Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G3767 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.6e-241 839.0 410 100.0
FvH4_5g08230 Fragaria vesca HOM05D005744 ORTHO05D007503 8.5e-235 816.6 410 97.6
FAN08G2910 Fragaria x ananassa HOM05D005744 ORTHO05D007503 8.8e-232 806.6 412 97.1
FAN13G0489 Fragaria x ananassa HOM05D005744 ORTHO05D007503 2.7e-228 795.0 450 88.4
RcHm_v2.0_Chr7g0190291 Rosa chinensis HOM05D005744 ORTHO05D007503 6.8e-224 780.4 410 92.2
Prupe.5G151700 Prunus persica HOM05D005744 ORTHO05D007503 8.1e-185 650.6 419 78.5
MD14G1157700 Malus domestica HOM05D005744 ORTHO05D007503 7.6e-183 644.0 413 78.5
CANSAT80G0573 Cannabis sativa HOM05D005744 ORTHO05D007503 1.5e-167 593.2 424 72.2
Manes.14G051500 Manihot esculenta HOM05D005744 ORTHO05D007503 7.4e-162 574.3 425 69.2
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 1.1e-160 570.5 419 70.2
Potri.015G095400 Populus trichocarpa HOM05D005744 ORTHO05D007503 2.4e-160 569.3 416 69.5
Gorai.008G206000 Gossypium raimondii HOM05D005744 ORTHO05D007503 6.9e-160 567.8 420 68.8
GSVIVG01008538001 Vitis vinifera HOM05D005744 ORTHO05D007503 5.8e-159 564.7 418 69.1
Ciclev10020324m.g Citrus clementina HOM05D005744 ORTHO05D007503 7.6e-159 564.3 417 68.1
Gohir.A12G189400 Gossypium hirsutum HOM05D005744 ORTHO05D007503 7.6e-159 564.3 420 67.6
Gohir.D12G191700 Gossypium hirsutum HOM05D005744 ORTHO05D007503 1.0e-158 563.9 420 67.4
CARHR232280 Cardamine hirsuta HOM05D005744 ORTHO05D007503 2.9e-158 562.4 417 64.7
COL.COLO4_28103 Corchorus olitorius HOM05D005744 ORTHO05D007503 3.8e-158 562.0 427 67.7
Sed0005313 Sechium edule HOM05D005744 ORTHO05D007503 4.9e-158 561.6 428 66.6
CiPaw.11G008100 Carya illinoinensis HOM05D005744 ORTHO05D007503 1.9e-157 559.7 421 68.4
Carub.0007s1619 Capsella rubella HOM05D005744 ORTHO05D007503 1.6e-156 556.6 417 64.0
Sabra15G0116400 Salix brachista HOM05D005744 ORTHO05D007503 1.6e-156 556.6 424 67.2
BraA03t14628Z Brassica rapa HOM05D005744 ORTHO05D007503 2.1e-156 556.2 419 65.2
ClCG06G017860 Citrullus lanatus HOM05D005744 ORTHO05D007503 2.1e-156 556.2 431 65.9
arahy.Tifrunner.gnm1.ann1.SJIN4P Arachis hypogaea HOM05D005744 ORTHO05D007503 2.7e-156 555.8 421 65.8
MELO3C026209.2 Cucumis melo HOM05D005744 ORTHO05D007503 2.7e-156 555.8 431 65.4
arahy.Tifrunner.gnm1.ann1.DQ5P63 Arachis hypogaea HOM05D005744 ORTHO05D007503 7.9e-156 554.3 417 66.2
AL7G28320 Arabidopsis lyrata HOM05D005744 ORTHO05D007503 3.9e-155 552.0 415 63.9
A03p55610 Brassica napus HOM05D005744 ORTHO05D007503 3.9e-155 552.0 419 64.9
Nn3g16475 Nelumbo nucifera HOM05D005744 ORTHO05D007503 3.9e-155 552.0 418 66.0
Thecc.03G128600 Theobroma cacao HOM05D005744 ORTHO05D007503 3.9e-155 552.0 420 66.0
BcaC06g32852 Brassica carinata HOM05D005744 ORTHO05D007503 5.1e-155 551.6 419 64.4
BolC7t45875H Brassica oleracea HOM05D005744 ORTHO05D007503 5.1e-155 551.6 419 64.4
CSS0041302 Camellia sinensis var. sinensis HOM05D005744 ORTHO05D007503 5.1e-155 551.6 422 66.8
C07p53850 Brassica napus HOM05D005744 ORTHO05D007503 6.7e-155 551.2 419 64.4
Cfa018827 Carpinus fangiana HOM05D005744 ORTHO05D007503 6.7e-155 551.2 416 68.3
Lsat_1_v5_gn_4_80081 Lactuca sativa HOM05D005744 ORTHO05D007503 6.7e-155 551.2 415 65.1
CsaV3_1G000590 Cucumis sativus L. HOM05D005744 ORTHO05D007503 1.5e-154 550.1 422 65.4
Lalb_Chr08g0237111 Lupinus albus HOM05D005744 ORTHO05D007503 1.5e-154 550.1 416 66.6
DCAR_021616 Daucus carota HOM05D005744 ORTHO05D007503 1.9e-154 549.7 434 64.5
Peaxi162Scf00074g00136 Petunia axillaris HOM05D005744 ORTHO05D007503 2.5e-154 549.3 410 67.1
QL10p003203 Quercus lobata HOM05D005744 ORTHO05D007503 2.5e-154 549.3 413 69.7
Sp7g22860 Schrenkiella parvula HOM05D005744 ORTHO05D007503 2.8e-153 545.8 419 63.2
Atru.chr9.1122 Acer truncatum HOM05D005744 ORTHO05D007503 4.8e-153 545.0 423 66.4
Psat5g140680 Pisum sativum HOM05D005744 ORTHO05D007503 4.8e-153 545.0 412 66.5
Thhalv10025348m.g Eutrema salsugineum HOM05D005744 ORTHO05D007503 1.1e-152 543.9 403 64.3
HanXRQChr16g0498211 Helianthus annuus HOM05D005744 ORTHO05D007503 1.4e-152 543.5 417 64.7
Glyma.06G170500 Glycine max HOM05D005744 ORTHO05D007503 3.1e-152 542.3 415 65.8
Aqoxy3G01542 Aquilegia oxysepala HOM05D005744 ORTHO05D007503 5.3e-152 541.6 411 64.5
THA.LOC104825016 Tarenaya hassleriana HOM05D005744 ORTHO05D007503 5.3e-152 541.6 416 64.7
Lj1g0015277 Lotus japonicus HOM05D005744 ORTHO05D007503 1.5e-151 540.0 416 64.9
Medtr3g074980 Medicago truncatula HOM05D005744 ORTHO05D007503 1.7e-150 536.6 413 65.4
PGSC0003DMG400012114 Solanum tuberosum HOM05D005744 ORTHO05D007503 1.7e-150 536.6 422 64.9
Oeu010732.1 Olea europaea HOM05D005744 ORTHO05D007503 3.8e-150 535.4 431 64.7
ECA232G3603 Erigeron canadensis HOM05D005744 ORTHO05D007503 6.5e-150 534.6 419 64.7
Solyc08g083260.3 Solanum lycopersicum HOM05D005744 ORTHO05D007503 8.4e-150 534.3 426 64.3
Sopen08g031450 Solanum pennellii HOM05D005744 ORTHO05D007503 1.4e-149 533.5 426 64.1
Ca_24503_v3 Cicer arietinum L. HOM05D005744 ORTHO05D007503 1.9e-149 533.1 414 65.2
Rhsim08G0189700 Rhododendron simsii HOM05D005744 ORTHO05D007503 4.2e-149 531.9 413 65.9
RhsimUnG0231400 Rhododendron simsii HOM05D005744 ORTHO05D007503 7.1e-149 531.2 415 65.5
Cc08_g16880 Coffea canephora HOM05D005744 ORTHO05D007503 1.2e-148 530.4 426 64.1
EL10As4g23384 Beta vulgaris HOM05D005744 ORTHO05D007503 1.6e-148 530.0 427 64.2
VMungo1309G1043 Vigna mungo HOM05D005744 ORTHO05D007503 1.6e-148 530.0 426 63.8
PGR044G2189 Punica granatum HOM05D005744 ORTHO05D007503 4.6e-148 528.5 382 69.1
Phvul.009G166600 Phaseolus vulgaris HOM05D005744 ORTHO05D007503 6.1e-148 528.1 430 63.3
Migut.E00304 Erythranthe guttata HOM05D005744 ORTHO05D007503 3.0e-147 525.8 413 65.1
MSTRG.13706 Avicennia marina HOM05D005744 ORTHO05D007503 8.7e-147 524.2 411 63.7
MBI07_g31012_MAGBIO Magnolia biondii HOM05D005744 ORTHO05D007503 1.9e-146 523.1 427 64.6
Nitab4.5_0002720g0090 Nicotiana tabacum HOM05D005744 ORTHO05D007503 5.7e-146 521.5 454 61.2
TPR.G12158 Trifolium pratense HOM05D005744 ORTHO05D007503 1.3e-145 520.4 413 64.9
PSO801G0019 Papaver somniferum HOM05D005744 ORTHO05D007503 1.6e-145 520.0 411 65.9
TPR.G26152 Trifolium pratense HOM05D005744 ORTHO05D007503 1.6e-145 520.0 411 64.0
ATR0561G060 Amborella trichopoda HOM05D005744 ORTHO05D007503 2.8e-145 519.2 424 62.5
PSO782G2798 Papaver somniferum HOM05D005744 ORTHO05D007503 8.2e-145 517.7 415 62.7
Ah.02g114920 Amaranthus hybridus HOM05D005744 ORTHO05D007503 1.8e-144 516.5 451 62.1
Actinidia25578 Actinidia chinensis HOM05D005744 ORTHO05D007503 5.3e-144 515.0 401 66.3
Duzib205G1133 Durio zibethinus HOM05D005744 ORTHO05D007503 9.0e-144 514.2 420 63.6
Eucgr.K02730 Eucalyptus grandis HOM05D005744 ORTHO05D007503 3.4e-143 512.3 441 62.1
PSO339G3552 Papaver somniferum HOM05D005744 ORTHO05D007503 7.7e-143 511.1 415 63.4
Haze_07221 Corylus avellana HOM05D005744 ORTHO05D007503 1.7e-142 510.0 484 58.5
FvH4_4g11820 Fragaria vesca HOM05D005744 ORTHO05D007503 3.8e-142 508.8 410 64.6
Actinidia33099 Actinidia chinensis HOM05D005744 ORTHO05D007503 1.4e-141 506.9 399 64.7
CDE05G2332 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 3.2e-141 505.8 417 61.2
AUR62029618 Chenopodium quinoa HOM05D005744 ORTHO05D007503 2.7e-140 502.7 391 65.7
FAN07G2643 Fragaria x ananassa HOM05D005744 ORTHO05D007503 4.6e-140 501.9 325 74.2
HPP92_020223 Vanilla planifolia HOM05D005744 ORTHO05D007503 5.1e-139 498.4 438 58.0
AUR62025939 Chenopodium quinoa HOM05D005744 ORTHO05D007503 8.8e-139 497.7 396 63.9
SalBow5G0293 Salvia bowleyana HOM05D005744 ORTHO05D007503 1.1e-138 497.3 430 61.4
Dinv11169 Davidia involucrata HOM05D005744 ORTHO05D007503 5.7e-138 495.0 420 62.6
Os01g0101300 Oryza sativa ssp. japonica HOM05D005744 ORTHO05D007503 2.2e-137 493.0 412 61.2
CAN.G567.98 Capsicum annuum HOM05D005744 ORTHO05D007503 7.2e-133 478.0 445 58.9
vmacro19203 Vaccinium macrocarpon HOM05D005744 ORTHO05D007503 3.6e-132 475.7 473 56.0
Lj9A478G92 Lonicera japonica HOM05D005744 ORTHO05D007503 2.8e-129 466.1 390 62.8
Glyma.04G195500 Glycine max HOM05D005744 ORTHO05D007503 6.3e-129 464.9 315 68.9
TAR629G2476 Trochodendron aralioides HOM05D005744 ORTHO05D007503 9.1e-128 461.1 329 70.8
AT4G24880 Arabidopsis thaliana HOM05D005744 ORTHO05D007503 1.1e-125 454.1 332 65.7
TAR633G0019 Trochodendron aralioides HOM05D005744 ORTHO05D007503 1.4e-123 447.2 303 70.0
Zm00001eb354570 Zea mays HOM05D005744 ORTHO05D007503 1.1e-120 437.6 420 55.7
Aa31LG7G10960 Aethionema arabicum HOM05D005744 ORTHO05D007503 1.4e-120 437.2 298 68.5
SGA_v2.0_scaffold22G09828 Striga asiatica HOM05D005744 ORTHO05D007503 5.3e-120 435.3 411 58.2
Sc04g0000680 Simmondsia chinensis HOM05D005744 ORTHO05D007503 5.0e-118 428.7 302 68.2
Mapoly0024s0037 Marchantia polymorpha HOM05D005744 ORTHO05D007503 1.9e-117 426.8 424 52.6
FAN12G3536 Fragaria x ananassa HOM05D005744 ORTHO05D007503 3.6e-116 422.5 309 68.3
SMO364G0648 Selaginella moellendorffii HOM05D005744 ORTHO05D007503 2.4e-112 409.8 399 52.6
PSO478G2520 Papaver somniferum HOM05D005744 ORTHO05D007503 7.0e-112 408.3 335 60.6
Pp3c8_11540 Physcomitrium patens HOM05D005744 ORTHO05D007503 5.9e-111 405.2 430 49.3
Cpa.g.sc2981.2 Carica papaya HOM05D005744 ORTHO05D007503 2.2e-110 403.3 310 65.8
FAN12G3591 Fragaria x ananassa HOM05D005744 ORTHO05D007503 2.1e-108 396.7 287 67.9
unitig_27.g25288 Utricularia gibba HOM05D005744 ORTHO05D007503 1.4e-107 394.0 412 52.2
SalBow5G5674 Salvia bowleyana HOM05D005744 ORTHO05D007503 1.5e-106 390.6 429 52.4
SEGI_05259 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 5.0e-86 322.4 316 53.5
Nitab4.5_0000479g0030 Nicotiana tabacum HOM05D005744 ORTHO05D007503 3.3e-85 319.7 277 61.0
MCO07G390 Micromonas commoda HOM05D005744 ORTHO05D007503 7.6e-66 255.4 463 36.1
SEGI_21905 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 9.9e-66 255.0 183 62.8
Eucgr.L02977 Eucalyptus grandis HOM05D005744 ORTHO05D007503 4.9e-65 252.7 281 54.8
AagrBONN_evm.TU.Sc2ySwM_344.2997 Anthoceros agrestis HOM05D005744 ORTHO05D007503 3.6e-60 236.5 228 50.0
RcHm_v2.0_Chr4g0407951 Rosa chinensis HOM05D005744 ORTHO05D007503 9.0e-59 231.9 244 53.7
PRCOL_00001155 Prasinoderma coloniale HOM05D005744 ORTHO05D007503 1.3e-54 218.0 431 35.7
Cre16.g666000 Chlamydomonas reinhardtii HOM05D005744 ORTHO05D007503 2.5e-53 213.8 575 30.1
SHI06365 Sapria himalayana HOM05D005744 ORTHO05D007503 1.1e-48 198.4 370 36.8
COL.COLO4_31215 Corchorus olitorius HOM05D005744 ORTHO05D007503 1.3e-41 174.9 127 68.5
Lsat_1_v5_gn_8_77640 Lactuca sativa HOM05D005744 ORTHO05D007503 3.8e-41 173.3 139 62.6
GSVIVG01008540001 Vitis vinifera HOM05D005744 ORTHO05D007503 1.8e-38 164.5 119 70.6
HanXRQChr10g0289761 Helianthus annuus HOM05D005744 ORTHO05D007503 1.5e-37 161.4 195 46.7
QL10p003231 Quercus lobata HOM05D005744 ORTHO05D007503 1.4e-35 154.8 115 68.7
RcHm_v2.0_Chr4g0407901 Rosa chinensis HOM05D005744 ORTHO05D007503 1.8e-27 127.9 261 36.4
Aa31LG7G10970 Aethionema arabicum HOM05D005744 ORTHO05D007503 3.8e-25 120.2 121 57.0
CDE12G0192 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 2.0e-21 107.8 139 50.4
Lsat_1_v5_gn_8_150141 Lactuca sativa HOM05D005744 ORTHO05D048266 8.2e-20 102.4 122 44.3
TAR629G1577 Trochodendron aralioides HOM05D005744 ORTHO05D007503 2.4e-11 74.3 57 63.2
SEGI_17145 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 2.2e-09 67.8 62 59.7
HanXRQChr10g0289791 Helianthus annuus HOM05D005744 ORTHO05D048266 1.2e-07 62.0 39 69.2
CDE05G3540 Ceratophyllum demersum HOM05D005744 ORTHO05D130478 8.0e-07 59.3 103 42.7


User provided reference genes

Program Settings