Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN18G3734 Fragaria x ananassa HOM05D000003 ORTHO05D025552 2.1e-75 285.4 128 100.0
FAN08G3519 Fragaria x ananassa HOM05D000098 ORTHO05D025552 9.3e-71 270.0 132 92.4
FAN04G2401 Fragaria x ananassa HOM05D000003 ORTHO05D025552 2.5e-68 261.9 132 92.4
FvH4_5g19160 Fragaria vesca HOM05D000003 ORTHO05D025552 5.1e-61 237.7 126 86.5
Prupe.6G290200 Prunus persica HOM05D000098 ORTHO05D025552 2.2e-16 89.4 127 40.2
Prupe.6G290300 Prunus persica HOM05D000098 ORTHO05D001079 7.2e-15 84.3 126 39.7
Prupe.5G066600 Prunus persica HOM05D000098 ORTHO05D001079 2.7e-14 82.4 126 42.9
TAR633G2548 Trochodendron aralioides HOM05D001318 ORTHO05D001152 6.1e-14 81.3 125 36.8
Thecc.02G040200 Theobroma cacao HOM05D000098 ORTHO05D001079 3.4e-12 75.5 132 32.6
PSO063G2285 Papaver somniferum HOM05D000098 ORTHO05D001079 9.8e-12 73.9 131 34.4
PSO782G0176 Papaver somniferum HOM05D000098 ORTHO05D001079 8.3e-11 70.9 131 33.6
QL12p011649 Quercus lobata HOM05D000098 ORTHO05D001079 1.2e-09 67.0 117 29.9
SGA_v2.0_scaffold110G31295 Striga asiatica HOM05D000098 ORTHO05D001079 1.6e-09 66.6 131 35.1
Gohir.D09G085800 Gossypium hirsutum HOM05D000098 ORTHO05D001079 2.7e-09 65.9 122 36.9
Manes.10G130900 Manihot esculenta HOM05D000098 ORTHO05D001079 2.7e-09 65.9 122 33.6
Lalb_Chr16g0379411 Lupinus albus HOM05D000098 ORTHO05D001079 5.9e-09 64.7 127 32.3
SGA_v2.0_scaffold1318G53911 Striga asiatica HOM05D000098 ORTHO05D001079 5.9e-09 64.7 127 37.0
Eucgr.C00070 Eucalyptus grandis HOM05D000098 ORTHO05D001079 1.0e-08 63.9 118 34.7
SGA_v2.0_scaffold9G04965 Striga asiatica HOM05D000098 ORTHO05D001079 1.3e-08 63.5 119 36.1
TPR.G15152 Trifolium pratense HOM05D000098 ORTHO05D001079 1.7e-08 63.2 119 36.1
Gorai.006G102000 Gossypium raimondii HOM05D000098 ORTHO05D001079 2.2e-08 62.8 122 35.2
VMungo0464G1604 Vigna mungo HOM05D000098 ORTHO05D001079 2.2e-08 62.8 129 27.1
CiPaw.05G014500 Carya illinoinensis HOM05D000098 ORTHO05D001079 2.9e-08 62.4 128 32.0
HPP92_009438 Vanilla planifolia HOM05D000098 ORTHO05D001079 2.9e-08 62.4 118 35.6
Glyma.09G166200 Glycine max HOM05D000098 ORTHO05D001079 3.8e-08 62.0 108 33.3
Lalb_Chr20g0116871 Lupinus albus HOM05D000098 ORTHO05D001079 3.8e-08 62.0 127 29.9
Lalb_Chr20g0116881 Lupinus albus HOM05D000098 ORTHO05D001079 3.8e-08 62.0 127 29.9
Thecc.06G031700 Theobroma cacao HOM05D000098 ORTHO05D001079 3.8e-08 62.0 128 33.6
Gohir.D09G085900 Gossypium hirsutum HOM05D000098 ORTHO05D001079 5.0e-08 61.6 122 35.2
Actinidia09049 Actinidia chinensis HOM05D000098 ORTHO05D001228 6.5e-08 61.2 130 29.2
CANSAT78G0441 Cannabis sativa HOM05D000098 ORTHO05D001228 6.5e-08 61.2 121 30.6
HanXRQChr00c0095g0571661 Helianthus annuus HOM05D000098 ORTHO05D001079 6.5e-08 61.2 120 34.2
HanXRQChr11g0340371 Helianthus annuus HOM05D000098 ORTHO05D001079 6.5e-08 61.2 120 34.2
Prupe.6G288900 Prunus persica HOM05D000098 ORTHO05D001079 6.5e-08 61.2 132 33.3
HanXRQChr13g0390011 Helianthus annuus HOM05D000098 ORTHO05D019251 8.5e-08 60.8 131 31.3
Phvul.004G141800 Phaseolus vulgaris HOM05D000098 ORTHO05D001079 8.5e-08 60.8 108 32.4
Potri.002G241500 Populus trichocarpa HOM05D000098 ORTHO05D001079 8.5e-08 60.8 127 34.6
SEGI_29153 Sequoiadendron giganteum HOM05D000098 ORTHO05D001079 8.5e-08 60.8 121 31.4
COL.COLO4_11876 Corchorus olitorius HOM05D000098 ORTHO05D001079 1.1e-07 60.5 129 32.6
Gohir.A09G085800 Gossypium hirsutum HOM05D000098 ORTHO05D001079 1.1e-07 60.5 122 34.4
HanXRQChr11g0340401 Helianthus annuus HOM05D000098 ORTHO05D001079 1.1e-07 60.5 120 33.3
HanXRQChr11g0340441 Helianthus annuus HOM05D000098 ORTHO05D001079 1.1e-07 60.5 120 33.3
HanXRQChr11g0340461 Helianthus annuus HOM05D000098 ORTHO05D001079 1.1e-07 60.5 120 33.3
HanXRQChr17g0535601 Helianthus annuus HOM05D000098 ORTHO05D001079 1.1e-07 60.5 120 33.3
HanXRQChr17g0535621 Helianthus annuus HOM05D000098 ORTHO05D001079 1.1e-07 60.5 120 33.3
Duzib052G0550 Durio zibethinus HOM05D000098 ORTHO05D001079 1.5e-07 60.1 139 32.4
HanXRQChr07g0202761 Helianthus annuus HOM05D000098 ORTHO05D001079 1.5e-07 60.1 120 30.8
Actinidia30085 Actinidia chinensis HOM05D000098 ORTHO05D001079 2.5e-07 59.3 119 30.3
Cc01_g17140 Coffea canephora HOM05D000098 ORTHO05D001079 2.5e-07 59.3 120 32.5
FAN14G4530 Fragaria x ananassa HOM05D000003 ORTHO05D200905 2.5e-07 59.3 127 33.9
MELO3C019486.2 Cucumis melo HOM05D000098 ORTHO05D001079 4.2e-07 58.5 119 32.8
Duzib132G0243 Durio zibethinus HOM05D000098 ORTHO05D001079 4.2e-07 58.5 135 28.9
Prupe.2G149200 Prunus persica HOM05D000098 ORTHO05D001228 4.2e-07 58.5 121 33.1
ClCG05G009770 Citrullus lanatus HOM05D000098 ORTHO05D001079 5.5e-07 58.2 119 31.1
SGA_v2.0_scaffold342G49395 Striga asiatica HOM05D000098 ORTHO05D001079 5.5e-07 58.2 119 35.3
CAN.G473.90 Capsicum annuum HOM05D000098 ORTHO05D000523 7.2e-07 57.8 123 30.9
CiPaw.09G101900 Carya illinoinensis HOM05D000098 ORTHO05D008846 9.4e-07 57.4 121 32.2
Sed0007016 Sechium edule HOM05D000098 ORTHO05D001079 9.4e-07 57.4 134 30.6
Lalb_Chr07g0195361 Lupinus albus HOM05D000098 ORTHO05D000523 1.2e-06 57.0 121 29.8
Manes.10G131100 Manihot esculenta HOM05D000098 ORTHO05D001079 1.2e-06 57.0 114 32.5
Nn1g06269 Nelumbo nucifera HOM05D000098 ORTHO05D001079 1.2e-06 57.0 120 34.2
PGR044G1194 Punica granatum HOM05D000098 ORTHO05D001079 1.2e-06 57.0 120 31.7
SEGI_08219 Sequoiadendron giganteum HOM05D000098 ORTHO05D001228 1.2e-06 57.0 119 32.8
CSS0004169 Camellia sinensis var. sinensis HOM05D000098 ORTHO05D001079 1.6e-06 56.6 118 33.1
CsaV3_2G034170 Cucumis sativus L. HOM05D000098 ORTHO05D000523 1.6e-06 56.6 120 31.7
CiPaw.10G077500 Carya illinoinensis HOM05D000098 ORTHO05D008846 2.1e-06 56.2 102 36.3
Phvul.006G212825 Phaseolus vulgaris HOM05D000098 ORTHO05D001079 2.1e-06 56.2 119 31.1
Phvul.006G212900 Phaseolus vulgaris HOM05D000098 ORTHO05D001079 2.1e-06 56.2 119 31.1
SEGI_12941 Sequoiadendron giganteum HOM05D000098 ORTHO05D008846 2.1e-06 56.2 120 31.7
THA.LOC104820480 Tarenaya hassleriana HOM05D000098 ORTHO05D001079 2.1e-06 56.2 119 31.1
CiPaw.05G043300 Carya illinoinensis HOM05D000098 ORTHO05D001079 2.7e-06 55.8 128 32.0
Migut.B00672 Erythranthe guttata HOM05D000098 ORTHO05D001079 2.7e-06 55.8 114 33.3
Duzib052G1038 Durio zibethinus HOM05D000098 ORTHO05D001079 3.6e-06 55.5 130 32.3
Duzib133G1052 Durio zibethinus HOM05D000098 ORTHO05D001079 3.6e-06 55.5 127 34.6
Migut.B00674 Erythranthe guttata HOM05D000098 ORTHO05D001079 3.6e-06 55.5 131 31.3
Os02g0256800 Oryza sativa ssp. japonica HOM05D000098 ORTHO05D001079 3.6e-06 55.5 108 33.3
Nn5g28541 Nelumbo nucifera HOM05D000098 ORTHO05D001079 4.7e-06 55.1 120 31.7
Solyc07g008420.3 Solanum lycopersicum HOM05D000098 ORTHO05D000523 4.7e-06 55.1 125 32.8
Gohir.A11G232400 Gossypium hirsutum HOM05D000098 ORTHO05D001228 6.1e-06 54.7 105 35.2
Gorai.007G258800 Gossypium raimondii HOM05D000098 ORTHO05D001228 6.1e-06 54.7 105 35.2
Nn1g07818 Nelumbo nucifera HOM05D000098 ORTHO05D001079 6.1e-06 54.7 119 30.3
Nitab4.5_0000028g0460 Nicotiana tabacum HOM05D000098 ORTHO05D000523 6.1e-06 54.7 106 34.9
SEGI_30622 Sequoiadendron giganteum HOM05D000098 ORTHO05D001228 6.1e-06 54.7 119 31.9
Solyc02g094050.4 Solanum lycopersicum HOM05D000098 ORTHO05D000523 6.1e-06 54.7 130 29.2
Sopen02g038690 Solanum pennellii HOM05D000098 ORTHO05D000523 6.1e-06 54.7 130 29.2
PGSC0003DMG400021024 Solanum tuberosum HOM05D000098 ORTHO05D000523 6.1e-06 54.7 105 35.2
Ciclev10003124m.g Citrus clementina HOM05D000098 ORTHO05D001079 8.0e-06 54.3 130 32.3
MD15G1418000 Malus domestica HOM05D000098 ORTHO05D001079 8.0e-06 54.3 119 32.8
PGR042G2105 Punica granatum HOM05D000098 ORTHO05D001079 8.0e-06 54.3 131 30.5


User provided reference genes

Program Settings