HOM05D001093 ORTHO05D000743 3.5e-13 80.1 216 29.6
AUR62008519 Chenopodium quinoa HOM05D001093 ORTHO05D000743 3.5e-13 80.1 160 30.6
SalBow5G5623 Salvia bowleyana HOM05D001093 ORTHO05D000743 1.0e-12 78.6 247 30.0
AUR62021572 Chenopodium quinoa HOM05D001093 ORTHO05D000743 1.7e-12 77.8 160 31.9
Dinv11327 Davidia involucrata HOM05D001093 ORTHO05D000743 1.7e-12 77.8 259 27.4
Migut.I00329 Erythranthe guttata HOM05D001093 ORTHO05D000743 1.7e-12 77.8 201 26.9
VMungo1309G2619 Vigna mungo HOM05D007909 ORTHO05D000743 1.7e-12 77.8 136 38.2
Solyc03g115160.3 Solanum lycopersicum HOM05D008195 ORTHO05D000743 2.3e-12 77.4 243 29.2
PGSC0003DMG400024640 Solanum tuberosum HOM05D008195 ORTHO05D000743 2.3e-12 77.4 243 29.2
QL03p072663 Quercus lobata HOM05D001093 ORTHO05D000743 3.0e-12 77.0 152 33.6
Sopen03g034220 Solanum pennellii HOM05D008195 ORTHO05D000743 3.0e-12 77.0 243 29.2
ECA247G2835 Erigeron canadensis HOM05D001093 ORTHO05D000743 5.1e-12 76.3 149 31.5
DCAR_011399 Daucus carota HOM05D001093 ORTHO05D000743 6.6e-12 75.9 153 34.0
QL03p072752 Quercus lobata HOM05D001093 ORTHO05D000743 6.6e-12 75.9 152 32.2
PGSC0003DMG400020472 Solanum tuberosum HOM05D008195 ORTHO05D000743 6.6e-12 75.9 202 30.7
PGSC0003DMG400026134 Solanum tuberosum HOM05D008195 ORTHO05D000743 6.6e-12 75.9 168 32.1
Sopen06g024610 Solanum pennellii HOM05D008195 ORTHO05D000743 8.6e-12 75.5 240 28.3
Peaxi162Scf00842g00328 Petunia axillaris HOM05D001093 ORTHO05D000743 1.1e-11 75.1 159 32.7
Solyc06g066360.3 Solanum lycopersicum HOM05D008195 ORTHO05D000743 1.5e-11 74.7 199 29.1
ATR0772G157 Amborella trichopoda HOM05D001093 ORTHO05D000743 3.3e-11 73.6 191 30.9
Sopen06g021660 Solanum pennellii HOM05D000006 ORTHO05D000001 3.3e-11 73.6 184 28.3
CSS0013878 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 4.3e-11 73.2 154 32.5
Carub.0008s2179 Capsella rubella HOM05D007909 ORTHO05D000743 4.3e-11 73.2 248 29.0
Solyc06g066140.3 Solanum lycopersicum HOM05D008195 ORTHO05D000743 4.3e-11 73.2 119 34.5
Peaxi162Scf00201g00235 Petunia axillaris HOM05D008195 ORTHO05D000743 5.6e-11 72.8 182 31.9
THA.LOC104801226 Tarenaya hassleriana HOM05D007909 ORTHO05D000743 5.6e-11 72.8 211 31.8
EL10Ac3g05045 Beta vulgaris HOM05D001093 ORTHO05D000743 9.6e-11 72.0 168 33.9
A03p46760 Brassica napus HOM05D007909 ORTHO05D000743 1.6e-10 71.2 178 33.1
BraA03t13798Z Brassica rapa HOM05D007909 ORTHO05D000743 3.6e-10 70.1 154 33.1
Thhalv10005634m.g Eutrema salsugineum HOM05D007909 ORTHO05D000743 4.7e-10 69.7 228 31.6
PGR083G1305 Punica granatum HOM05D007909 ORTHO05D000022 6.2e-10 69.3 132 39.4
AL8G37760 Arabidopsis lyrata HOM05D007909 ORTHO05D000743 1.1e-09 68.6 161 32.9
C07p44810 Brassica napus HOM05D007909 ORTHO05D010605 1.8e-09 67.8 160 34.4
CAN.G111.39 Capsicum annuum HOM05D008195 ORTHO05D000743 1.8e-09 67.8 141 29.1
Thhalv10004389m.g Eutrema salsugineum HOM05D007909 ORTHO05D000743 1.8e-09 67.8 211 27.0
Sp1g32760 Schrenkiella parvula HOM05D001093 ORTHO05D000743 1.8e-09 67.8 147 30.6
Actinidia16168 Actinidia chinensis HOM05D008195 ORTHO05D000743 3.1e-09 67.0 97 39.2
CSS0045835 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 3.1e-09 67.0 154 31.2
BolC7t45005H Brassica oleracea HOM05D007909 ORTHO05D000743 4.0e-09 66.6 160 33.8
Sp2g24370 Schrenkiella parvula HOM05D007909 ORTHO05D000743 6.8e-09 65.9 233 29.2
BcaC06g33179 Brassica carinata HOM05D007909 ORTHO05D000743 8.9e-09 65.5 152 31.6
C07p44800 Brassica napus HOM05D007909 ORTHO05D000743 1.5e-08 64.7 152 31.6
Hund11240 Selenicereus undatus HOM05D001093 ORTHO05D000743 1.5e-08 64.7 174 28.7
BolC7t45004H Brassica oleracea HOM05D007909 ORTHO05D000743 2.0e-08 64.3 189 28.6
A03p46770 Brassica napus HOM05D007909 ORTHO05D010605 2.6e-08 63.9 160 32.5
BraA03t13799Z Brassica rapa HOM05D007909 ORTHO05D010605 2.6e-08 63.9 160 32.5
Peaxi162Scf00071g00201 Petunia axillaris HOM05D001093 ORTHO05D000743 4.4e-08 63.2 147 30.6
PGSC0003DMG400037001 Solanum tuberosum HOM05D008195 ORTHO05D000743 5.8e-08 62.8 85 37.6
COL.COLO4_08293 Corchorus olitorius HOM05D001093 ORTHO05D000743 7.6e-08 62.4 204 25.5
Zm00001eb020140 Zea mays HOM05D001093 ORTHO05D000743 7.6e-08 62.4 174 27.6
Os03g0421000 Oryza sativa ssp. japonica HOM05D001093 ORTHO05D000743 1.3e-07 61.6 179 26.8
CiPaw.05G213100 Carya illinoinensis HOM05D001093 ORTHO05D000743 2.2e-07 60.8 155 29.7
Thhalv10011612m.g Eutrema salsugineum HOM05D001093 ORTHO05D000743 2.2e-07 60.8 142 28.9
PGSC0003DMG400041231 Solanum tuberosum HOM05D008195 ORTHO05D010950 2.2e-07 60.8 237 25.7
CAN.G675.32 Capsicum annuum HOM05D008195 ORTHO05D010950 2.9e-07 60.5 92 34.8
Nn5g28671 Nelumbo nucifera HOM05D001093 ORTHO05D000743 2.9e-07 60.5 198 26.8
A06p03830 Brassica napus HOM05D001093 ORTHO05D000743 3.8e-07 60.1 142 30.3
BcaB07g33670 Brassica carinata HOM05D001093 ORTHO05D000743 6.4e-07 59.3 146 30.1
BcaC06g33178 Brassica carinata HOM05D007909 ORTHO05D010605 6.4e-07 59.3 153 32.7
DCAR_030040 Daucus carota HOM05D001093 ORTHO05D000743 8.4e-07 58.9 126 32.5
FAN27G2937 Fragaria x ananassa HOM05D001093 ORTHO05D000743 1.1e-06 58.5 231 26.0
MBI19_g36253_MAGBIO Magnolia biondii HOM05D001093 ORTHO05D010605 1.1e-06 58.5 282 25.2
Dinv05707 Davidia involucrata HOM05D001093 ORTHO05D000743 1.4e-06 58.2 145 28.3
Medtr5g098320 Medicago truncatula HOM05D001093 ORTHO05D000743 1.4e-06 58.2 143 30.1
BcaC08g43143 Brassica carinata HOM05D001093 ORTHO05D000743 1.9e-06 57.8 142 30.3
C06p04250 Brassica napus HOM05D001093 ORTHO05D000743 1.9e-06 57.8 143 31.5
BolC6t35549H Brassica oleracea HOM05D001093 ORTHO05D000743 1.9e-06 57.8 143 31.5
BraA06t23590Z Brassica rapa HOM05D001093 ORTHO05D000743 1.9e-06 57.8 142 29.6
CAN.G1131.39 Capsicum annuum HOM05D001093 ORTHO05D000743 2.4e-06 57.4 170 27.6
CAN.G1228.30 Capsicum annuum HOM05D008195 ORTHO05D010950 2.4e-06 57.4 132 29.5
FAN13G2174 Fragaria x ananassa HOM05D007909 ORTHO05D000743 2.4e-06 57.4 49 59.2
HPP92_004390 Vanilla planifolia HOM05D001093 ORTHO05D000743 2.4e-06 57.4 143 29.4
HPP92_027188 Vanilla planifolia HOM05D001093 ORTHO05D000743 2.4e-06 57.4 143 29.4
AL1G51860 Arabidopsis lyrata HOM05D001093 ORTHO05D000743 3.2e-06 57.0 144 28.5
PGSC0003DMG400035870 Solanum tuberosum HOM05D008195 ORTHO05D010950 4.2e-06 56.6 83 33.7
RcHm_v2.0_Chr4g0414561 Rosa chinensis HOM05D008195 ORTHO05D010605 5.4e-06 56.2 89 40.4
Aa31LG6G9690 Aethionema arabicum HOM05D001093 ORTHO05D000743 7.1e-06 55.8 150 29.3
AT1G43770 Arabidopsis thaliana HOM05D001093 ORTHO05D000743 7.1e-06 55.8 144 28.5


User provided reference genes

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